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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028850 ID=TCONS_00028850|Name=TCONS_00028850|organism=Clytia hemisphaerica|type=transcript|length=692bp
tgtagATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTT
GTATCAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATT
CTGAAAGATGATAAAAAGACTTGCGAAGATCATGATGAATGTCTTGTCTT
GAATGGAGGTTGTTCACATGCTTGTATCAATACGAAAGGGAGTTTCCTTT
GCTCGTGCCCGATTGGTTGGATTCTAAAGGATGACAAAAAGACTTGCGAA
GTATGAAGTCTACAACAGTTATCATTTTCGCCGTCTTGGCTTTATCTTTG
GTGGTCGATGGTTACCCAATGGAAAATGAAAGTCAGCCCAAAATGGAGCT
TCCTAACGTTTTCGTTTTGGATGATAATGTGGAAAGCAAAGATCAAGATG
TTTTTAGACATAGATGCACCAGTCTATATTGCATTTGGGATTCGGAACTT
TGCGAACATTGCCCACAACACATACCATAAATTGTAAATCAGCCTTCAAA
AAAACCCGAATCGACAACGAAACaacaacagaaaaaatattttttttatg
aattatttATGTTGTATTTATCGTATAATGTATCAAtttatatcgttgga
aagataattcagCCCTTTAAGTTTCCACGGCTTTAaaatttgacaacctt
cttaacctaaggttgaactaccactggtgtaaaaatgaacgt Run BLAST on NCBI transcript from alignment at sc0000708:108555..118153+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028850 ID=TCONS_00028850|Name=TCONS_00028850|organism=Clytia hemisphaerica|type=transcript|length=9599bp|location=Sequence derived from alignment at sc0000708:108555..118153+ (Clytia hemisphaerica)
tgtagATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTT
GTATCAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATT
CTGAAAGATGATAAAAAGACTTGCGAAGGTAAATCCGACTAATTGTCGAC
CAAACTTATTTcctttggaaatattttgatattacattttcataacttaa
atAGCTTTGCCATGAAATAAGAGGTTTCATTTATGACTATAAAAGGCTTT
TGCAGGCTAAAAATCTTCAAAGCATTTGGATATCATTTCAAATAAAGTGg
atgaagatttaaaaattggAGGAGCGGGGGTGTATAGAGAAGTGTCTCat
ccagtagcgtggtgggtcgactaaaattcggGCAAACTGGGGATGCAATT
tcagaagattttgattttggcgccccctatgaaaagtaaatattttttaa
aaaataactcGAGTGAAGCGAGCACgaaattttctctctttttggccgaA
CACTCTCACatctaaggtgtaaaagagcaaaggAGCGCCGAAATTAGTAA
TTAAAGGCGTCTTTTTGCACCCACGGTGCCCCTTTGAAAAAAATCCGCTG
GGGTCATCCAAATAAAGTGGATGAAGATttaaaaatggggggggggtata
TAGAGGAGTGTCTCATCGCCCTGCAAGATTTCtattattcaaagaaaatt
ctgtCGCGCTGATTAGTCAAACAGGTCAAAAAAAAGACCAAATATTTCGA
GAGCTCATTTGATTAAACCACAAACaacatctttttttttaaatctgtag
ATCATGATGAATGTCTTGTCTTGAATGGAGGTTGTTCACATGCTTGTATC
AATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATTCTAAA
GGATGACAAAAAGACTTGCGAAGGTACGACTCAAAAACTGAAttaatttt
aaaggttttgtttttaaataagagtgatatcgctTGCTTATTTGTCAATT
TTAAcccacaagctttttcacattggattgacacatatgtggagcaagat
tggtcagaaagaggaaaagaacaaCAACTTTTTGCTTACTTTTTgaaaga
cactgtcctgatatgaaacatgtgtctgatatgaaacgggaacacttatg
taaaaataaaacctttaaatttggAATCGACAGTGAATATTATGAAGTCT
TTTTCACTGTTCTAGTATAAGCCTTATTTTATTAAAGAGTGAACAGATAT
CAGAAGGGCCAATGTGTCTTGATGCATTCTACTATAACAAGTTTTATGAG
AACGAGAGAATTTCTTTACAACCTAAAGAGGCTGTTTTGGTTTCTATGAA
CTCCCAAGCTCTTCcccaggcagggtgttagggaaatatggtgatagact
ctctaccttcactcacaTGTCGCTATGAACTCTAGTTTGAAAAATACCAA
ATCTAAACTTACATACGAGATCAGCCTTTAAAGTATATATCGAAAAACTA
TTCCTTAACAGATACTCGTTCACCAATAACCACGACATCTCTTACCACGA
CTACTATTAAATTAACACCAACATCTCTCTCAGTCACCACTAAAATTGTC
ACTAACGATAATCGAATACACCATCAACCATCAGTTAAACCATCACCAGG
ACCTCATCATCATCGATTGNactctctaccttcactcacaTGTCGCTATG
AACTCTAGTTAAAAAAAAGACCAATTCTAAACTTACATACGAGATCAGCC
TTTAAAGTATATATCGAAAAACCATTCCTTAACAGATACTCGTTCACCAA
TAACCACGACATCTCTTACCACAACTACTATTAAATCAACACCAATATCT
CCCTCAATCACCACTAAAATTGTCATTAACGATAATCGAATACACCATCA
ACCATCAGTTAAACCATCACCAGCACCTCATCATcatcgattaaaaacat
cacGAAGTATCTCAAATCAGACTAATCTGAAATCTTCATCACCTAATAAC
ACTAATACTAACTTAACCAGTAATTCATTAAACATTACAACGTTAAACTC
CGCTAACCATGACATTGATAAACTGGTTAAATCCAGTGATGGCAAATTAC
ATTTACATTCACCTTTGATAGTCGGTTGTATTGTAGCTGTGGTATTAATA
GCTGCTTGTATTGTGGTCAAAGTATGGCTAAAAAAGAATTCTTAACATAT
TATTGTGATAGACCATGGTGTTCTAAAGTAACTTTAGTACGCCATGTGAT
AGACTTAACAGACTCGATCTTGATTAATTTTCAAGCAGAGGTACTAAacg
ttatttttataagaacaaactatatatgaacataaggcttcgatggccga
aatgttgagaacaagttaagaacattttaaggctttgccgaTCCTAAAAC
AGCCGGTTTCTTGCATTGGGCAAAAGTGctaaaaaaatggtgaaaataag
aaaatgttaagaacatttttaggcttgagactcaaaaagttttaagaaca
tccggaggcttcaaaaagtttggatgttcttataaaaaaaacgtgtctAT
TAACAATTATCATTGCACTCTGCAAGATAGTTTGACAAAAAATTGGTGAG
CTCTTCGATTCTGGAATTTCTTATGGCATCAACACCCAATTTTTACAGTA
ATGTTGATTCGTTCTTTTTGCATAGTGGCtttggttttgattttaataGC
CTGAACATTGGATAAATTATGACTTTAGCCACACTCACTGGTAtgatagc
gagtttatgtatcgaaCGATATCGAGGGCAACGGTAAATGAAGTCAACGC
AAAAAAAACTCGCTATTGTGTTTTACGGTGAATCCGAAAGACTTACTTTA
GCTTCGTTCTATAGTTGTCCATTTCTATTTTTCGACAAGAGTGTTATATT
TTGGCATTTGAGCTCGCTCTGTGACATAAAGATATTTGATGTGATTCTAC
TGTCAAAAGTGAAGGggtatttttagtttttgcttgcataaataaaataa
aattatatacAGTTGACcgacagttgacgctctctgatTTGATTTAAGAT
CCATTGGATTTCCATCGAATAGTAgattttcgaattacagagcaTCAACT
ATACCTCGAAATTTAATGGGAATATGAATGAAGCAATCATCTTTGTGGAA
TTCAAGAAGTaaatgaatttcattttttggacctaggggccatccatata
gtacgtacgcagtgaaggggggagaggggggtttagcaaaagcgtatgtc
tattgtttgaatgacgtcatttatatttttctcgtaCAAGGGGGGATggg
gtgtcaaatatttggaaaattcttGCGTACGTACATGACCCCCTACCTCT
GAGGTCCTTtagtccgtctgttaccagcttttctcgagattggctcatta
gttttttctgatttttggcacaaaggtgcaaaattATGATGCCCGAAATG
TAACccgagcccgattttcgaaaaaaccgGCTGAAATTCCCGGAAATATG
CCTGAAAAACCggcatttttggcatttttctcGAGAtatcatcattagtt
ttttcctgatttttagcacaaagatgcgtattagcaatgctcaaaacatg
gctgagtcctatttttataagaaaaattcttttctggccgaaaatgccgg
aaatatgccgaaaatcgccgtttttgcagattttcattggactttttcct
gatatttctttgttttttcacacaaaattaTTATcgataacaatgcccac
catcaaacaCGTTCGACGGAACAGCAGAGAATCGCCGGAAGAAcaggttt
ttcttgaatttctcgagttttactttatattttttcatgaaattttgcac
actgatgcaaaatagcaatacctaaaatgtgacagagccagAATTTCAAT
AAACATACTTTTCCAGCCGAAAAAAACtggccggaaaaaccggtttttag
ggattttcttgagattttatccttagttttttctgatcttttgtacaaag
atgcgtattagcaatgcccaaaacatggcaaaTTTTTATCCTGCCAAAAA
TGCCGGTAATCGCCGTTTTTTTCAGAATTAAttgggttttttggacctac
gccggtggaggttctataaattaacctttgtccgttcgttcgtccgtccg
ttcgttaccaacttttctcgagattggctctttcattctttatgattttt
tgcacaaagatgcataactataaaccctcaaatgtgatgaaacccgattt
tcaaaaaaaaaacgggttttttggactttgtgaaaaattggatcattaat
tttttctaatttttgcatgaaagtaggtaacagatggctcaagctgattt
ttgtaaaaaacgaatttttcagctcaaaaaatgcatctttatctataaga
atcactatttataagcatacatcaatgttcttagctgaattactcaattt
tttgttgAGATGTTCTTTGTGAGGGGCTTACGATATTTCGGAATCGCCGA
AattaacccttttttcttcagaattgcggaaatcgggcaaaattcccgCA
AAactccttcggtatttcggaatgctgaaattgtttcggtatcggaaatc
catgagcttttgttttggaatttcggtattataaagtttttcggaattca
tacatgaaaaatcaaatttgatgaaaaattagtcaaaacgaggaaaaata
cccaaaaaagtcggtatcggaattgcaagaaTTTTTTACGGAATAtcgga
aattttagcaaaattattcggtatttcggaaatcacaaaccccgtacgcc
cccatTTCTTTTTCATTCGACCCCCCACTCAATGctcattaaaaaacttt
tttctttttttgatgtgtataagaagcgtaaaagtcgacaaaaaaaacaa
gcaaaagagggctatgaaaaatttccctcccctccccctgtacgcaagta
tatgcttttgagaagaccccctcTTCCCTTTAGTGTGTACGTACTATGGA
CGGCCCCCTAGCTGACCGCATTtcacaaatgacccctcaagatttaagtt
tatccttccaTTGCAAAAGGATTGACTCTTTAAGAGTTAATAGAACTCCA
GAAGAATTGTTTCAAAATGGGGCGATTTTTTCTGAGAGACCCGGTAGATG
GCTATCCACGGAAATTATAGACTTTATATtctaacaaaaatatttattgt
ttgCTAATGGAAGACAAGAAGCCGGAgtggcgtgaaggtccagctgacgt
ggcaataaccgaatatcgttcgtaccgggttccttaagtgacgcaaaaaa
aattccttatTCCCATCCTCCAATCTGAGCTTCTatttttgacactttct
ttgtattgctttgtattgttttgaaagtttttgatgcatttcccgaaatt
tcgaaacttttgccgctgatgggattcgaacccactatatacaaagcacc
tatgattagaacgccagcgccttaaccacgCGGCCATCTAGTCACAACTG
CATAAGGgagttcaaagttccttataaacatggtatttactccaaacgcT
AGCCGGGGGCTaaaaccattgagtttgaagcccgaagggctagagtagaa
tctctaacctttctcaggcaagaaaaagtgaagcctNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAAAAGACCCaccagatca
aaagttaaggggtggtacaggaaaagcccccccctagttctgaaccgccc
ctaaaagcctagtttgaatagggttaagtctCTTATGGGAATTGAATGAT
CACAACCAATTTaatgaagaaaacttttttcctcGGAATAAAAAAGCAAG
GCAGAAAAATCTGAATTGCAAGGATTGTATTGTCTCGACTCGAACTTGTT
TCGACTCGCGATGTTTAAAAATGAAAGCATGTGTCGCCATGATACTTTCA
CAAAAGGAAAAAAGAGCATGTAATGAAGAATCGTTATATGGTAATTAcct
attaaaaacaaaatctttaaaacatgCTGGTTTAAAATTAGTAAAAGAGG
tgtaaattacaaaaaatggcaagcaaaattttataaaaaagtgtggtAAA
TCAATGCCATAAAACTGCTCGATTAGTTAAAGAACCAGAGCcatatatca
atattttgaaagctgttttccattaaaaacctaaaaagtaCATCACTCAG
AGTTCAGTGCTTATGCACTAATCATATGTAcagtaatgattgaaaatttt
ttgtaatttttgtattgtaaaattttagaaattttagaaattatctaata
tttattttcatctttcatCATAAAATGTTGATAATTTAGCAGTCGAGTAA
AAATTAACGCCGGATTAAGGTAAAATTGTAAATTATGTCCCTCTACGACG
GCCTTCTTGACTCCGACCCTAATCTCCTAAATTGTCAAGGTCCTCACAAA
AAGGGAAAAGGCATGCTCAAAATAAATAATCATGGAAAGACCAAACCTGG
TAAATCATGGCTCTTCTTATGACGGACCTTTCTGAGACGGCCCTTTCTAC
GACGACTTTAAgcgctctgaccatagtgaatttttcatagttatcgtgta
taaaatgtatttttctgactgatgtaatgaacaaaactatggcatgttat
acttTTTCTGTTGGgtcaactattcctgaatctgagaattcaaaaattgc
attgaaaaaacttaacgaagaagaaaattaagacACTTTGCGAAGACAAG
TATTTTaactttgaggaccttattttcggcgaagaaaagacattttgaaa
aaaatcttaagatagttcaatcttttgcagataattaaaaaaaaattgaa
ggttaattacccatcgaaactaagcacttttttagGGTAATATCACGCTT
TATTTATGTCTTTTTCAGGTTCATAATATCTTTTTTGTAATTAGATTGCT
aattactcttgatagaataaattcaCAAACAACTTTTAAAGACAGTGTAA
AggaactcaaaacaaaagttttatcttcaaatctcaTAACTGATCTTTTG
ACTATGGTTGAAATTCGTGCTCAAAACAAATACGCATGGAAAAATCAAAT
ACGCGcatggaaaaaaatgaaatctttttGTCGTTACTTTAACGTGTATA
GTTGGAATAATAACAGCTAATttctaaaattgaattttctttcaaaaatt
aaagCGTTAAACCTATTGTTAATAGATAGTTGTATGTCTTTGAGAAAAAA
GCTCTTTTCTTATGCTAATGAGTTCTAAATCGAATGAGACACAATAGCTT
AAGTTTTTACTTTTCCAAGGAGTAAACTTTTCTTTCTGAAACgggcgaaa
aactattgttttgTATTGAACATTGGTGACTATTCCGCagtaaaaatgac
gtcataaatcaaATGAATAAATGAAGTAACGCACAGCAGATTTTGTTATT
CAGCAATTTTCTTTGAGGGATATCTACAAACAGAAAGGTAGGTTTCTGcc
ttatttttcttcttcaaatcaACTTTACACTCAGTTCATAGACAACTAGC
CCGAGTATTATTAATTGtatcaataaaaatttcaaagaactgcGAAATTT
AATAGAATCAACTTCTTCCCGAATAGCCTTTGGGAGATCATTCAAAAGGC
GACTAGCGATCCGCaatgcatacgtcataattattacttttcactttttt
tgacatttgtacgagttgcaatcccacaattcaacgcggcTCAGTTAAAA
ATACGTGCAAGCTgtaatatatcttttgtcaaacgatgcaattaacgtgc
aaaagagattagcgcaaaggttgatgggattggaactcgtacaaacacat
cgagagtaatgattatgtcaaaaataaaatctatttttagattcagcgcg
gtgcgctattgaAAAGGCATTACAGTCTAATTTTTTATCGagcacttttc
aaaatttaaatttcattcattctttTTCCAGTATGAAGTCTACAACAGTT
ATCATTTTCGCCGTCTTGGCTTTATCTTTGGTGGTCGATGGTTACCCAAT
GGAAAATGAAAGTCAGCCCAAAATGGAGCTTCCTAACGTTTTCGTTTTGG
ATGATAATGTGGAAAGCAAAGATCAAGATGTTTTTAGACATAGATGGTAA
GACTTGTATTCTTaggttttcattttttgatttttcgaaaGGTCCCTCCG
GACCTTATTTAGGACCCCCGCCCTGTTCattaacttttgaaaatgtaTTC
AGCTGTCAAAAGAAGGGTTCCTTATTTTGTCTGATATTAGTCTATAAAAC
TCTTATTCTGGGGTTTTAGAGGTACAATACCCCCACCTGGTGTTTATCAA
ACTTTGAAGATCTTTCCAAAACGACCCCCCCCTTCCGCTGAAAAAAatag
aatgggctcttccagaaaatgcctgtacatggggggtggaggataaattg
tccgggggtagctaaaaatcatcaaaatttgccttgtccggggagtaaat
ttgctctgtccgggggtaatttgggttgtccgggggtaaaacccgttgtc
cgggggccaaaagtcactttttcCGGGGGATAAATCACTAAATATAAATC
ACTTGTtatatcccccccccccccccccatattcaatttttttctgaaaa
agcccaaTCTAAGGTACCACCTTCCTGAAGAACTTCCATCAAAGAGGAAA
GAGGATGTATATAACTTTGCCCGGGGGCAATGATTAAATGTGAATCGACA
GTGAATCAACCTTTATCTTTCAGCACCAGTCTATATTGCATTTGGGATTC
GGAACTTTGCGAACATTGCCCACAACACATACCATAAATTGTAAATCAGC
CTTCAAAAAAACCCGAATCGACAACGAAACaacaacagaaaaaatatttt
ttttatgaattatttATGTTGTATTTATCGTATAATGTATCAAtttatat
cgttggaaagataattcagCCCTTTAAGTTTCCACGGCTTTAaaatttga
caaccttcttaacctaaggttgaactaccactggtgtaaaaatgaacgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028850-exon-sc0000708-1491911889:108555..108682 | TCONS_00028850-exon-sc0000708-1491911889:108555..108682 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1510915933:108555..108682 | TCONS_00028850-exon-sc0000708-1510915933:108555..108682 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1575043694:108555..108682 | TCONS_00028850-exon-sc0000708-1575043694:108555..108682 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1491911889:109355..109477 | TCONS_00028850-exon-sc0000708-1491911889:109355..109477 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1510915933:109355..109477 | TCONS_00028850-exon-sc0000708-1510915933:109355..109477 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1575043694:109355..109477 | TCONS_00028850-exon-sc0000708-1575043694:109355..109477 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1491911889:117086..117250 | TCONS_00028850-exon-sc0000708-1491911889:117086..117250 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1510915933:117086..117250 | TCONS_00028850-exon-sc0000708-1510915933:117086..117250 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1575043694:117086..117250 | TCONS_00028850-exon-sc0000708-1575043694:117086..117250 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1491911889:117878..118153 | TCONS_00028850-exon-sc0000708-1491911889:117878..118153 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1510915933:117878..118153 | TCONS_00028850-exon-sc0000708-1510915933:117878..118153 | Clytia hemisphaerica | exon |
| TCONS_00028850-exon-sc0000708-1575043694:117878..118153 | TCONS_00028850-exon-sc0000708-1575043694:117878..118153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:108555..118153 + |
Blast
BLAST of TCONS_00028850 vs. Swiss-Prot (Human)
Match: OIT3 (Oncoprotein-induced transcript 3 protein OS=Homo sapiens GN=OIT3 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 2.199e-19 Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 2
Query: 2 VDHNECLVSNGGCSHACINTKGSFLCSCPIGWILKDDKKTCEDHDECLVLNGGCSHACINTKGSFLCSCPIGWILKDDKKTCEV 253
D NEC +NGGCS C+N K S+ C C +G +L+ D KTCED + C NGGCSH+C+ ++ + C CP G +L +D TC+V
Sbjct: 181 FDENECEQNNGGCSEICVNLKNSYRCECGVGRVLRSDGKTCEDVEGCHNNNGGCSHSCLGSEKGYQCECPRGLVLSEDNHTCQV 264
The following BLAST results are available for this feature:
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