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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028875 ID=TCONS_00028875|Name=TCONS_00028875|organism=Clytia hemisphaerica|type=transcript|length=655bp
TTTTGAAGAGAGAACAATCAGTGCGATTGCCTTTGCCAAAATGAAGTATT
TTATCGCTGTTTTATACCTTGCTTACATTGCAACTGCTTCGGCAGATAAg
TGCACCGATGTTTACAACTCATGTGTCAAAGCCACCGGTAGCGACCCCAT
GTCACGATTCAAATGTGGAATGAAATATTTGAGATGTCGATTCAATGACA
TGAGAAGTGATGAAGAAATTGCTGATGAACTTTTTGATGGAGAAGACAAG
CCTGAATGTAAAGTTGGGTTCGTCGATTGCATGAAAGCCGCCAGAAATGC
AGAAGACAAAATGGCAGCCTCAAAAGTGTGCTTCGAAAAGAAAGCTGCAT
GCATCAAGGACAAACTTCAACCAAAGATCGACTGCGTTAATAAATGCCGT
GAAGAGCTTAAATCTTGCAGAGCTGATGGATCAAGCAGAATGCAATGTGG
ATACAAATTCTACAAGTGTGTCAAGCCATGCAAAGACGCATAAATCCCTT
GCAAAACCTCTACAAAGATGAACAACTTTAGtttttttatcgaaatttta
agtttttaccTTTGTAGATTcgtttaacggaaaaatatttacttCAACAT
AAAAAACTTGAGTTTTATTTTTAGTGATCTGATATTGACTGAAGATAAAA
TAGAA Run BLAST on NCBI transcript from alignment at sc0000714:29956..33519+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028875 ID=TCONS_00028875|Name=TCONS_00028875|organism=Clytia hemisphaerica|type=transcript|length=3564bp|location=Sequence derived from alignment at sc0000714:29956..33519+ (Clytia hemisphaerica)
TTTTGAAGAGAGAACAATCAGTGCGATTGCCTTTGCCAAAATGAAGTATT
TTATCGCTGTTTTATACCTTGCTTACATTGCAACTGCTTCGGCAGATAAg
gtatgtatttttttcaatttgttgaTGTTTTCAAGTGAAAAACCTGCTAG
AAATATGAAAAGTATAGCTAGAAATTTGTAAACTGTAATCAGAATCCATT
CTTCTTTATGTATTGTCTTAACAGCGATGCCTGATTTGTTCGTCGTTGCT
CATATCTTTCAATATTCATAATTTATCCATAATATCTTTCCACTAGTGCA
CCGATGTTTACGACTCCTGTGTCAACGCCACCGGTAGCGACCCCATGTCA
CGATTCAAATGTGGAATGAAATATTTGAGATGTCGATTCAATGACATGAG
AAGTGATGAAGAGATTGCTGATGAACTTTTTGACGGAGAAGACAAACCTG
AAGTAGATTTTACCTCTTACTCTGTTGCTTTTAATAAAGTTTTAAGGTTT
CCAGGACAAAAAAGCCTTATAGAATTCGTCCTTAGTGAATAAATCTTTAT
TAGTACTTGCTACTGCTACTGttgaaaaaaggtaaaattaGGGCGGCGTC
AAATACAAGCAATTTAGACTGGAATGGTATAAATCTTTTATTTCGATTTG
TAAATTANAGGCATCAAGTACAAACAATTTAGACTGGAATGgtatgaatt
ttttattttgatttgtaaATGGTCTTTTCATTATAGTGTAAAGTTGGGTT
CGTCGATTGCATGAAAGCCGCTCAAAAAGCAGAAGACAAAATGGCAGCCA
GAAAAATGtgcatcaaaaataaatatgtttgCGCCAAAGAAAATGCCAAG
GAAAAATATGCCTGTCTTAAGAAGGTAATGAAGACAACCTACATTACCTA
AATACGTAAAATCAACATCTAGTAAGCCTAAAAATCTTTGCAAACGTTAT
GTGTTAACTTGAGATAAAGATATTGAGTTTTCCTAACTTAAATTTTACTA
TGCTTAAATGTAgattttaaaagtcaaatacCTCGTTGCAATTTTCTTTG
AGACAATGAACAGTTTTACAcgcctgtctcacagccccggtggaactttt
tcccacagtggggataaaaatttatatcgaataatcccaatggggataga
taTTCCATTGTTCCCGAGCTTAAAGCTaatttttctattgaatttcgaat
ggggatgaaatcaaagtcaattttccagtggagctGAAATTGTATGGTAT
TTATTCCTCCAGGAAccaaattttgggcaaatttttcagtggggctgggg
tcccagcgggtctgtgacacgggtgtattttaaattttttgatttatgat
cAGTGCAAAGATGTTGACGGAATGAAAGAAAAGATGAGATGCGCTGCTAA
ATGTttcaagaaagaagaagaagaagaagccgCTGATGAACTTTTTGATG
AAGGAGACAAAGTATGTTTTGAATATCTTACCAAACGAGTTTTATGTTTG
AAACTATCAGCGGCAGAAGAATACGACCGATAAAGTAGACTGACTTTAAT
ATTGTTAATACTTTTTCCAAATTGAGGTATCAGCTTTCTATCAAAGTTTG
TTTTTCAATACTCATAATTTATCCCTGATATCTTTCCGGTAGTGCACCGA
TGTTTACAACTCATGTGTCAAAGCCACCGGTAGCGACCCCATGTCACGAT
TCAAATGTGGAATGAAATATTTGAGATGTCGATTCAATGACATGAGAAGT
GATGAAGAAATTGCTGATGAACTTTTTGATGGAGAAGACAAGCCTGAAGT
AGGACTCATTTTCGTAATTTGTGCCCTTTAGTAAAGATTTAAGGTTTCCA
GGACAAAAAGACCTTATAGAAATCATCCCTAGTGAATAAATCTGCTTGCC
TATTAGTGCAACGCATTTTTACATTTGATTCATTTTGAAACACAGTCGAG
GATATAAATCTTTATTAGTACTTGCTACTGCTACTGttgaaaaaaggtaa
aattaGGGCGTCAAGTACATGCAATTTAGACTGGAATGGTATAACttttt
gccccgcaggggcttttgttcggatttgctcgccagaaaaatattcatgt
tcagattcatgttgtttcttccGATTCTGAGCGGCCCGCCGCGGTTAAAA
ATGTTCGCGCGCACCTAATATTATATCTCTTTTGTTGCTACTTGGTACTt
attataagaatcaaatcaataactcttgattgaaaaccatatacctttcg
gtaattagttcttacaaagtaaacaaaggatggcaaaaaaattgagcata
tttatttttattataagcattttctttataagaatcaaatcaatatctct
tgattgaaggcaatatgcctttcggtaattagttcttacaaagtaaacaa
agtatggcgaaaaaaattagcatatttatttttattataagcatctactt
tataagaatcaaatcaataacccttgattgaaggcaatatgccttcggta
attagttcttacaaagtaaacaaaggatggcgaaaaagatgagcatattt
atttttattataagcattttctttataagaatcaaatcaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNtttataagaatcaaatcaatttcagaatttt
tggcgttttcactgtgataacatgtgagcgataacttctctttttgagat
gtgagcgaccgtctatcccgtgtcatctcaaaagtaaatttgaaaccaag
ctttcttcctgcgacttaaattttatcgataaaacgaatttaaaatctac
acatgcgaTGCGTTATTTTGCTTAGGGATTTTCGAaaggaagctctgcgg
ggcattcttagcgacagctacttgctagtttatTTTGAGTTGTAAATGGT
CTTTTCATTATAGTGTAAAGTTGGGTTCGTCGATTGCATGAAAGCCGCCA
GAAATGCAGAAGACAAAATGGCAGCCTCAAAAGTGTGCTTCGAAAAGAAA
GCTGCATGCATCAAGGACAAACTTCAACCAAAGATCGACTGCGTTAATAA
AGTAAAtcaatattattttatttacatCCCAAAAAAATAAACCGCCGTCC
ATTCTTAGATTTGTGCAAAATTAAGTATTTCTTGATCCtgtaaaattatt
cttattctGTAGATCGAGATACAGTCTAAATCAATTGGTTCAATTTACAA
TTGgaaattttccttgtttttacaTATTGATACTCTACTCTCTTTTATTT
TAGTGCCGTGAAGAGCTTAAATCTTGCAGAGCTGATGGATCAAGCAGAAT
GCAATGTGGATACAAATTCTACAAGTGTGTCAAGCCATGCAAAGACGCAT
AAATCCCTTGCAAAACCTCTACAAAGATGAACAACTTTAGtttttttatc
gaaattttaagtttttaccTTTGTAGATTcgtttaacggaaaaatattta
cttCAACATAAAAAACTTGAGTTTTATTTTTAGTGATCTGATATTGACTG
AAGATAAAATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028875-exon-sc0000714-1491911889:29956..30055 | TCONS_00028875-exon-sc0000714-1491911889:29956..30055 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1510915933:29956..30055 | TCONS_00028875-exon-sc0000714-1510915933:29956..30055 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1575043694:29956..30055 | TCONS_00028875-exon-sc0000714-1575043694:29956..30055 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1491911889:31598..31753 | TCONS_00028875-exon-sc0000714-1491911889:31598..31753 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1510915933:31598..31753 | TCONS_00028875-exon-sc0000714-1510915933:31598..31753 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1575043694:31598..31753 | TCONS_00028875-exon-sc0000714-1575043694:31598..31753 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1491911889:32919..33056 | TCONS_00028875-exon-sc0000714-1491911889:32919..33056 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1510915933:32919..33056 | TCONS_00028875-exon-sc0000714-1510915933:32919..33056 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1575043694:32919..33056 | TCONS_00028875-exon-sc0000714-1575043694:32919..33056 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1491911889:33259..33519 | TCONS_00028875-exon-sc0000714-1491911889:33259..33519 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1510915933:33259..33519 | TCONS_00028875-exon-sc0000714-1510915933:33259..33519 | Clytia hemisphaerica | exon |
| TCONS_00028875-exon-sc0000714-1575043694:33259..33519 | TCONS_00028875-exon-sc0000714-1575043694:33259..33519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000714 | supercontig | sc0000714:29956..33519 + |
Blast
The following BLAST results are available for this feature:
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