TCONS_00028860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028860
Unique NameTCONS_00028860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028860 ID=TCONS_00028860|Name=TCONS_00028860|organism=Clytia hemisphaerica|type=transcript|length=492bp
tacaatttgaaaatatatttaaagagcagaaatatttattatatctattt
caaataaaaaagtttccatgAAAATCTGTTCATATTAAAACAATAAACAA
CAACATagtataaaatttcatttcataaaatCTCCGCCCAATCTAATATT
GGTTACCGCCCTCACTCGGATAGTAAATCTAGGACATCGTCCTAAACTAC
CCCTCTTAGCTTTCAACTcgcaaaacaagatggcggaccaAGAGTAAGTG
TaattaaaattctttgaattccCCAAATATCCAAGTAATCTGACACATAT
TGAAAGTGATAAAAGGCTCAGCCATCACTGAGAGGATAATGGGTCATAAC
TAAGTTACTCATTTCACTTCGAGATACAGGAACTAGCTGGTATAGCCATA
GATTCTTGTTTTGCTCGTTGTTTTGTCAGATCAGAATAGAAAGAAACAAT
AGGTTAAGCCCCCAGGGCTAACCGTTCCACAATACTTATTAC
Run BLAST on NCBI

transcript from alignment at sc0000708:38722..39213

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028860 ID=TCONS_00028860|Name=TCONS_00028860|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0000708:38722..39213 (Clytia hemisphaerica)
GTAATAAGTATTGTGGAACGGTTAGCCCTGGGGGCTTAACCTATTGTTTC
TTTCTATTCTGATCTGACAAAACAACGAGCAAAACAAGAATCTATGGCTA
TACCAGCTAGTTCCTGTATCTCGAAGTGAAATGAGTAACTTAGTTATGAC
CCATTATCCTCTCAGTGATGGCTGAGCCTTTTATCACTTTCAATATGTGT
CAGATTACTTGGATATTTGGggaattcaaagaattttaattACACTTACT
CTtggtccgccatcttgttttgcgAGTTGAAAGCTAAGAGGGGTAGTTTA
GGACGATGTCCTAGATTTACTATCCGAGTGAGGGCGGTAACCAATATTAG
ATTGGGCGGAGattttatgaaatgaaattttatactATGTTGTTGTTTAT
TGTTTTAATATGAACAGATTTTcatggaaacttttttatttgaaatagat
ataataaatatttctgctctttaaatatattttcaaattgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016378XLOC_016378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028860-exon-sc0000708-1491911889:38722..39213TCONS_00028860-exon-sc0000708-1491911889:38722..39213Clytia hemisphaericaexon
TCONS_00028860-exon-sc0000708-1510915933:38722..39213TCONS_00028860-exon-sc0000708-1510915933:38722..39213Clytia hemisphaericaexon
TCONS_00028860-exon-sc0000708-1575043694:38722..39213TCONS_00028860-exon-sc0000708-1575043694:38722..39213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:38722..39213 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.51307	3.54521	6.95518	6.94343	4.30515	2.16975	1.78896	3.52169	2.19991	0.469502	3.23153	2.05613	2.93286	4.54811	1.79485	2.59735	3.19973	3.49923	0.978199	2.11162	3.02018	2.12836	5.1746	3.26699	7.56478	9.22377	0.859488	1.46763	1.80886	1.55941
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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