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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028867 ID=TCONS_00028867|Name=TCONS_00028867|organism=Clytia hemisphaerica|type=transcript|length=2261bp
gtatttttttaatattttaaattatcaatcctagttaaaaatcaaaatat
ttacagGTGAAAAGGAAAGTTAGCggtttataaaaataaaaatcaccgga
aaattatcaacaagaatAATGGTAGACAGGTCATCGACATACAGATTGTC
ATCATTATTTGAACAATCAAATACATTCTAGTTTCATTCCTTCGTTGTAA
TTAATTTTCCATATGACACTCCGTTCATAATACCCCAAAAATGGAACTAA
AAAGATACACACACTATAAAAACCcaatataaaatgtttttaaaaaccaA
CGACAATTTGTGAATCTGACTAAGTCAAAAGCGCCGTGTATATCGCCTCA
AACTAAACAATGTCATCAGCGAGATtctgtatctggaattctctacggct
acgtttaaagtggcgagggaaatggcgagtaaggcaaataatggcgggtg
aaagcaagttcgatatttgacgtaaggcattatgtcgactttgcttatac
ggtgctttggtgtttttcccgtacagagcaaaatagacaacgacatgtcg
cctttggtgatGATCCGCatgggcagccccgcaaccgtagccgtagaata
tctccgatacataatctctcTATTGAGGCGGAGGTGGTGGATAACTAGAT
TGTTTCGGGAACTGAACATATCCTAGCTCAAAATCTAGGAATAGTTTCTC
AACAGTGCTTCTTAAGTAAGCTTTTTTCTTAGAGTCTAGTTTCTTCATAC
GACCAACCAGACTTAAGCAATAATGCTCATCTTCATCAAGAGATTGTTGC
TTGGTAACCCCTGTTGATGAAGCGCCATTCCCTGCATTAGGCGTCGAGTT
ATTGATTGGTTGCTGTGAGTGTAGTAATAGTGGCTTATCGTAAGAATGCT
GTTTCGGGGTATGAACTTGATTATGGTTTGAGGAGATGTTGGTGGGCGGT
GGTGGGGTGTACATTGAGGGCGATTTGTTGTTAATGTTATTGTTCGTGTG
GTTTTCAATGTATTTTCGTTTCCGGATTGCAGAGTGCATACTTCCGGATG
TGGATTCGAGATCAATTACACTGGAAACTGACGTAACGATAGGTAAGGGG
TTGTGTGGTTCCTCCTCGTGGTTTGAAGCTGAGCTTGAAGAATCCGCTTT
TCCACCAGAATCCCCAATGGGAATCATTGAGACTCGTGTGACGTCATCGT
TATCATCTCCATGTTGTGTCATAAAATGATGAGATGACTCACCACTGCCG
TTTTCTTGGTGTTGTACATCGTCATCATCGTAAGATACTGAGAAGTCTCT
TTTATTATCGTGTTTATATTGAAAAGGAGCATCTCTCGTTTTAATGTAAG
GAACTAACCAAtgtaaaaagtctaattttatGTCTTTAGTTTCAATGGTC
CAGTATCCTTCTTTGATGCGTTTCAAATACCGAGAAAGTCGGGTACGAAT
AGTCTCGTAACGTCTTTTTGTATCCTCGATACGAACGTTTAAAATATCGC
TAATTTTCTCCCAGCATTCTTCTTTTCGTGTTTTATCGCGAAAATCCTCA
TGATTTTTGTCGTAGACACCTGGAAAATCACGTATAACTTCCATGAATTC
TTCATCTGTTAAACGTACCTCGGTTGAGCTTTTAGACACACCTTGATGCT
CATTGTTGGTCGCTGAATTGAGTTGTTGTTGCAAATTTGGCTCTTCTGGG
TCTCTCATCATATTTCAAATGTCAGTAGATGAATCACTAACtgtttgaga
tattttttatGTTGATGAATAAAGATGCAGTCCGTCTTTTATGTTccgtt
gattttatttttgtgacATCCAAAAGCAAGATATGTTACTGACTGGTCAA
GGTCTTTGGTTGTATGTTGCAAGATAATAAGAATTGCAATGCGAGACAGA
ATTGAGAATTGCAATGTATCCTTCCAGGCTTTCAATCTACCGACCTGGTA
TACCAATAGGAAgttcttttagaatttcaaagCAATATTGTAGTTGTATA
ATTCGAGTTCTTTACAACGTTCGAAAAATTTGTATACATGAAGAAGCTTC
TTTCATTCCTCGATCATAACATCATCATAGAGAAGAGAAAGACAAAATCA
TAAACGGTGAACGATTTAGTTTGTGTATTATGTTATTCTTTTCACGATGA
GGCCGTTTCTTGAATGACGGTACGTTTCACCGATTTTACACGATTTATGA
ATAAAATCGGAATTCAACTTTTCCAACCTCTTTTCGATTATGATAACAAA
TTGGTCGGGGA Run BLAST on NCBI protein sequence of TCONS_00028867-protein >TCONS_00028867-protein ID=TCONS_00028867-protein|Name=TCONS_00028867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MMRDPEEPNLQQQLNSATNNEHQGVSKSSTEVRLTDEEFMEVIRDFPGVY
DKNHEDFRDKTRKEECWEKISDILNVRIEDTKRRYETIRTRLSRYLKRIK
EGYWTIETKDIKLDFLHWLVPYIKTRDAPFQYKHDNKRDFSVSYDDDDVQ
HQENGSGESSHHFMTQHGDDNDDVTRVSMIPIGDSGGKADSSSSASNHEE
EPHNPLPIVTSVSSVIDLESTSGSMHSAIRKRKYIENHTNNNINNKSPSM
YTPPPPTNISSNHNQVHTPKQHSYDKPLLLHSQQPINNSTPNAGNGASST
GVTKQQSLDEDEHYCLSLVGRMKKLDSKKKAYLRSTVEKLFLDFELGYVQ
FPKQSSYPPPPPQ Run BLAST on NCBI transcript from alignment at sc0000708:96847..99107 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028867 ID=TCONS_00028867|Name=TCONS_00028867|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at sc0000708:96847..99107 (Clytia hemisphaerica)
TCCCCGACCAATTTGTTATCATAATCGAAAAGAGGTTGGAAAAGTTGAAT
TCCGATTTTATTCATAAATCGTGTAAAATCGGTGAAACGTACCGTCATTC
AAGAAACGGCCTCATCGTGAAAAGAATAACATAATACACAAACTAAATCG
TTCACCGTTTATGATTTTGTCTTTCTCTTCTCTATGATGATGTTATGATC
GAGGAATGAAAGAAGCTTCTTCATGTATACAAATTTTTCGAACGTTGTAA
AGAACTCGAATTATACAACTACAATATTGctttgaaattctaaaagaacT
TCCTATTGGTATACCAGGTCGGTAGATTGAAAGCCTGGAAGGATACATTG
CAATTCTCAATTCTGTCTCGCATTGCAATTCTTATTATCTTGCAACATAC
AACCAAAGACCTTGACCAGTCAGTAACATATCTTGCTTTTGGATgtcaca
aaaataaaatcaacggAACATAAAAGACGGACTGCATCTTTATTCATCAA
CataaaaaatatctcaaacaGTTAGTGATTCATCTACTGACATTTGAAAT
ATGATGAGAGACCCAGAAGAGCCAAATTTGCAACAACAACTCAATTCAGC
GACCAACAATGAGCATCAAGGTGTGTCTAAAAGCTCAACCGAGGTACGTT
TAACAGATGAAGAATTCATGGAAGTTATACGTGATTTTCCAGGTGTCTAC
GACAAAAATCATGAGGATTTTCGCGATAAAACACGAAAAGAAGAATGCTG
GGAGAAAATTAGCGATATTTTAAACGTTCGTATCGAGGATACAAAAAGAC
GTTACGAGACTATTCGTACCCGACTTTCTCGGTATTTGAAACGCATCAAA
GAAGGATACTGGACCATTGAAACTAAAGACataaaattagactttttaca
TTGGTTAGTTCCTTACATTAAAACGAGAGATGCTCCTTTTCAATATAAAC
ACGATAATAAAAGAGACTTCTCAGTATCTTACGATGATGACGATGTACAA
CACCAAGAAAACGGCAGTGGTGAGTCATCTCATCATTTTATGACACAACA
TGGAGATGATAACGATGACGTCACACGAGTCTCAATGATTCCCATTGGGG
ATTCTGGTGGAAAAGCGGATTCTTCAAGCTCAGCTTCAAACCACGAGGAG
GAACCACACAACCCCTTACCTATCGTTACGTCAGTTTCCAGTGTAATTGA
TCTCGAATCCACATCCGGAAGTATGCACTCTGCAATCCGGAAACGAAAAT
ACATTGAAAACCACACGAACAATAACATTAACAACAAATCGCCCTCAATG
TACACCCCACCACCGCCCACCAACATCTCCTCAAACCATAATCAAGTTCA
TACCCCGAAACAGCATTCTTACGATAAGCCACTATTACTACACTCACAGC
AACCAATCAATAACTCGACGCCTAATGCAGGGAATGGCGCTTCATCAACA
GGGGTTACCAAGCAACAATCTCTTGATGAAGATGAGCATTATTGCTTAAG
TCTGGTTGGTCGTATGAAGAAACTAGACTCTAAGAAAAAAGCTTACTTAA
GAAGCACTGTTGAGAAACTATTCCTAGATTTTGAGCTAGGATATGTTCAG
TTCCCGAAACAATCTAGTTATCCACCACCTCCGCCTCAATAgagagatta
tgtatcggagatattctacggctacggttgcggggctgcccatGCGGATC
atcaccaaaggcgacatgtcgttgtctattttgctctgtacgggaaaaac
accaaagcaccgtataagcaaagtcgacataatgccttacgtcaaatatc
gaacttgctttcacccgccattatttgccttactcgccatttccctcgcc
actttaaacgtagccgtagagaattccagatacagaATCTCGCTGATGAC
ATTGTTTAGTTTGAGGCGATATACACGGCGCTTTTGACTTAGTCAGATTC
ACAAATTGTCGTtggtttttaaaaacattttatattgGGTTTTTATAGTG
TGTGTATCTTTTTAGTTCCATTTTTGGGGTATTATGAACGGAGTGTCATA
TGGAAAATTAATTACAACGAAGGAATGAAACTAGAATGTATTTGATTGTT
CAAATAATGATGACAATCTGTATGTCGATGACCTGTCTACCATTattctt
gttgataattttccggtgatttttatttttataaaccGCTAACTTTCCTT
TTCACctgtaaatattttgatttttaactaggattgataatttaaaatat
taaaaaaatac Coding sequence (CDS) from alignment at sc0000708:96847..99107 >TCONS_00028867 ID=TCONS_00028867|Name=TCONS_00028867|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000708:96847..99107 (Clytia hemisphaerica)
ATGATGAGAGACCCAGAAGAGCCAAATTTGCAACAACAACTCAATTCAGC
GACCAACAATGAGCATCAAGGTGTGTCTAAAAGCTCAACCGAGGTACGTT
TAACAGATGAAGAATTCATGGAAGTTATACGTGATTTTCCAGGTGTCTAC
GACAAAAATCATGAGGATTTTCGCGATAAAACACGAAAAGAAGAATGCTG
GGAGAAAATTAGCGATATTTTAAACGTTCGTATCGAGGATACAAAAAGAC
GTTACGAGACTATTCGTACCCGACTTTCTCGGTATTTGAAACGCATCAAA
GAAGGATACTGGACCATTGAAACTAAAGACataaaattagactttttaca
TTGGTTAGTTCCTTACATTAAAACGAGAGATGCTCCTTTTCAATATAAAC
ACGATAATAAAAGAGACTTCTCAGTATCTTACGATGATGACGATGTACAA
CACCAAGAAAACGGCAGTGGTGAGTCATCTCATCATTTTATGACACAACA
TGGAGATGATAACGATGACGTCACACGAGTCTCAATGATTCCCATTGGGG
ATTCTGGTGGAAAAGCGGATTCTTCAAGCTCAGCTTCAAACCACGAGGAG
GAACCACACAACCCCTTACCTATCGTTACGTCAGTTTCCAGTGTAATTGA
TCTCGAATCCACATCCGGAAGTATGCACTCTGCAATCCGGAAACGAAAAT
ACATTGAAAACCACACGAACAATAACATTAACAACAAATCGCCCTCAATG
TACACCCCACCACCGCCCACCAACATCTCCTCAAACCATAATCAAGTTCA
TACCCCGAAACAGCATTCTTACGATAAGCCACTATTACTACACTCACAGC
AACCAATCAATAACTCGACGCCTAATGCAGGGAATGGCGCTTCATCAACA
GGGGTTACCAAGCAACAATCTCTTGATGAAGATGAGCATTATTGCTTAAG
TCTGGTTGGTCGTATGAAGAAACTAGACTCTAAGAAAAAAGCTTACTTAA
GAAGCACTGTTGAGAAACTATTCCTAGATTTTGAGCTAGGATATGTTCAG
TTCCCGAAACAATCTAGTTATCCACCACCTCCGCCTCAATAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028867-exon-sc0000708-1491911889:96847..99107 | TCONS_00028867-exon-sc0000708-1491911889:96847..99107 | Clytia hemisphaerica | exon |
| TCONS_00028867-exon-sc0000708-1510915933:96847..99107 | TCONS_00028867-exon-sc0000708-1510915933:96847..99107 | Clytia hemisphaerica | exon |
| TCONS_00028867-exon-sc0000708-1575043694:96847..99107 | TCONS_00028867-exon-sc0000708-1575043694:96847..99107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:96847..99107 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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