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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028852 ID=TCONS_00028852|Name=TCONS_00028852|organism=Clytia hemisphaerica|type=transcript|length=3641bpRun BLAST on NCBI protein sequence of TCONS_00028852-protein >TCONS_00028852-protein ID=TCONS_00028852-protein|Name=TCONS_00028852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=768bp MSSKQEIQDVNTRFKRTRRYDTAGKYRIGPTFITKARLSYLDANKPAKLSRun BLAST on NCBI transcript from alignment at sc0000708:120758..132472+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028852 ID=TCONS_00028852|Name=TCONS_00028852|organism=Clytia hemisphaerica|type=transcript|length=11715bp|location=Sequence derived from alignment at sc0000708:120758..132472+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000708:120758..132472+ >TCONS_00028852 ID=TCONS_00028852|Name=TCONS_00028852|organism=Clytia hemisphaerica|type=CDS|length=20763bp|location=Sequence derived from alignment at sc0000708:120758..132472+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028852 vs. Swiss-Prot (Human)
Match: ANK3 (Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 2.213e-17 Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 2
Query: 1079 KTEIDLAFLQSLINSGVDINAADEYGQTALHAMVRDWHPDVVSFIVRNNADVNKADKWGRTPLHLAAAINSVEIAKILCLSGARVDLETDSEHQTPMHYAAKYNSLATMKLLIKFDGSITQRDAQNRTVLFLAAEQGSTETAQFLLDIGAPAGIYDSEGNSCI 1567
K ++D+A +L+ G D NA G ++H ++ H D+VS ++ NA+VN ++K G TPLHLAA + V +A++L GA VD +T + TP+H Y ++ + L++ + + T L AA+QG T LL A GN+ +
Sbjct: 641 KNQMDIAT--TLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGY-TPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNGNTAL 800 The following BLAST results are available for this feature:
BLAST of TCONS_00028852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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