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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028872 ID=TCONS_00028872|Name=TCONS_00028872|organism=Clytia hemisphaerica|type=transcript|length=2281bp
CCGCTGATACgcctcgcacccaaaacgccttAGAACCACACTCTTCCACG
CTTAAcactcaaaataaaatatcaaaccCAGATCTGCCTTTTAAGAAATA
ATTTGTTGCACCGAAAATGAAATAGAGCCCTGACGTTCTCACTGTTCCGT
GTTTCACCGAATACAAAATAGAACCGTACCCCTTTACCCAGGCTATCGGT
ATTAGCCCTACAGTGATTTTGGACTTCTCATCTGATCTGAGACAAAATCC
Agtcttcaaatgctaacaaatgtgtcaagggagtgatttacagttatagt
ttcaaaagtaaagcctttttacaagaacaattctataaaaacacaaggct
gaaatttggccacaACCTAAGAACAAGTCAAAAACAAtgtgagcctcaga
tttcagaaattgctGAGAAGTACAagatttccattttaattaactgaaaa
actcataaaattcaaaacagcCCAGCCAGAGCCATAAGTTATTGGtgttt
tataaaaaacagtGTATCTAAGGAAACTGCTCTCATATgctattttacta
atgtacacggtTGTTTAGTAGCATCATGGAATTAACATAGGCACTGGATT
AACAACTGACTGATTTTTACTGGTATCTCATGTTCCAGCCTTGttcgcag
taatgacattattgttcaccctccttcaaccattaaaatgatttttcata
gCGTTTTCATTGCacttctcatcaaaatacacttatccaattcccaaatg
agactttaagctCTCCTCCGAGACTTAAACTCATCTAATTAATTGCTAGT
TAtgcgtcgttatgacgttttaaaatgcaagaaagatgcaaaaacatatg
ctatttataagaaatgaataatgaaaccagaattttttaaacttgaacct
caaaaaatccaccgtgccaccaaaagattttcataccacagtggagctat
cAGACTCACGCCTAATGTATGTCAATTTCAGCTCTTCTCAGAAAgttatt
cccaattcaaaatttcgtgtcattataagcatttgatttgattttactcg
tcttatgatttttttctcacaccagatttcataaatgtttccgcttggta
ttctagcatttattttcaaactttttaccagcaaaagtacgaatagaaaa
agttagagaacattttagaaataagagtattaatcattttcaaaatcaga
gtcctcCGAGCCGCCATGACATTTATCCTTTGCCGACAAATTCagtacat
cgattgttttctgaaacaaaagaaagacaatacttggctctccaccgttt
cataccatgtttatccagagtctctataataagtCCATGGTTGCATAACT
ACTCAAATACTTTGTGTTAGGTGATTGTTTTAACCTACGTGGAGCGTTTA
ATAACTACTTGTAgtataaaaaagggaatttcctaaAAAAGAGATTTTCC
TAGATTCAttagggataagaaaaagacaaactgagctTTCAAAATCGATA
ATCAGATCAATTAGCTcaggaaaattctttttgatgatgataaaacgaGA
GAACGTCAACATAAGAATGCTACCGGGACACTatttaagcggaactaaaa
gactgaaaaacgcgcgtaaaattatgagatgtttgcccaacttccttata
cGTGAAGCTATGGATGCCATCCTTGGTCGACCTTACGATACTGGCTATAT
TATAGACTAGATCCTAACATCTCCCTTAATACAATGAATAATACCATCAA
TAGTTTAAACGTTCACATCATGTTTCAAACTGTTTTGGCTTACGAACCTC
GCGCCTACTTCTAGTTGTGTATCTCATCTCATCACTGTCTTTTACGCTTT
CCTGTTTATAAAATCACTCATCTCCATATTGTAAGGTACTGTTCCGTCTG
ACCCACCGTCAGAGCCTGTTAAATCATAGGGAATAGTGGAATAGTGTCTG
ATTCAGAACCTTCTAAAAGCTCATTTTCTTTGGGATTGGGGGTTTGAGGG
GCCCTGGTGGGGAGCTAGGGGCAAGGAGACCCTTTCTCTAGGTAGGTGAC
TAGGTGTTGGCCTGATGACTGTACACCTTTCTCAGTTGATttattttctc
aatattttgctGTTAACGTTTACGATCATGACGTGTATGATCTTGGGGCC
ACTTAATCTAGGACCGTTCCTTTTGCTGAcattgttttattttagcgTCT
TGTATTGCCACTTTACTACCTGTAACAAAAAGTTCTAGTtttgtaatttg
taatttcaCATCGTATGGTAACTTTTCTGGG Run BLAST on NCBI transcript from alignment at sc0000708:161108..163388 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028872 ID=TCONS_00028872|Name=TCONS_00028872|organism=Clytia hemisphaerica|type=transcript|length=2281bp|location=Sequence derived from alignment at sc0000708:161108..163388 (Clytia hemisphaerica)
CCCAGAAAAGTTACCATACGATGtgaaattacaaattacaaaACTAGAAC
TTTTTGTTACAGGTAGTAAAGTGGCAATACAAGAcgctaaaataaaacaa
tgTCAGCAAAAGGAACGGTCCTAGATTAAGTGGCCCCAAGATCATACACG
TCATGATCGTAAACGTTAACagcaaaatattgagaaaataaATCAACTGA
GAAAGGTGTACAGTCATCAGGCCAACACCTAGTCACCTACCTAGAGAAAG
GGTCTCCTTGCCCCTAGCTCCCCACCAGGGCCCCTCAAACCCCCAATCCC
AAAGAAAATGAGCTTTTAGAAGGTTCTGAATCAGACACTATTCCACTATT
CCCTATGATTTAACAGGCTCTGACGGTGGGTCAGACGGAACAGTACCTTA
CAATATGGAGATGAGTGATTTTATAAACAGGAAAGCGTAAAAGACAGTGA
TGAGATGAGATACACAACTAGAAGTAGGCGCGAGGTTCGTAAGCCAAAAC
AGTTTGAAACATGATGTGAACGTTTAAACTATTGATGGTATTATTCATTG
TATTAAGGGAGATGTTAGGATCTAGTCTATAATATAGCCAGTATCGTAAG
GTCGACCAAGGATGGCATCCATAGCTTCACgtataaggaagttgggcaaa
catctcataattttacgcgcgtttttcagtcttttagttccgcttaaatA
GTGTCCCGGTAGCATTCTTATGTTGACGTTCTCtcgttttatcatcatca
aaaagaattttcctgAGCTAATTGATCTGATTATCGATTTTGAAagctca
gtttgtctttttcttatccctaaTGAATCTAGGAAAATCTCTTTTttagg
aaattcccttttttatacTACAAGTAGTTATTAAACGCTCCACGTAGGTT
AAAACAATCACCTAACACAAAGTATTTGAGTAGTTATGCAACCATGGact
tattatagagactctggataaacatggtatgaaacggtggagagccaagt
attgtctttcttttgtttcagaaaacaatcgatgtactGAATTTGTCGGC
AAAGGATAAATGTCATGGCGGCTCGgaggactctgattttgaaaatgatt
aatactcttatttctaaaatgttctctaactttttctattcgtacttttg
ctggtaaaaagtttgaaaataaatgctagaataccaagcggaaacattta
tgaaatctggtgtgagaaaaaaatcataagacgagtaaaatcaaatcaaa
tgcttataatgacacgaaattttgaattgggaataacTTTCTGAGAAGAG
CTGAAATTGACATACATTAGGCGTGAGTCTgatagctccactgtggtatg
aaaatcttttggtggcacggtggattttttgaggttcaagtttaaaaaat
tctggtttcattattcatttcttataaatagcatatgtttttgcatcttt
cttgcattttaaaacgtcataacgacgcaTAACTAGCAATTAATTAGATG
AGTTTAAGTCTCGGAGGAGagcttaaagtctcatttgggaattggataag
tgtattttgatgagaagtGCAATGAAAACGctatgaaaaatcattttaat
ggttgaaggagggtgaacaataatgtcattactgcgaaCAAGGCTGGAAC
ATGAGATACCAGTAAAAATCAGTCAGTTGTTAATCCAGTGCCTATGTTAA
TTCCATGATGCTACTAAACAaccgtgtacattagtaaaatagcATATGAG
AGCAGTTTCCTTAGATACactgttttttataaaacaCCAATAACTTATGG
CTCTGGCTGGgctgttttgaattttatgagtttttcagttaattaaaatg
gaaatctTGTACTTCTCagcaatttctgaaatctgaggctcacaTTGTTT
TTGACTTGTTCTTAGGTtgtggccaaatttcagccttgtgtttttataga
attgttcttgtaaaaaggctttacttttgaaactataactgtaaatcact
cccttgacacatttgttagcatttgaagacTGGATTTTGTCTCAGATCAG
ATGAGAAGTCCAAAATCACTGTAGGGCTAATACCGATAGCCTGGGTAAAG
GGGTACGGTTCTATTTTGTATTCGGTGAAACACGGAACAGTGAGAACGTC
AGGGCTCTATTTCATTTTCGGTGCAACAAATTATTTCTTAAAAGGCAGAT
CTGggtttgatattttattttgagtgTTAAGCGTGGAAGAGTGTGGTTCT
aaggcgttttgggtgcgaggcGTATCAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028872-exon-sc0000708-1491911889:161108..163388 | TCONS_00028872-exon-sc0000708-1491911889:161108..163388 | Clytia hemisphaerica | exon |
| TCONS_00028872-exon-sc0000708-1510915933:161108..163388 | TCONS_00028872-exon-sc0000708-1510915933:161108..163388 | Clytia hemisphaerica | exon |
| TCONS_00028872-exon-sc0000708-1575043694:161108..163388 | TCONS_00028872-exon-sc0000708-1575043694:161108..163388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:161108..163388 . |
Blast
The following BLAST results are available for this feature:
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