TCONS_00028946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028946
Unique NameTCONS_00028946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028946 ID=TCONS_00028946|Name=TCONS_00028946|organism=Clytia hemisphaerica|type=transcript|length=359bp
CTCTTTAAACAGCACCAGGGTTAAAGCCCCTGCTTTCTCAGTTTCAAACC
TAAACCTTGTTTCCCGCGAAACCAATGAACCGTCTTCTCCAAACTCACCA
GAGAGAGTTGACGGTGATAGGATTGAGTCTGTAACAAAACCTAAAACACA
AAGACTACTAGTTTGCAAACATCCAGCCATTTTTAGCACTTTCAACGTGC
GCTCTCTATCTCTTGTTAGTTTAGTAGAAAACAAGAGCTTCTTTCGCGTT
TTTCCAAATTCCAAATCGATGTGCTCAGTATTCAAGAGCATAGATTTCTA
CACAAAGACATTGAATTCCTCCACTCAAATCTTGGTAAAAACAAGCTTGT
AACCGCCTC
Run BLAST on NCBI

transcript from alignment at sc0000715:167039..167397

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028946 ID=TCONS_00028946|Name=TCONS_00028946|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000715:167039..167397 (Clytia hemisphaerica)
GAGGCGGTTACAAGCTTGTTTTTACCAAGATTTGAGTGGAGGAATTCAAT
GTCTTTGTGTAGAAATCTATGCTCTTGAATACTGAGCACATCGATTTGGA
ATTTGGAAAAACGCGAAAGAAGCTCTTGTTTTCTACTAAACTAACAAGAG
ATAGAGAGCGCACGTTGAAAGTGCTAAAAATGGCTGGATGTTTGCAAACT
AGTAGTCTTTGTGTTTTAGGTTTTGTTACAGACTCAATCCTATCACCGTC
AACTCTCTCTGGTGAGTTTGGAGAAGACGGTTCATTGGTTTCGCGGGAAA
CAAGGTTTAGGTTTGAAACTGAGAAAGCAGGGGCTTTAACCCTGGTGCTG
TTTAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016438XLOC_016438Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028946-exon-sc0000715-1491911889:167039..167397TCONS_00028946-exon-sc0000715-1491911889:167039..167397Clytia hemisphaericaexon
TCONS_00028946-exon-sc0000715-1510915933:167039..167397TCONS_00028946-exon-sc0000715-1510915933:167039..167397Clytia hemisphaericaexon
TCONS_00028946-exon-sc0000715-1575043694:167039..167397TCONS_00028946-exon-sc0000715-1575043694:167039..167397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000715supercontigsc0000715:167039..167397 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.31327	0.691928	1.07306	1.57199	1.91375	0.50409	0.365572	1.13871	0	0.365417	0	1.20042	0.435891	0.413887	0.632429	0.930179	0.887767	0.897993	0.106558	0.263097	0.821754	0.334625	0.446048	0.493097	3.04727	4.11635	0.153921	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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