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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028865 ID=TCONS_00028865|Name=TCONS_00028865|organism=Clytia hemisphaerica|type=transcript|length=1948bp
TACTGATTTACCCACTAACCAATCAATTTAAATTACTTTTTAGAGAAAGT
AGACACGAAACAGATTAACGAGGAAGCTTAGctagatgaagaccaaagta
TACATGGAGTTGATATTATGGTAAAAGATGaattttgtacaaaatttgTG
TTACTAACTTTATTTCCTTTCCAAGGTCCTACTTTAGCCAGGTAGCTATG
ATGACCAAAAAAACTGAAAGTGAGTGACATAGTTAATAACAGGTCCCACT
GCAAATTTTAATTCTTCCAACAACCAGTCATATATAAATACAACCTATCA
ATCAAGAATagagacaaatttattttccgatactcggagtttcgtgccgt
ttcaggcagtcttcagtcagaatcggaaaataaatttgtatctattcttg
actgatatatcgctctaccgatggtatagagcactttctTGAATCGCAAA
TCAGATTTGCATATAAATACAACCTAAGTATGTCTCCAAACAAAATTGGA
TTGATAATAACATCTAATACTGAAGCATGGAAAGGAGAAGCTGGCAAAGG
AGAGTACTACAAAAAACGTTTCTCTAAAGTTGATAATACTTTTGATTATG
AGGTCATTTATGGTGTAACTGGGTCTTTACCGGATATTTCCGAGTTTCCA
AATTACCTTGGATTTGTGATCAGCGGTTCACATCATAGTGTAAACGATCC
TTATCAATGGATCATGAATTTACAAAACTTTATCATTCAACTCGATCAAT
ATAACAAAGAAACCGATAATAAGCCTGTCCGACTTTTCGGAATTTGTTTT
GGACATCAAATTATAGCAAAGACATTTGGTGGACTTGTCCAACCAATCGC
AAATAATAAATGGATATACGGTGCTGAGAAGATCATCTTCAACTCAACGA
TCACACCTGAATCTTGGTTTCAAAAGGCATTGAAGTGTGAAAATGAAGTA
ATGATGTGTCAAGTTCATAGTGAGGAAGTTAGCAAAGTTCCTAATAACGC
CATTGTCGTTGCTGCATCAAATACGTGTGAAACAGAGGCTTTGGCATACG
GTGGTAACATATTTTCAACACAAGGGCATCCGGAATTTGAGATTGAAGTG
ATGACTAATCTAGTTGGTTGCAACTTTCTTAAAAACAATATGATTACTTC
TGAAGAATTTGAAATTGGAAAGCAACAAGTGGAAACGGTACCTTATGATT
TGGTGACCGGTTTTGTGCTAGGATTTCTTAAACACTGAAAGCGTTTGGAA
TTTCTTATCACGTATTCGCCTCGTAGATCTGGGTGATACCGATGGATGTT
TTCTCACACCAGAGACATTTCTTGGCGAGTTCAAATATTCATATCatcat
ccccttctcacagacccggtaggatcttttcagccagttggggtaaaaat
aacgaactgaaactcgatggggatcgatattcccatatttttttatggct
agggatttaaattccattgttttcaagtcagaaaatttataGGAGATTGG
AAAAATAGCatgatattttgcagtgagtGCATATTTTGCTTTactatttt
cagtggggacaaaaattgaagtaTAATTCCACAGGGGACGATGtgttggc
caatttttccagtgggaaggggtcccagtgggtctgtgagaaggggttat
aatataaaaaagtaTTCCTTTTCTCTGTTATCAAAGTTTGTAAACATTTA
ACTATCAAGAATCCATTCCATAAAAAGTAAGATAATGAAACTACTGCACT
TTATTACACGAGAtacttaaatgaaaatatttttctctagtTTGTAATTT
CATACATTGTACATAAATAAGATACCATTACCGACACCCTAACATCCATC
ACTTATCATCTTTAGTTTCATCTTTGCTCCCAGATTATAAATATATATGT
TaaactagacgatgctatcgtccgttttaGAGGGTCAGTAACCGCGGG Run BLAST on NCBI protein sequence of TCONS_00028865-protein >TCONS_00028865-protein ID=TCONS_00028865-protein|Name=TCONS_00028865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MSPNKIGLIITSNTEAWKGEAGKGEYYKKRFSKVDNTFDYEVIYGVTGSL
PDISEFPNYLGFVISGSHHSVNDPYQWIMNLQNFIIQLDQYNKETDNKPV
RLFGICFGHQIIAKTFGGLVQPIANNKWIYGAEKIIFNSTITPESWFQKA
LKCENEVMMCQVHSEEVSKVPNNAIVVAASNTCETEALAYGGNIFSTQGH
PEFEIEVMTNLVGCNFLKNNMITSEEFEIGKQQVETVPYDLVTGFVLGFL
KH Run BLAST on NCBI transcript from alignment at sc0000708:78561..80508 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028865 ID=TCONS_00028865|Name=TCONS_00028865|organism=Clytia hemisphaerica|type=transcript|length=1948bp|location=Sequence derived from alignment at sc0000708:78561..80508 (Clytia hemisphaerica)
CCCGCGGTTACTGACCCTCtaaaacggacgatagcatcgtctagtttAAC
ATATATATTTATAATCTGGGAGCAAAGATGAAACTAAAGATGATAAGTGA
TGGATGTTAGGGTGTCGGTAATGGTATCTTATTTATGTACAATGTATGAA
ATTACAAactagagaaaaatattttcatttaagtaTCTCGTGTAATAAAG
TGCAGTAGTTTCATTATCTTACTTTTTATGGAATGGATTCTTGATAGTTA
AATGTTTACAAACTTTGATAACAGAGAAAAGGAAtacttttttatattat
aaccccttctcacagacccactgggaccccttcccactggaaaaattggc
caacaCATCGTCCCCTGTGGAATTAtacttcaatttttgtccccactgaa
aatagtAAAGCAAAATATGCactcactgcaaaatatcatGCTATTTTTCC
AATCTCCtataaattttctgacttgaaaacaatggaatttaaatccctag
ccataaaaaaatatgggaatatcgatccccatcgagtttcagttcgttat
ttttaccccaactggctgaaaagatcctaccgggtctgtgagaaggggat
gatGATATGAATATTTGAACTCGCCAAGAAATGTCTCTGGTGTGAGAAAA
CATCCATCGGTATCACCCAGATCTACGAGGCGAATACGTGATAAGAAATT
CCAAACGCTTTCAGTGTTTAAGAAATCCTAGCACAAAACCGGTCACCAAA
TCATAAGGTACCGTTTCCACTTGTTGCTTTCCAATTTCAAATTCTTCAGA
AGTAATCATATTGTTTTTAAGAAAGTTGCAACCAACTAGATTAGTCATCA
CTTCAATCTCAAATTCCGGATGCCCTTGTGTTGAAAATATGTTACCACCG
TATGCCAAAGCCTCTGTTTCACACGTATTTGATGCAGCAACGACAATGGC
GTTATTAGGAACTTTGCTAACTTCCTCACTATGAACTTGACACATCATTA
CTTCATTTTCACACTTCAATGCCTTTTGAAACCAAGATTCAGGTGTGATC
GTTGAGTTGAAGATGATCTTCTCAGCACCGTATATCCATTTATTATTTGC
GATTGGTTGGACAAGTCCACCAAATGTCTTTGCTATAATTTGATGTCCAA
AACAAATTCCGAAAAGTCGGACAGGCTTATTATCGGTTTCTTTGTTATAT
TGATCGAGTTGAATGATAAAGTTTTGTAAATTCATGATCCATTGATAAGG
ATCGTTTACACTATGATGTGAACCGCTGATCACAAATCCAAGGTAATTTG
GAAACTCGGAAATATCCGGTAAAGACCCAGTTACACCATAAATGACCTCA
TAATCAAAAGTATTATCAACTTTAGAGAAACGTTTTTTGTAGTACTCTCC
TTTGCCAGCTTCTCCTTTCCATGCTTCAGTATTAGATGTTATTATCAATC
CAATTTTGTTTGGAGACATACTTAGGTTGTATTTATATGCAAATCTGATT
TGCGATTCAagaaagtgctctataccatcggtagagcgatatatcagtca
agaatagatacaaatttattttccgattctgactgaagactgcctgaaac
ggcacgaaactccgagtatcggaaaataaatttgtctctATTCTTGATTG
ATAGGTTGTATTTATATATGACTGGTTGTTGGAAGAATTAAAATTTGCAG
TGGGACCTGTTATTAACTATGTCACTCACTTTCAGTTTTTTTGGTCATCA
TAGCTACCTGGCTAAAGTAGGACCTTGGAAAGGAAATAAAGTTAGTAACA
caaattttgtacaaaattCATCTTTTACCATAATATCAACTCCATGTAta
ctttggtcttcatctagCTAAGCTTCCTCGTTAATCTGTTTCGTGTCTAC
TTTCTCTAAAAAGTAATTTAAATTGATTGGTTAGTGGGTAAATCAGTA Coding sequence (CDS) from alignment at sc0000708:78561..80508 >TCONS_00028865 ID=TCONS_00028865|Name=TCONS_00028865|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0000708:78561..80508 (Clytia hemisphaerica)
TCAGTGTTTAAGAAATCCTAGCACAAAACCGGTCACCAAATCATAAGGTA
CCGTTTCCACTTGTTGCTTTCCAATTTCAAATTCTTCAGAAGTAATCATA
TTGTTTTTAAGAAAGTTGCAACCAACTAGATTAGTCATCACTTCAATCTC
AAATTCCGGATGCCCTTGTGTTGAAAATATGTTACCACCGTATGCCAAAG
CCTCTGTTTCACACGTATTTGATGCAGCAACGACAATGGCGTTATTAGGA
ACTTTGCTAACTTCCTCACTATGAACTTGACACATCATTACTTCATTTTC
ACACTTCAATGCCTTTTGAAACCAAGATTCAGGTGTGATCGTTGAGTTGA
AGATGATCTTCTCAGCACCGTATATCCATTTATTATTTGCGATTGGTTGG
ACAAGTCCACCAAATGTCTTTGCTATAATTTGATGTCCAAAACAAATTCC
GAAAAGTCGGACAGGCTTATTATCGGTTTCTTTGTTATATTGATCGAGTT
GAATGATAAAGTTTTGTAAATTCATGATCCATTGATAAGGATCGTTTACA
CTATGATGTGAACCGCTGATCACAAATCCAAGGTAATTTGGAAACTCGGA
AATATCCGGTAAAGACCCAGTTACACCATAAATGACCTCATAATCAAAAG
TATTATCAACTTTAGAGAAACGTTTTTTGTAGTACTCTCCTTTGCCAGCT
TCTCCTTTCCATGCTTCAGTATTAGATGTTATTATCAATCCAATTTTGTT
TGGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028865-exon-sc0000708-1491911889:78561..80508 | TCONS_00028865-exon-sc0000708-1491911889:78561..80508 | Clytia hemisphaerica | exon |
| TCONS_00028865-exon-sc0000708-1510915933:78561..80508 | TCONS_00028865-exon-sc0000708-1510915933:78561..80508 | Clytia hemisphaerica | exon |
| TCONS_00028865-exon-sc0000708-1575043694:78561..80508 | TCONS_00028865-exon-sc0000708-1575043694:78561..80508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:78561..80508 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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