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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028938 ID=TCONS_00028938|Name=TCONS_00028938|organism=Clytia hemisphaerica|type=transcript|length=1579bp
AATGGGGTCTTTTTGGTCTAGGCTTGGTTGACGTTAATGATGGTCGTTTT
TCAAGTATCAACAACGATTTTCTTGCTACTGAGCATTTCTCACATCGTTC
ACTTGTAGCAGGTCCAAAAATCAGCCCAGGACAATCCTTGTGACGTATGG
TTGGCTGGAGCTTTTCAAATGGTGTAAAATCTTTACACTCTAGCCGAGTG
TTATCACGTTGGTCACTGTGACCTTCTTTACGTTTCTCTATAACCTTTGG
AAAATCATAATTTCCTTCACAGATCCGAAATTCTccaacagtttgaaaaa
agatttccacAGTGTTAACGGTGAGAGCTTTTGGTACATCAATATTTAAA
GAGGCTATATCAATGTTTTGTTCAAAAATGGACATGGTCCATGAAAATTC
ACCCATCTTGTTTTTCTGCTGCTCAATAAATATAGTCAAGTCAACAAATG
CAGGTGAAATAACTGCTTCATCTTTACCACCACGACGATCACATATACGT
ACAAATGTatgttgttttaatttttctgcataagaaaagttgaatttttt
cccAACTTCTATTATCTTTGCAAGAGTCAAAAATTCAATTGTGATTAATT
TGAATTCACATGGCTCCATACTAAAACTGCAAACTTTGCAATCTGTGTCc
gaatgattttcaaaaataactatACTTTGCAGATGGTGGTGGATTGGATT
TTCGATGTTGATTTTCCTCATTTTACGTACACATTTACTGCAAAGATTTG
GTGGATGCAATTCTCTCATATCCATTCCAATAtcataattaaaaaaagat
tgtATTTCTCCTTTGAATTTGTGTGCAGGTAAAACATTCTTGTAGCCATA
TCCTGTCTTTACTTTACCACAACAAAGTCTACATGTCTCTTCAaggtttt
ttatatgtttttccATGTTTTTAAATCAACCCAAAACCAAATAATTCAAC
AAATAATTCATTAAACGACCATATACAAGCACAAGTGCGTTAGATTTGAC
TCGTGATGGTTTGATTGCAGCTTTATCATTACGCAACTGAATTTTCAAAC
CACGTGACTCTTTCAGGATTCTCCACGGCATTGGAGCAAACCACGtgata
ataaaaattttaaaagatgcGACGTTGATGAAAGCAGAATCTCCTACATC
TTTTCAAGATGGCGCTAGTAGAATTTTAATATTGCAAGGTGCAGTCAGAA
AACTGCCAAGCCGCGTTGAGCCGCGACTCATACATtgctattttttacaa
aaattgaaagaagaatAGTTCAGTTTTATATATTTGGAAGGGCATTGCAA
ATGGGTGCATATTCATCGAGATATTTGTTTGGGAAACAGCTCAGAGGTTC
TGATGAAAAAAACTGCActattttgattaaattttcctataaaagagctt
tcttataataaaatttgAACTAAACAAGCCTATAGACCTACCCTCTTTAc
tcaataaaaagttttaaagtgTGGGAGCTAATAGCAGCAAAAATATTAAG
GGAAAGGGTATTGACTTCAAGGTTAGTAGTTCCGCCTGTCATCCGCCATT
TTTAATATCCGGTACAACACAGATCTGAC Run BLAST on NCBI protein sequence of TCONS_00028938-protein >TCONS_00028938-protein ID=TCONS_00028938-protein|Name=TCONS_00028938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MEKHIKNLEETCRLCCGKVKTGYGYKNVLPAHKFKGEIQSFFNYDIGMDM
RELHPPNLCSKCVRKMRKINIENPIHHHLQSIVIFENHSDTDCKVCSFSM
EPCEFKLITIEFLTLAKIIEVGKKFNFSYAEKLKQHTFVRICDRRGGKDE
AVISPAFVDLTIFIEQQKNKMGEFSWTMSIFEQNIDIASLNIDVPKALTV
NTVEIFFQTVGEFRICEGNYDFPKVIEKRKEGHSDQRDNTRLECKDFTPF
EKLQPTIRHKDCPGLIFGPATSERCEKCSVARKSLLILEKRPSLTSTKPR
PKRPH Run BLAST on NCBI transcript from alignment at sc0000715:138959..140537 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028938 ID=TCONS_00028938|Name=TCONS_00028938|organism=Clytia hemisphaerica|type=transcript|length=1579bp|location=Sequence derived from alignment at sc0000715:138959..140537 (Clytia hemisphaerica)
GTCAGATCTGTGTTGTACCGGATATTAAAAATGGCGGATGACAGGCGGAA
CTACTAACCTTGAAGTCAATACCCTTTCCCTTAATATTTTTGCTGCTATT
AGCTCCCAcactttaaaactttttattgagTAAAGAGGGTAGGTCTATAG
GCTTGTTTAGTTcaaattttattataagaaagctcttttataggaaaatt
taatcaaaatagTGCAGTTTTTTTCATCAGAACCTCTGAGCTGTTTCCCA
AACAAATATCTCGATGAATATGCACCCATTTGCAATGCCCTTCCAAATAT
ATAAAACTGAACTattcttctttcaatttttgtaaaaaatagcaATGTAT
GAGTCGCGGCTCAACGCGGCTTGGCAGTTTTCTGACTGCACCTTGCAATA
TTAAAATTCTACTAGCGCCATCTTGAAAAGATGTAGGAGATTCTGCTTTC
ATCAACGTCgcatcttttaaaatttttattatcaCGTGGTTTGCTCCAAT
GCCGTGGAGAATCCTGAAAGAGTCACGTGGTTTGAAAATTCAGTTGCGTA
ATGATAAAGCTGCAATCAAACCATCACGAGTCAAATCTAACGCACTTGTG
CTTGTATATGGTCGTTTAATGAATTATTTGTTGAATTATTTGGTTTTGGG
TTGATTTAAAAACATggaaaaacatataaaaaacctTGAAGAGACATGTA
GACTTTGTTGTGGTAAAGTAAAGACAGGATATGGCTACAAGAATGTTTTA
CCTGCACACAAATTCAAAGGAGAAATacaatctttttttaattatgaTAT
TGGAATGGATATGAGAGAATTGCATCCACCAAATCTTTGCAGTAAATGTG
TACGTAAAATGAGGAAAATCAACATCGAAAATCCAATCCACCACCATCTG
CAAAGTatagttatttttgaaaatcattcgGACACAGATTGCAAAGTTTG
CAGTTTTAGTATGGAGCCATGTGAATTCAAATTAATCACAATTGAATTTT
TGACTCTTGCAAAGATAATAGAAGTTgggaaaaaattcaacttttcttat
gcagaaaaattaaaacaacatACATTTGTACGTATATGTGATCGTCGTGG
TGGTAAAGATGAAGCAGTTATTTCACCTGCATTTGTTGACTTGACTATAT
TTATTGAGCAGCAGAAAAACAAGATGGGTGAATTTTCATGGACCATGTCC
ATTTTTGAACAAAACATTGATATAGCCTCTTTAAATATTGATGTACCAAA
AGCTCTCACCGTTAACACTgtggaaatcttttttcaaactgttggAGAAT
TTCGGATCTGTGAAGGAAATTATGATTTTCCAAAGGTTATAGAGAAACGT
AAAGAAGGTCACAGTGACCAACGTGATAACACTCGGCTAGAGTGTAAAGA
TTTTACACCATTTGAAAAGCTCCAGCCAACCATACGTCACAAGGATTGTC
CTGGGCTGATTTTTGGACCTGCTACAAGTGAACGATGTGAGAAATGCTCA
GTAGCAAGAAAATCGTTGTTGATACTTGAAAAACGACCATCATTAACGTC
AACCAAGCCTAGACCAAAAAGACCCCATT Coding sequence (CDS) from alignment at sc0000715:138959..140537 >TCONS_00028938 ID=TCONS_00028938|Name=TCONS_00028938|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at sc0000715:138959..140537 (Clytia hemisphaerica)
ATggaaaaacatataaaaaacctTGAAGAGACATGTAGACTTTGTTGTGG
TAAAGTAAAGACAGGATATGGCTACAAGAATGTTTTACCTGCACACAAAT
TCAAAGGAGAAATacaatctttttttaattatgaTATTGGAATGGATATG
AGAGAATTGCATCCACCAAATCTTTGCAGTAAATGTGTACGTAAAATGAG
GAAAATCAACATCGAAAATCCAATCCACCACCATCTGCAAAGTatagtta
tttttgaaaatcattcgGACACAGATTGCAAAGTTTGCAGTTTTAGTATG
GAGCCATGTGAATTCAAATTAATCACAATTGAATTTTTGACTCTTGCAAA
GATAATAGAAGTTgggaaaaaattcaacttttcttatgcagaaaaattaa
aacaacatACATTTGTACGTATATGTGATCGTCGTGGTGGTAAAGATGAA
GCAGTTATTTCACCTGCATTTGTTGACTTGACTATATTTATTGAGCAGCA
GAAAAACAAGATGGGTGAATTTTCATGGACCATGTCCATTTTTGAACAAA
ACATTGATATAGCCTCTTTAAATATTGATGTACCAAAAGCTCTCACCGTT
AACACTgtggaaatcttttttcaaactgttggAGAATTTCGGATCTGTGA
AGGAAATTATGATTTTCCAAAGGTTATAGAGAAACGTAAAGAAGGTCACA
GTGACCAACGTGATAACACTCGGCTAGAGTGTAAAGATTTTACACCATTT
GAAAAGCTCCAGCCAACCATACGTCACAAGGATTGTCCTGGGCTGATTTT
TGGACCTGCTACAAGTGAACGATGTGAGAAATGCTCAGTAGCAAGAAAAT
CGTTGTTGATACTTGAAAAACGACCATCATTAACGTCAACCAAGCCTAGA
CCAAAAAGACCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028938-exon-sc0000715-1491911889:138959..140537 | TCONS_00028938-exon-sc0000715-1491911889:138959..140537 | Clytia hemisphaerica | exon |
| TCONS_00028938-exon-sc0000715-1510915933:138959..140537 | TCONS_00028938-exon-sc0000715-1510915933:138959..140537 | Clytia hemisphaerica | exon |
| TCONS_00028938-exon-sc0000715-1575043694:138959..140537 | TCONS_00028938-exon-sc0000715-1575043694:138959..140537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000715 | supercontig | sc0000715:138959..140537 . |
Blast
The following BLAST results are available for this feature:
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