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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028903 ID=TCONS_00028903|Name=TCONS_00028903|organism=Clytia hemisphaerica|type=transcript|length=2891bp
AGTTACCAAGCGTGCGTAGAAtatagaaaaaagtgtgaaataTTCTAAGA
TAGATACTAAACTTCATGCTTAGCACTTAAGATCGATAATATTAAGGAAC
CCTGTTTGTGTTGGATCCAGTGAAGATTAAAGGTCGATCGACGTAGGATC
TGTTCTCTAGAGCAACCTTATTGAAATGGACAATCAAATGACTGTACTGT
AGCTAGGAAGTGCTTTATAAATCAAGTGAAACAGACATAAATGACTATAG
TTAGGAAGTAGAATAGATTGAGGAACGGATAGATTGGCAAGTAATATGAA
GGACGGTTCGTTTAGACTTTGAAATATGTAGTAGAAGTATAAACATGACA
AAAGCTACTTTTTTGTTCTGGTTGATTCTGAAACAAGCCTTTCGCTTGGA
GCTTCCAAAGAACACACGCAAAGTGACGGTTCATGTCATGCGGCATATCG
TGCAAATTACGCGTGTGAGAGATACAATCTTCTCCAATTACAATGTTATG
GTTTTTGctttaaaagatctttttttgtgtttttgattcCTCAACAAAGC
TCTCTAAATGTTGATATAgcgtaaaaaaagtaaatagaaATTTGTGAGCT
TCGGATTTTGCTGTTCCATCATGGAAAAGGTTTGAATACATAGTGATATT
AGTTTGTTAAATATAagcgaaaatgaaaaaacacggTGGTGTCTAGAAGA
CTATATTAAACTTAAAGAAGATTTTCTTTGTTTGCCAACTAGGTGATAAA
TATTAgagaagatgaaaaattaagacaaaaagaaagaagaacagaaaaga
aaaaaacattcgaagCGACAACAAGAAGACCAAGGGATGATTTCAGTGTT
CAAGATTTTGTTGGATTGACTTTGGTTATTTGAATCACATCTCTGGAAAT
GGCAACTCTTTTAAAAACGATATCACATACAGGTCTCCTTTTGTCGTCAT
TCATCGGACTATGTTTTGGAAACTATAAAGTTAGTGGTTGGATTTTCAAG
ACTTGTGGAACAAACATATGGGATTTTGTCCCAGTGTTGTTATTATTTCT
AACCGTTACGTCCTTGACTGTCTacttgtttgttgtttgtttacTCAGGC
TGTATTATACACGAGTGCTACGTTCAATCCAGTCGCTCAACCTTGTCGAG
TTTTCGTTTATGATGTCAAAACTGCAGCAAATGGAATACAGGAGGGCGTT
AGCTTCAGATATAAGTAATATTAATACTGATAACTTGTGTTTGGTTTGTT
ATGAGTTCCAGCCCAGGACGTTCACCTTGCCATGCCAGCATCAAGTGATG
TGTGGAAGCTGCGCATGGCGCTATATTGCTACGTGTCTGCGTGATCACGC
GTCGTTCAGATGTATTCTTTGTCGAACAGAGGTCACTGAATTCAAGGGAG
ATATCACAGTCATGTTGAATAAACTAAACATTGGGCAGCTATCGAGTTTG
GTGTCCAACACAAATAAAACGACTTCGTATAAGACATCAAATGTTGTTAG
TCTTTCTACGACTTTCTTCAACCTCCCGTTGAGTGAGGGCCAAAATTGTC
AACAATAGATATCACGTGTACAGATGAAACGTAACAAAAGAAATTGCCAT
CGAAGTTTTATCCAGGGGAATTGCTTTATACACTTGGAACGCTATAAAGT
TTGAAGAGTTTTTTCTCACTTTATTGTGGGAGCTATCCTCAGGTTTTTCT
AGGAACCGTTTTGCCAGATGTCTGACGAACCTTCAAACCTAAAGGAGAAA
TGAGATGTTATATTCCATTCTACCCTCGAGTGCCTTTAACCCGCGTGTTA
CCCTAGCGTACAAACAGGGTATATTCCTTCAGGGGATTATAGATGCTATG
GCATCCTAATGAATATATTtcacacaaagaaaatgttttcgaCTTTTTTA
TAAATGGGGGATCGATAAGGTTCCACGGGGTCTTgaaaaatagaacaaaa
aacattaaaagaaGTAAGAAAGGTGACGATACTTGAGAGAGAATGGGCAC
TACAGTGGACGAACTGCCCTGTCTCATTTGAAACTTGGAATCTAGTTAAA
TTATACGCATTGTATCATGTGAGATTAATTGTTACGTAAATCTTTCAATT
CTTGGAGGAGATTTTGTAAATAATATTATAGGGACGTGTAATGTTTCATG
AAATTTTTAGCTTATTTTATATGTAGAATTTTTAGATAACTTTGTAAATA
TTATTCTAACTTATCAAAAGTAATATATATTTCACCCTTTcgctacccag
ctggcacacaacgttgtttcaacgtttatttaacgttcacaacgtccata
taacgttagatgaacgttgaacaACGTTATGTGCTAGCTGGGTATTGGGT
ATTGATATACAAGGGTGCCTTAAAAAGTTCACTCCAAAGTACCTCAAAAG
GTCAAAACTATCTCTTGTCCTTCTCTCCGCCCACGAAGAAAACCCTTGTA
TCCCCGCTTGTAAATTGCAGCAGTATCAACCCTAAACAACAAAGTTCGGC
AATTTCAATTCGATTCAATTATTGCATAAGGcaatataaatttaaaaaca
cAGTTTACAGAAATATTGTATTCACCCCGAACGGATGATTAAAAGCTACG
GGAAAGATAAAAAACTGTCCAAATTTTCTCCGTGTATTTACCAATAATAT
ACTTGACCAAGTTTGTTCCAGTGTACAGCTTGTCAAATATCAGCAATGAT
TTTCAGAAAAGGTTGTTTGGGTAAGCTGCTCAAGtaaaatattataataa
tattaaaattttaaaagaagttaTATTTTGTAAATAGATGAATTCCTTGA
GGATTTTAATATTATGAGAACTTTTAAATTATTGTTTGTAGACATTCTTT
TTTCTGTTGTACCCATGTGTCGCACCTGTGTCCCCCCCGGT Run BLAST on NCBI protein sequence of TCONS_00028903-protein >TCONS_00028903-protein ID=TCONS_00028903-protein|Name=TCONS_00028903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MATLLKTISHTGLLLSSFIGLCFGNYKVSGWIFKTCGTNIWDFVPVLLLF
LTVTSLTVYLFVVCLLRLYYTRVLRSIQSLNLVEFSFMMSKLQQMEYRRA
LASDISNINTDNLCLVCYEFQPRTFTLPCQHQVMCGSCAWRYIATCLRDH
ASFRCILCRTEVTEFKGDITVMLNKLNIGQLSSLVSNTNKTTSYKTSNVV
SLSTTFFNLPLSEGQNCQQ Run BLAST on NCBI transcript from alignment at sc0000714:51510..54400 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028903 ID=TCONS_00028903|Name=TCONS_00028903|organism=Clytia hemisphaerica|type=transcript|length=2891bp|location=Sequence derived from alignment at sc0000714:51510..54400 (Clytia hemisphaerica)
ACCGGGGGGGACACAGGTGCGACACATGGGTACAACAGAAAAAAGAATGT
CTACAAACAATAATTTAAAAGTTCTCATAATATTAAAATCCTCAAGGAAT
TCATCTATTTACAAAATAtaacttcttttaaaattttaatattattataa
tattttaCTTGAGCAGCTTACCCAAACAACCTTTTCTGAAAATCATTGCT
GATATTTGACAAGCTGTACACTGGAACAAACTTGGTCAAGTATATTATTG
GTAAATACACGGAGAAAATTTGGACAGTTTTTTATCTTTCCCGTAGCTTT
TAATCATCCGTTCGGGGTGAATACAATATTTCTGTAAACTgtgtttttaa
atttatattgCCTTATGCAATAATTGAATCGAATTGAAATTGCCGAACTT
TGTTGTTTAGGGTTGATACTGCTGCAATTTACAAGCGGGGATACAAGGGT
TTTCTTCGTGGGCGGAGAGAAGGACAAGAGATAGTTTTGACCTTTTGAGG
TACTTTGGAGTGAACTTTTTAAGGCACCCTTGTATATCAATACCCAATAC
CCAGCTAGCACATAACGTtgttcaacgttcatctaacgttatatggacgt
tgtgaacgttaaataaacgttgaaacaacgttgtgtgccagctgggtagc
gAAAGGGTGAAATATATATTACTTTTGATAAGTTAGAATAATATTTACAA
AGTTATCTAAAAATTCTACATATAAAATAAGCTAAAAATTTCATGAAACA
TTACACGTCCCTATAATATTATTTACAAAATCTCCTCCAAGAATTGAAAG
ATTTACGTAACAATTAATCTCACATGATACAATGCGTATAATTTAACTAG
ATTCCAAGTTTCAAATGAGACAGGGCAGTTCGTCCACTGTAGTGCCCATT
CTCTCTCAAGTATCGTCACCTTTCTTACttcttttaatgttttttgttct
atttttcAAGACCCCGTGGAACCTTATCGATCCCCCATTTATAAAAAAGt
cgaaaacattttctttgtgtgaAATATATTCATTAGGATGCCATAGCATC
TATAATCCCCTGAAGGAATATACCCTGTTTGTACGCTAGGGTAACACGCG
GGTTAAAGGCACTCGAGGGTAGAATGGAATATAACATCTCATTTCTCCTT
TAGGTTTGAAGGTTCGTCAGACATCTGGCAAAACGGTTCCTAGAAAAACC
TGAGGATAGCTCCCACAATAAAGTGAGAAAAAACTCTTCAAACTTTATAG
CGTTCCAAGTGTATAAAGCAATTCCCCTGGATAAAACTTCGATGGCAATT
TCTTTTGTTACGTTTCATCTGTACACGTGATATCTATTGTTGACAATTTT
GGCCCTCACTCAACGGGAGGTTGAAGAAAGTCGTAGAAAGACTAACAACA
TTTGATGTCTTATACGAAGTCGTTTTATTTGTGTTGGACACCAAACTCGA
TAGCTGCCCAATGTTTAGTTTATTCAACATGACTGTGATATCTCCCTTGA
ATTCAGTGACCTCTGTTCGACAAAGAATACATCTGAACGACGCGTGATCA
CGCAGACACGTAGCAATATAGCGCCATGCGCAGCTTCCACACATCACTTG
ATGCTGGCATGGCAAGGTGAACGTCCTGGGCTGGAACTCATAACAAACCA
AACACAAGTTATCAGTATTAATATTACTTATATCTGAAGCTAACGCCCTC
CTGTATTCCATTTGCTGCAGTTTTGACATCATAAACGAAAACTCGACAAG
GTTGAGCGACTGGATTGAACGTAGCACTCGTGTATAATACAGCCTGAgta
aacaaacaacaaacaagtAGACAGTCAAGGACGTAACGGTTAGAAATAAT
AACAACACTGGGACAAAATCCCATATGTTTGTTCCACAAGTCTTGAAAAT
CCAACCACTAACTTTATAGTTTCCAAAACATAGTCCGATGAATGACGACA
AAAGGAGACCTGTATGTGATATCGTTTTTAAAAGAGTTGCCATTTCCAGA
GATGTGATTCAAATAACCAAAGTCAATCCAACAAAATCTTGAACACTGAA
ATCATCCCTTGGTCTTCTTGTTGTCGcttcgaatgtttttttcttttctg
ttcttctttctttttgtcttaatttttcatcttctcTAATATTTATCACC
TAGTTGGCAAACAAAGAAAATCTTCTTTAAGTTTAATATAGTCTTCTAGA
CACCAccgtgttttttcattttcgctTATATTTAACAAACTAATATCACT
ATGTATTCAAACCTTTTCCATGATGGAACAGCAAAATCCGAAGCTCACAA
ATttctatttactttttttacgcTATATCAACATTTAGAGAGCTTTGTTG
AGgaatcaaaaacacaaaaaaagatcttttaaagCAAAAACCATAACATT
GTAATTGGAGAAGATTGTATCTCTCACACGCGTAATTTGCACGATATGCC
GCATGACATGAACCGTCACTTTGCGTGTGTTCTTTGGAAGCTCCAAGCGA
AAGGCTTGTTTCAGAATCAACCAGAACAAAAAAGTAGCTTTTGTCATGTT
TATACTTCTACTACATATTTCAAAGTCTAAACGAACCGTCCTTCATATTA
CTTGCCAATCTATCCGTTCCTCAATCTATTCTACTTCCTAACTATAGTCA
TTTATGTCTGTTTCACTTGATTTATAAAGCACTTCCTAGCTACAGTACAG
TCATTTGATTGTCCATTTCAATAAGGTTGCTCTAGAGAACAGATCCTACG
TCGATCGACCTTTAATCTTCACTGGATCCAACACAAACAGGGTTCCTTAA
TATTATCGATCTTAAGTGCTAAGCATGAAGTTTAGTATCTATCTTAGAAt
atttcacacttttttctataTTCTACGCACGCTTGGTAACT Coding sequence (CDS) from alignment at sc0000714:51510..54400 >TCONS_00028903 ID=TCONS_00028903|Name=TCONS_00028903|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000714:51510..54400 (Clytia hemisphaerica)
CTATTGTTGACAATTTTGGCCCTCACTCAACGGGAGGTTGAAGAAAGTCG
TAGAAAGACTAACAACATTTGATGTCTTATACGAAGTCGTTTTATTTGTG
TTGGACACCAAACTCGATAGCTGCCCAATGTTTAGTTTATTCAACATGAC
TGTGATATCTCCCTTGAATTCAGTGACCTCTGTTCGACAAAGAATACATC
TGAACGACGCGTGATCACGCAGACACGTAGCAATATAGCGCCATGCGCAG
CTTCCACACATCACTTGATGCTGGCATGGCAAGGTGAACGTCCTGGGCTG
GAACTCATAACAAACCAAACACAAGTTATCAGTATTAATATTACTTATAT
CTGAAGCTAACGCCCTCCTGTATTCCATTTGCTGCAGTTTTGACATCATA
AACGAAAACTCGACAAGGTTGAGCGACTGGATTGAACGTAGCACTCGTGT
ATAATACAGCCTGAgtaaacaaacaacaaacaagtAGACAGTCAAGGACG
TAACGGTTAGAAATAATAACAACACTGGGACAAAATCCCATATGTTTGTT
CCACAAGTCTTGAAAATCCAACCACTAACTTTATAGTTTCCAAAACATAG
TCCGATGAATGACGACAAAAGGAGACCTGTATGTGATATCGTTTTTAAAA
GAGTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028903-exon-sc0000714-1491911889:51510..54400 | TCONS_00028903-exon-sc0000714-1491911889:51510..54400 | Clytia hemisphaerica | exon |
| TCONS_00028903-exon-sc0000714-1510915933:51510..54400 | TCONS_00028903-exon-sc0000714-1510915933:51510..54400 | Clytia hemisphaerica | exon |
| TCONS_00028903-exon-sc0000714-1575043694:51510..54400 | TCONS_00028903-exon-sc0000714-1575043694:51510..54400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000714 | supercontig | sc0000714:51510..54400 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001841 | Znf_RING |
Blast
The following BLAST results are available for this feature:
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