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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028958 ID=TCONS_00028958|Name=TCONS_00028958|organism=Clytia hemisphaerica|type=transcript|length=1354bp
TACTGTAGTGTATTCTCAGTACCCGACAATAACAACCCAAAAATTGAAAC
ACCAGAGATCAAAGATACAATGCGCGACATAACGATTTCTTCTAATGGCA
TCAGATATCCCTTCTAAATAAACTTCAACCAAATAAAGCCCCTGGTCCAG
ACAACATTTCTTCACGATTCATGAAAGAGTTTGCTGAGGAACTTACACCT
GCTTTAGAACTCATATTCTCAACTTCACTCGAAAAAGGAGAACTTCCAAA
AGACTGGCTTCATGCCCACGTATCACCAATCTACAAAGGTGGAAACAAAG
ACCGCTGCTCGCCAGAGAACTACCGACCAGTCTCACTAACGAGCATTTCA
TGTAAAACATTAGAACACATTATATATAGCAACATCATTAAACATCTTAA
CAAACACAATTCCATCACTGAGGTCCAACACGGTTTTAGAGAGACAAGGT
CATGCGAATCGCAACTGCTTATCGCTGTCAATGATTTTGCCAAAGCTCTC
AACAACAGGGATCAGATGGACACCATATTGCTAGATTTCAGCAAAGCTTT
TGACAAAGTTGATCATCGAAAACTTTGCCTCAAACTTGCCCACTACGGTA
TCAAGGGTAAATCCCTCAATTGGATCCAATCATTTCTATCAGGACGAACT
CAACAAGTGATCTTAAATGGCAAATCTTCAGAGAAATCAAATGTTACCTC
AGGAGTCCCACAAGGAACGGTCTTAGGACCTCTATTGTTCCTAGTCTATA
TTAACGACATGCCATCAGCTGTTCTCTCCTTGCTTCGACTATTCGCAGCC
GACGCCTACCTATATCGAATTATCAAATCAATTTACGATGCCCTCATCCT
TCAGCAAGATCTTAACAGTCTCCAAGCATGGGAAAAAGATTTCAACATGG
AATTTCACCCCAAAAAATGCAAGGTCTTGACAATTACAAACAAAACGAAA
CCCTTGAAAACATCATACAGTATTCACAATGAAACCCTCGATAAAGTTGA
CTCTGCAAAATACCTTGGAGTCGAAATccataaaaaactaaaatggaaTA
TTCATGTGGCTAACATATGTAAAAAATCGAACCAAATCATCAACTTCCTA
CAGAGAAACCTCCGGGGCTGCAACAGAACCATCAAATCCCAGGCATACAA
GATCTACGTGAAACCCATTCTTAATTATGCATCCTCTGTCTGGAATCCAG
TCAACAACAAAAGCCTCACTAAACAACTGGAGCAAGTCCAACGAAAAGCT
GCGCGTTTCGTCTACTCCAACTGGTCCTGGAAATCCAGCCCCACAACTAT
GATCAACGATCTTGGCTGGGAATCCCTTGAATTCGGTCGTAAGAAAAACA
ATTT Run BLAST on NCBI protein sequence of TCONS_00028958-protein >TCONS_00028958-protein ID=TCONS_00028958-protein|Name=TCONS_00028958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MKEFAEELTPALELIFSTSLEKGELPKDWLHAHVSPIYKGGNKDRCSPEN
YRPVSLTSISCKTLEHIIYSNIIKHLNKHNSITEVQHGFRETRSCESQLL
IAVNDFAKALNNRDQMDTILLDFSKAFDKVDHRKLCLKLAHYGIKGKSLN
WIQSFLSGRTQQVILNGKSSEKSNVTSGVPQGTVLGPLLFLVYINDMPSA
VLSLLRLFAADAYLYRIIKSIYDALILQQDLNSLQAWEKDFNMEFHPKKC
KVLTITNKTKPLKTSYSIHNETLDKVDSAKYLGVEIHKKLKWNIHVANIC
KKSNQIINFLQRNLRGCNRTIKSQAYKIYVKPILNYASSVWNPVNNKSLT
KQLEQVQRKAARFVYSNWSWKSSPTTMINDLGWESLEFGRKKNN Run BLAST on NCBI transcript from alignment at sc0000716:26367..27720 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028958 ID=TCONS_00028958|Name=TCONS_00028958|organism=Clytia hemisphaerica|type=transcript|length=1354bp|location=Sequence derived from alignment at sc0000716:26367..27720 (Clytia hemisphaerica)
AAATTGTTTTTCTTACGACCGAATTCAAGGGATTCCCAGCCAAGATCGTT
GATCATAGTTGTGGGGCTGGATTTCCAGGACCAGTTGGAGTAGACGAAAC
GCGCAGCTTTTCGTTGGACTTGCTCCAGTTGTTTAGTGAGGCTTTTGTTG
TTGACTGGATTCCAGACAGAGGATGCATAATTAAGAATGGGTTTCACGTA
GATCTTGTATGCCTGGGATTTGATGGTTCTGTTGCAGCCCCGGAGGTTTC
TCTGTAGGAAGTTGATGATTTGGTTCGATTTTTTACATATGTTAGCCACA
TGAATAttccattttagttttttatggATTTCGACTCCAAGGTATTTTGC
AGAGTCAACTTTATCGAGGGTTTCATTGTGAATACTGTATGATGTTTTCA
AGGGTTTCGTTTTGTTTGTAATTGTCAAGACCTTGCATTTTTTGGGGTGA
AATTCCATGTTGAAATCTTTTTCCCATGCTTGGAGACTGTTAAGATCTTG
CTGAAGGATGAGGGCATCGTAAATTGATTTGATAATTCGATATAGGTAGG
CGTCGGCTGCGAATAGTCGAAGCAAGGAGAGAACAGCTGATGGCATGTCG
TTAATATAGACTAGGAACAATAGAGGTCCTAAGACCGTTCCTTGTGGGAC
TCCTGAGGTAACATTTGATTTCTCTGAAGATTTGCCATTTAAGATCACTT
GTTGAGTTCGTCCTGATAGAAATGATTGGATCCAATTGAGGGATTTACCC
TTGATACCGTAGTGGGCAAGTTTGAGGCAAAGTTTTCGATGATCAACTTT
GTCAAAAGCTTTGCTGAAATCTAGCAATATGGTGTCCATCTGATCCCTGT
TGTTGAGAGCTTTGGCAAAATCATTGACAGCGATAAGCAGTTGCGATTCG
CATGACCTTGTCTCTCTAAAACCGTGTTGGACCTCAGTGATGGAATTGTG
TTTGTTAAGATGTTTAATGATGTTGCTATATATAATGTGTTCTAATGTTT
TACATGAAATGCTCGTTAGTGAGACTGGTCGGTAGTTCTCTGGCGAGCAG
CGGTCTTTGTTTCCACCTTTGTAGATTGGTGATACGTGGGCATGAAGCCA
GTCTTTTGGAAGTTCTCCTTTTTCGAGTGAAGTTGAGAATATGAGTTCTA
AAGCAGGTGTAAGTTCCTCAGCAAACTCTTTCATGAATCGTGAAGAAATG
TTGTCTGGACCAGGGGCTTTATTTGGTTGAAGTTTATTTAGAAGGGATAT
CTGATGCCATTAGAAGAAATCGTTATGTCGCGCATTGTATCTTTGATCTC
TGGTGTTTCAATTTTTGGGTTGTTATTGTCGGGTACTGAGAATACACTAC
AGTA Coding sequence (CDS) from alignment at sc0000716:26367..27720 >TCONS_00028958 ID=TCONS_00028958|Name=TCONS_00028958|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000716:26367..27720 (Clytia hemisphaerica)
ATTGTTTTTCTTACGACCGAATTCAAGGGATTCCCAGCCAAGATCGTTGA
TCATAGTTGTGGGGCTGGATTTCCAGGACCAGTTGGAGTAGACGAAACGC
GCAGCTTTTCGTTGGACTTGCTCCAGTTGTTTAGTGAGGCTTTTGTTGTT
GACTGGATTCCAGACAGAGGATGCATAATTAAGAATGGGTTTCACGTAGA
TCTTGTATGCCTGGGATTTGATGGTTCTGTTGCAGCCCCGGAGGTTTCTC
TGTAGGAAGTTGATGATTTGGTTCGATTTTTTACATATGTTAGCCACATG
AATAttccattttagttttttatggATTTCGACTCCAAGGTATTTTGCAG
AGTCAACTTTATCGAGGGTTTCATTGTGAATACTGTATGATGTTTTCAAG
GGTTTCGTTTTGTTTGTAATTGTCAAGACCTTGCATTTTTTGGGGTGAAA
TTCCATGTTGAAATCTTTTTCCCATGCTTGGAGACTGTTAAGATCTTGCT
GAAGGATGAGGGCATCGTAAATTGATTTGATAATTCGATATAGGTAGGCG
TCGGCTGCGAATAGTCGAAGCAAGGAGAGAACAGCTGATGGCATGTCGTT
AATATAGACTAGGAACAATAGAGGTCCTAAGACCGTTCCTTGTGGGACTC
CTGAGGTAACATTTGATTTCTCTGAAGATTTGCCATTTAAGATCACTTGT
TGAGTTCGTCCTGATAGAAATGATTGGATCCAATTGAGGGATTTACCCTT
GATACCGTAGTGGGCAAGTTTGAGGCAAAGTTTTCGATGATCAACTTTGT
CAAAAGCTTTGCTGAAATCTAGCAATATGGTGTCCATCTGATCCCTGTTG
TTGAGAGCTTTGGCAAAATCATTGACAGCGATAAGCAGTTGCGATTCGCA
TGACCTTGTCTCTCTAAAACCGTGTTGGACCTCAGTGATGGAATTGTGTT
TGTTAAGATGTTTAATGATGTTGCTATATATAATGTGTTCTAATGTTTTA
CATGAAATGCTCGTTAGTGAGACTGGTCGGTAGTTCTCTGGCGAGCAGCG
GTCTTTGTTTCCACCTTTGTAGATTGGTGATACGTGGGCATGAAGCCAGT
CTTTTGGAAGTTCTCCTTTTTCGAGTGAAGTTGAGAATATGAGTTCTAAA
GCAGGTGTAAGTTCCTCAGCAAACTCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028958-exon-sc0000716-1491911889:26367..27720 | TCONS_00028958-exon-sc0000716-1491911889:26367..27720 | Clytia hemisphaerica | exon |
| TCONS_00028958-exon-sc0000716-1510915933:26367..27720 | TCONS_00028958-exon-sc0000716-1510915933:26367..27720 | Clytia hemisphaerica | exon |
| TCONS_00028958-exon-sc0000716-1575043694:26367..27720 | TCONS_00028958-exon-sc0000716-1575043694:26367..27720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000716 | supercontig | sc0000716:26367..27720 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
BLAST of TCONS_00028958 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 7.012e-24 Identity = 69/224 (30.80%), Postives = 111/224 (49.55%), Query Frame = 3
Query: 105 ISLLNKLQPNKAPGPDNISSRFMKEFAEELTPALELIFSTSLEKGELPKDWLHAHVSPIYKGGNKDRCSPENYRPVSLTSISCKTLEHIIYSNIIKHLNKHNSITEVQHGFRETRSCESQLLIAVNDFAKALNNRDQMDTIL-LDFSKAFDKVDHRKLCLKLAHYGIKGKSLNWIQSFLSGRTQQVILNGKSSEKSNVTSGVPQGTVLGPLLFLVYINDMPSAV 773
++++N L K+PGPD ++ F + + EEL P L +F + ++G LP + A + I K G +D EN+RP+SL +I K L I+ + I +H+ K I Q GF + ++N +D+ I+ +D KAFDK+ + L GI G L I++ T +ILNG+ E + +G QG L PLLF + + + A+
Sbjct: 459 VAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPG-RDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAI 679
The following BLAST results are available for this feature:
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