TCONS_00028914 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028914
Unique Name	TCONS_00028914
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	991

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000715:2306..6725-

transcript sequence

>TCONS_00028914 ID=TCONS_00028914|Name=TCONS_00028914|organism=Clytia hemisphaerica|type=transcript|length=991bp
CTtctttcaaacctttccaagcaaagattttaacaaccaactttgtgccc
tctttctgcctactctaacaattagaataggcagggcagaaagtcggctt
TCTGGGTTTAGAAACACTAACTGGCAGCACTCTATGTAGATATTTTGCTT
GCTGTCACTCAACCTGATATGTATGGAATGTTATACAAAGTGATGACATT
CACCGGAAGCATTTGTCAAGCACCTTTTAATCCATTCTCTTCATTTTTGA
CCCACAGATACAACACGAAATCCAAGACCTGGAGAAGTGGATGGGAAAGA
CTACCACTACTCAAACAAAGAAGAAATGTTGAAAGCGATCGAAAATGGAG
AATTTTTGGAAAGTGCAGAATTCTCTGGCAATGTGTATGGAACAAGTAAG
AAAGCAGTTCAAGACGTTTTAGATTCCGGAAAAATTTGCATCATGGACAT
CGATTCACAGGGAGTTAAGAACGTCAAGAAAGTGAATTTCGATTGTGTTT
TGGTTTTTATCCAACCTCCTTCCATCGAAGAATTGGAGAGACGTTTGAGA
GGTCGAGGAACAGAAAGTGAAGAAGCCATACAAAAACGACTGAATACCAG
CAAGAAAGAATTTGAATACGCTGAACTTCCCGATTCGTACCACCACAAGG
TCATCAACGACGATTTAGAAAAAGCATATATCGATCTAAGGGATATCATA
TCAAAGGACATTCGGAAGTTAGAATGAAGATGACTTTTACTGTAGGTTAG
TTTTATTTAACATCAAATCTGGTATATTTTTTATTAGGATGGAGGTACTG
TAGATAAACAGTGATCgatcttttttcacttttttgtattttttagttCT
TTGCTTCTAAAGTAAGTGCACCCCactttgatttaaaatttttattatgg
TTGTCAATAGCATTTAGTATTTATATTTTGGTCCCATCAATTAGTTTTAT
TATTATGATATAGATAGTtcagtaaaaagaaaatattatct

Run BLAST on NCBI

transcript from alignment at sc0000715:2306..6725-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028914 ID=TCONS_00028914|Name=TCONS_00028914|organism=Clytia hemisphaerica|type=transcript|length=4420bp|location=Sequence derived from alignment at sc0000715:2306..6725- (Clytia hemisphaerica)
CTTCTTTCAAACCTTTCCAAGCAAAGATTTTAACAACCAACTTTGTGCCC
TCTTTCTGCCTACTCTAACAATTAGAATAGGCAGGGCAGAAAGTCGGCTT
TCTGGGTTTAGAAACACTAACTGGCAGCACTCTATGTAGATATTTTGCTT
GCTGTCACTCAACCTGATATGTATGGAATGTTATACAAAGTGATGACATT
CACCGGAAGCATTTGTCAAGCACCTTTTAATCCATTCTCTTCATTTTTGA
CCCACAGATACAACACGAAATCCAAGACCTGGAGAAGTGGATGGGAAAGG
TAAGATATTGCTTTGTTTACACGTGTACACCATTATTGACACTTCCATGG
AATTGAATGTGTAAATTCTTTTAATCGTGGCGATAATCTTATTTATAGAT
ATTTGTGTTGTAAATTACTTGAACATACACAGTAATCGAAAAATACACTC
TACAACAGTCTAAAACGGGTGAACTGTAAACTGAGATATGATGTTTGCAT
TATTAAATAATGAAAAAAAAGTAATGACCATATTGTAACCTTTTCACGTT
CACGTTTTTTTTTATAAAATCAAACTATACCGGGTGCGCCACAAAAAAGT
TTCTCTCTTTGAAACTGAACTTCTCGAAATCCAAAAATTTTAAAAGGATC
ATTCCTATTTCATTGGAAAGAAGAAAGATAAATTTAAATTTTGATGGGTT
ATTTAATAAATTCGGTTCATTAGATCAAAAGTTATGCTAAATTGAATAAA
AAATTTACTTTCAGAAAGTGCCCGAAAACGTTAAAAATCGACCTATCAAA
ATTTTATTTTAAAACTAGCAATCGCAATAGGCTTTACATGATTAAGAACA
TTTTTCAGTAATTAAATACATAAATTTTGAAACTGATGGGTCAAAAGGGT
TTAGAATCTTCATCAAAATCAATTTAATTTACTTTTACCGAGATTTTCTT
AAGATTTTTGGTTGTAGACAGGATAAAGTCTATGTAAGGCTGGATGTACC
TCGAAACCCATATTTGATGTATTTTTCTGAGTTTTACAAGATTTTTTGGC
TTTTTTCGACAAACTTTCTTCCTTTTAATGTAATTCATCAACCTTCCTTT
ATATAACATAAGGTCATTTAGACAGCTAATTATCCTTTTTGATGACTAAA
ACGAAAATACTGATGCTTCATGTAATTATGCTTCTGTTTAATTTGATAGG
TCGATTTTTAACGTTTCTGAGCACATTCAGAAAGTAACTTTTTTATTCAA
TTGAGCATAACTTTCGATCTAATGAACCAAATTCAATAAATGACCCATCA
AAATTTAAGTTTATTTTTCTTCTTTCCAATGGAAAGGAATGGTCCTTTAA
AATTTTTTAAAACTTCCAGAAAATTAGTTTTAAAGAGAGAAACTTTTTTG
TGGCGCACCCGGTATAAGAACATAAGGCTTCCATGGCCAAAATGAACAAG
TTAAGAACATTTTAAGGATTTGCGTACTTAAAAAACCCTATTTCTTAGAA
GATTGGTCAAAAATGCTCACAAAAAAAAATGGTGTAAAAAGAACATGTTT
AAGAACATTTTTAGGCTTAAACTCAAAAGTCAAGAACATCTGAAGGCTTA
AAAAATATAGGATGTTCTTGTAAAAAAACGTGTCTTTCAATCTTGTTTAT
AGACTACCACTACTCAAACAAAGAAGAAATGTTGAAAGCGATCGAAAATG
GAGAATTTTTGGAAAGTGCAGAATTCTCTGGCAATGTGTATGGAACAAGG
TATAAAATAATTATTTCTCATTTTGATGGCTCTTCATCTGACATCTCTAT
GTCGCGAAAATGATTAAACGTATTTCTATAAGTAAAATGCTTGTTTGTAT
TTTTCTTCCTCAATAACCCTTAGACTACGAGAAATGCGCCCAAAATAGAA
ACTCCTTAAACCCTATTTAGCTCGGTCAAACTATTAAGTTCAAGACTTTT
TGCCCTATCGATGATGTAAGTTAAAGGTACGAGTAAACCTGTTAAATGGG
TTAAGAACAAGCATAAAAGTAGCTTTTCAAGGGTGCCAAAATGAGTACCC
TCAGATACCTCAGAATAACCCTCAGATATAATTATGTCGTTGATTCGGTT
TTCAGTAAGAAAGCAGTTCAAGACGTTTTAGATTCCGGAAAAATTTGCAT
CATGGACATCGATTCACAGGGAGTTAAGAACGTCAAGAAAGTGAATTTCG
ATTGTGTTTTGGTTTTTATCCAACCTCCTTCCATCGAAGAATTGGTAAGT
GTTGGCTGTTAGAATCTCATCTTCTGCATCTACTTCAAACTGTGGGCTAA
CATAGCGTCAGCCCCCCTGTTGCTAGTAGGGGGGTTACACCCTCCAAAAA
GCCAAAAAGGGTGGGAGCTAAAGATGTTTCAAATATTTGGGGGACCTAAT
GTACCTGGGGAGAGCTGAAATCTCGTCATTCAACATGGGGACTTCATCTT
AATGGTTGGCTTCAATTACTCAAATTACTCGTGAAGCTGGAAAATTTGTT
TTTATATTAAATGAACAAAAGGTTTTATCTTAACCTTCGAACTGCAACAC
AATTTACATTGAAAACACTATTTTTTGGGTGGAACAAATTTTTAAAAGGT
TGAGGGTCGAAAGCCATGGGGGCTACCAAAAATGTCATGAATATTTTGGG
GGACTTAAACCCAGGGGGGCCTAATTTTCGTCTGGGACCTAAACCCAGGC
TGACGCTATGGGCTAAATATCATAACGTTAGTTGTAGCAGTATGGTCAAT
AGCAGTTAAATCTCACCCCTAGCATTTGGTATATTTTTGTGTATTCCCCA
CATAACTAGACTGTACTATATTGAAACGCAATTTTTAACCAATCTTCACC
AGGATACATTGTATCACGTGCTTCAGTGAAAATAATAGAATCACAAAATA
GAAAATTTGTGAAATGAAATATCGAAAAAAATCACAATTATAACAATTGC
TAATAAAAAATTGTAAGTTAGTACTTTATCATTCGATAGTCCCTGATTCC
AATTTTTCATTCGATCGATGTCCACAATGTACTTTCGTTGACAGGAGAGA
CGTTTGAGAGGTCGAGGAACAGAAAGTGAAGAAGCCATACAAAAACGACT
GAATACCAGCAAGAAAGAATTTGAATACGGTAGGTCCTCCACAATCAAAG
TAAGCATAGATTGAGAAGATAGCAATGTAAAGTCTTGACATTAGATTTGT
TGAAGGTTTCAACTGCCGGTAGAGGACTTAATTATCTGTTTAGTGATAAT
TGAATGTGTTAAATTCTTTTTGGGTAGCTCCTGCTGGAGAGTTACATACT
CCAAAATGACCCATGTCATCCAAAGATATTTTTGAATGGTCTTTAAGCTC
GGGGACCAAGAAAATGTTGCTACAATTTTTAACAATTGCAAAGTTTTCAA
GGTAATTTTGAAAGTCGATTTAATTATACTCACTCATAATTTTGCCGGTC
GATTCCACTTTCTCTTAAAATATTTCTTGGTACAACAATTAGTGTAGCAA
CTAGCATGTCTATCATCACCCTTTTTCAGCTGAACTTCCCGATTCGTACC
ACCACAAGGTCATCAACGACGATTTAGAAAAAGCATATATCGATCTAAGG
GATATCATATCAAAGGTATTTCCATATTTATTCTAATGGCTTACATATCA
ATCTTAAGGTTTGGTAAGTTCCATTTGTGGGGTTGGTCTCCTTGTCGTTT
GTAGTATGAAACGTGGCCAATCTCAACGTCAAAGATGGGGCATCCGTCGA
ACTATTAGTTTTATGAACGGCGTTTTGTATTCCAATTAACGACGATAAAT
AACTGTAGCTCTCCATTCACACTACGTTAAAAAAATTAGACCGAAATACC
TCGAGCCAAAATATCGACTCTTCTTCTAAAAAGATTTTTTCTTTATTAGA
AATTATTTTCCTGGTAGTAGGGGGCCAAGCCTGGGGTTCCGTGACATCTT
TTATACGACCTAGCCATTTTTAGTCTATTCAAAAGAACAGTATATCACAA
GATATTTTTGAGAGGGAGGACGCGGATTAGGCTTGGGAAAACTTTTTATG
GCCAAAATAGTGACGCCATAGGCAAAACTGCAAGGGAAATAAGGGGTATA
GAAATATGACTAATCTTTTCCTTTATGTTTTTCAGGACATTCGGAAGTTA
GAATGAAGATGACTTTTACTGTAGGTTAGTTTTATTTAACATCAAATCTG
GTATATTTTTTATTAGGATGGAGGTACTGTAGATAAACAGTGATCGATCT
TTTTTCACTTTTTTGTATTTTTTAGTTCTTTGCTTCTAAAGTAAGTGCAC
CCCACTTTGATTTAAAATTTTTATTATGGTTGTCAATAGCATTTAGTATT
TATATTTTGGTCCCATCAATTAGTTTTATTATTATGATATAGATAGTTCA
GTAAAAAGAAAATATTATCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016420	XLOC_016420	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000715	supercontig	sc0000715:2306..6725 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.5708	26.5133	13.1899	11.7819	40.6681	31.2445	59.7804	62.4138	39.5076	32.4267	31.5542	26.5442	31.6235	27.6981	40.5937	33.131	55.4703	54.6782	30.3493	32.6279	44.3198	46.542	76.6125	73.9733	95.9512	90.4897	97.5341	76.0291	69.1973	69.259

Blast

[Close]

BLAST of TCONS_00028914 vs. Swiss-Prot (Human)
Match: KGUA (Guanylate kinase OS=Homo sapiens GN=GUK1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.023e-37
Identity = 72/157 (45.86%), Postives = 113/157 (71.97%), Query Frame = 2

Query:  254 TDTTRNPRPGEVDGKDYHYSNKEEMLKAIENGEFLESAEFSGNVYGTSKKAVQDVLDSGKICIMDIDSQGVKNVKKVNFDCVLVFIQPPSIXXXXXXXXXXXXXXXXAIQKRLNTSKKEFEYAELPDSYHHKVINDDLEKAYIDLRDIISKDIRKLE 724
            + TTRNPRPGE +GKDY++  +E M + I  G+F+E AEFSGN+YGTSK AVQ V    +IC++D+D QGV+N+K  +   + + +QPPS+  LE+RLR R TE+EE++ KRL  ++ + E ++ P  +   +IND L++AY +L++ +S++I+K +
Sbjct:   37 SHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEPGLFDVVIINDSLDQAYAELKEALSEEIKKAQ 193

The following BLAST results are available for this feature:

BLAST of TCONS_00028914 vs. Swiss-Prot (Human)

BLAST of TCONS_00028914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KGUA	1.023e-37	45.86	Guanylate kinase OS=Homo sapiens GN=GUK1 PE=1 SV=2	[more]

You are here

TCONS_00028914 (transcript) - C. hemisphaerica