|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028935 ID=TCONS_00028935|Name=TCONS_00028935|organism=Clytia hemisphaerica|type=transcript|length=1304bp
TAAGGCTTGAAATCTATATTTTATATCacaaataaatatttataataaAT
ACAGGTACTTTGTATACAATGTTTAAAGAACACAAAAATTATTAACATca
cataaaaatatataattctcttttttaataaaatgatCATTTTGTTAGAT
ATGGAATGGTACGACGAATGGCTCTGCATTTTGACGGCCAGCAGAATCCG
TAAAATCTCTGACCACTTCTAATTCTCTTTGAAATTTGTGCAATGTTCAT
TCAAAACAGAGAATTCACCTCGAGCGATGTCAACATTTTCTTTCTGCCAA
GACTTTAGTACTCTTAAGAAAGATTATCTGCGTTAATTTCATGTTTTCGT
CAAATTCTTTGAACatcagaaatattttgaatCTTTACTGCTTGAATACA
GTCCACATACAATCTTAAGTTCCATGGGAGGATCAAGTCGATAGTAAAAT
TGATAAATTGTGACTTGGACAACCCAATTGAAGGAAATTGTGAAAAAAGA
CATGTGATTCAATATCATGATTTCGTGATTGCTTTTTCCACAAACAGTGT
TTCACTGTCTCGTTCAATACATCAACTTTCATTTCATTCTCTTTTTTAAG
TTGTTCATTTCCAGAAATGTCCTTTAATGTTTGGACATTTATTGCAGGAG
CATTCCTTCACAATCTCAATAGCACGAGGTACTCGAACCATTTTTTCAAC
ACCATCCACCATCTTTTTACATTTTAAGAAGATAACTTTCTTGAAATGTT
CATTAGGGACGCATATGCGACAAGTGTTTTGACTGTTCCCACTGTCGAAC
ATGATCGAATGACAAAGTCCCCGGCAATAATTGTTTCGAACATACATCTT
TTCACATCCTTTCTCATGAACGGGCATGTTAAAAGGAATGGTTTTACAAT
TATCTTGGAATGGCTTGTCCTCATTTAACGGTGCACTTATGACCAACATG
ATACAACtgagaaggagaagaaaaatttcccctgattttgatctgttttc
catctttgtttaaaatttatttgtttcttttcttGCTAGAAAAGAAGATA
GAAAATATGAAATGGTAGAATATTCAACAATTTCTAGAAGTATTTTTGCC
AGCTTTAATGCGTCCTCCAGAAATCAGTATCATTCTtaataaatgtaatt
tttttcttgttgtcTCCAAAtagaattttaatttcaaatagaCACACTct
acttttacttttacttcCTCGGTAGTCTGCTTATGTTTAAGATTAACTTT
TAGGTGTGTCCGCATTTACTGGGCCGAAGACATAACAACACTCTCCTACT
CTAG Run BLAST on NCBI protein sequence of Cerberus family protein >TCONS_00028935-protein ID=TCONS_00028935-protein|Name=Cerberus family protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MENRSKSGEIFLLLLSCIMLVISAPLNEDKPFQDNCKTIPFNMPVHEKGC
EKMYVRNNYCRGLCHSIMFDSGNSQNTCRICVPNEHFKKVIFLKCKKMVD
GVEKMVRVPRAIEIVKECSCNKCPNIKGHFWK Run BLAST on NCBI transcript from alignment at sc0000715:63329..64632 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028935 ID=TCONS_00028935|Name=TCONS_00028935|organism=Clytia hemisphaerica|type=transcript|length=1304bp|location=Sequence derived from alignment at sc0000715:63329..64632 (Clytia hemisphaerica)
CTAGAGTAGGAGAGTGTTGTTATGTCTTCGGCCCAGTAAATGCGGACACA
CCTAAAAGTTAATCTTAAACATAAGCAGACTACCGAGgaagtaaaagtaa
aagtagAGTGTGtctatttgaaattaaaattctaTTTGGAgacaacaaga
aaaaaattacatttattaAGAATGATACTGATTTCTGGAGGACGCATTAA
AGCTGGCAAAAATACTTCTAGAAATTGTTGAATATTCTACCATTTCATAT
TTTCTATCTTCTTTTCTAGCaagaaaagaaacaaataaattttaaacaaa
gatggaaaacagatcaaaatcaggggaaatttttcttctccttctcaGTT
GTATCATGTTGGTCATAAGTGCACCGTTAAATGAGGACAAGCCATTCCAA
GATAATTGTAAAACCATTCCTTTTAACATGCCCGTTCATGAGAAAGGATG
TGAAAAGATGTATGTTCGAAACAATTATTGCCGGGGACTTTGTCATTCGA
TCATGTTCGACAGTGGGAACAGTCAAAACACTTGTCGCATATGCGTCCCT
AATGAACATTTCAAGAAAGTTATCTTCTTAAAATGTAAAAAGATGGTGGA
TGGTGTTGAAAAAATGGTTCGAGTACCTCGTGCTATTGAGATTGTGAAGG
AATGCTCCTGCAATAAATGTCCAAACATTAAAGGACATTTCTGGAAATGA
ACAACTTAAAAAAGAGAATGAAATGAAAGTTGATGTATTGAACGAGACAG
TGAAACACTGTTTGTGGAAAAAGCAATCACGAAATCATGATATTGAATCA
CATGTCTTTTTTCACAATTTCCTTCAATTGGGTTGTCCAAGTCACAATTT
ATCAATTTTACTATCGACTTGATCCTCCCATGGAACTTAAGATTGTATGT
GGACTGTATTCAAGCAGTAAAGattcaaaatatttctgatGTTCAAAGAA
TTTGACGAAAACATGAAATTAACGCAGATAATCTTTCTTAAGAGTACTAA
AGTCTTGGCAGAAAGAAAATGTTGACATCGCTCGAGGTGAATTCTCTGTT
TTGAATGAACATTGCACAAATTTCAAAGAGAATTAGAAGTGGTCAGAGAT
TTTACGGATTCTGCTGGCCGTCAAAATGCAGAGCCATTCGTCGTACCATT
CCATATCTAACAAAATGatcattttattaaaaaagagaattatatatttt
tatgtgATGTTAATAATTTTTGTGTTCTTTAAACATTGTATACAAAGTAC
CTGTATttattataaatatttatttgtGATATAAAATATAGATTTCAAGC
CTTA Coding sequence (CDS) from alignment at sc0000715:63329..64632 >TCONS_00028935 ID=TCONS_00028935|Name=TCONS_00028935|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000715:63329..64632 (Clytia hemisphaerica)
atggaaaacagatcaaaatcaggggaaatttttcttctccttctcaGTTG
TATCATGTTGGTCATAAGTGCACCGTTAAATGAGGACAAGCCATTCCAAG
ATAATTGTAAAACCATTCCTTTTAACATGCCCGTTCATGAGAAAGGATGT
GAAAAGATGTATGTTCGAAACAATTATTGCCGGGGACTTTGTCATTCGAT
CATGTTCGACAGTGGGAACAGTCAAAACACTTGTCGCATATGCGTCCCTA
ATGAACATTTCAAGAAAGTTATCTTCTTAAAATGTAAAAAGATGGTGGAT
GGTGTTGAAAAAATGGTTCGAGTACCTCGTGCTATTGAGATTGTGAAGGA
ATGCTCCTGCAATAAATGTCCAAACATTAAAGGACATTTCTGGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028935-exon-sc0000715-1491911889:63329..64632 | TCONS_00028935-exon-sc0000715-1491911889:63329..64632 | Clytia hemisphaerica | exon |
| TCONS_00028935-exon-sc0000715-1510915933:63329..64632 | TCONS_00028935-exon-sc0000715-1510915933:63329..64632 | Clytia hemisphaerica | exon |
| TCONS_00028935-exon-sc0000715-1575043694:63329..64632 | TCONS_00028935-exon-sc0000715-1575043694:63329..64632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000715 | supercontig | sc0000715:63329..64632 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
