TCONS_00028959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028959
Unique NameTCONS_00028959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028959 ID=TCONS_00028959|Name=TCONS_00028959|organism=Clytia hemisphaerica|type=transcript|length=581bp
TTCGACATTTTGTTCTGttaaaaatttagaattctTGTAGAGTTTTGATA
TTAACATACCGTCTTCGTATATTGCTTTATTGAGAATCTTATTTCCCAAA
AGATATAGTAACGACGACCAGAGAGATTCGTTTCCTTCCAAGAGGTTGTC
TGACGAGTGAttcatcaaaacattgatcaTTTGCAAAAGTGCatcacgaa
ttgaaaaatttgaggaaCTAATTGGGTATGAACCATCTGGGGTTTCGATA
GGTTGGACTGTTGGTGAAGTCGAATTCAACGCTTGTTCAGTGGGTGGGTT
TATTGGTGGGATGAAATTTGAAAGTGGTTCGACGGACTTGTCTGTTCGGG
TGAACGCAGAGGATATAGGGCAAAGTCGTTTGCCGTATCGCCCGTAACAT
GTAGCGCACAAGAAATTTGCCCTCTCTGGTAGcaggttttgttttttcaa
cTCGTCTATAATGACGGGCCGGAACACTCGCGAGGTCTCAATATGCCATG
CCTTTTCTGATGATACCGTTTTGTCGTGAACAATACACTTACACTCTTTT
GAAAAGTCACTTTCTGATGCACAACTTCTCC
Run BLAST on NCBI

protein sequence of TCONS_00028959-protein

>TCONS_00028959-protein ID=TCONS_00028959-protein|Name=TCONS_00028959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
RSCASESDFSKECKCIVHDKTVSSEKAWHIETSRVFRPVIIDELKKQNLL
PERANFLCATCYGRYGKRLCPISSAFTRTDKSVEPLSNFIPPINPPTEQA
LNSTSPTVQPIETPDGSYPISSSNFSIRDALLQMINVLMNHSSDNLLEGN
ESLWSSLLYLLGNKILNKAIYEDGMLISKLYKNSKFLTEQNVE
Run BLAST on NCBI

transcript from alignment at sc0000716:29932..30512

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028959 ID=TCONS_00028959|Name=TCONS_00028959|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at sc0000716:29932..30512 (Clytia hemisphaerica)
GGAGAAGTTGTGCATCAGAAAGTGACTTTTCAAAAGAGTGTAAGTGTATT
GTTCACGACAAAACGGTATCATCAGAAAAGGCATGGCATATTGAGACCTC
GCGAGTGTTCCGGCCCGTCATTATAGACGAgttgaaaaaacaaaacctgC
TACCAGAGAGGGCAAATTTCTTGTGCGCTACATGTTACGGGCGATACGGC
AAACGACTTTGCCCTATATCCTCTGCGTTCACCCGAACAGACAAGTCCGT
CGAACCACTTTCAAATTTCATCCCACCAATAAACCCACCCACTGAACAAG
CGTTGAATTCGACTTCACCAACAGTCCAACCTATCGAAACCCCAGATGGT
TCATACCCAATTAGttcctcaaatttttcaattcgtgatGCACTTTTGCA
AAtgatcaatgttttgatgaaTCACTCGTCAGACAACCTCTTGGAAGGAA
ACGAATCTCTCTGGTCGTCGTTACTATATCTTTTGGGAAATAAGATTCTC
AATAAAGCAATATACGAAGACGGTATGTTAATATCAAAACTCTACAagaa
ttctaaatttttaaCAGAACAAAATGTCGAA

Coding sequence (CDS) from alignment at sc0000716:29932..30512

>TCONS_00028959 ID=TCONS_00028959|Name=TCONS_00028959|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0000716:29932..30512 (Clytia hemisphaerica)
AGAAGTTGTGCATCAGAAAGTGACTTTTCAAAAGAGTGTAAGTGTATTGT
TCACGACAAAACGGTATCATCAGAAAAGGCATGGCATATTGAGACCTCGC
GAGTGTTCCGGCCCGTCATTATAGACGAgttgaaaaaacaaaacctgCTA
CCAGAGAGGGCAAATTTCTTGTGCGCTACATGTTACGGGCGATACGGCAA
ACGACTTTGCCCTATATCCTCTGCGTTCACCCGAACAGACAAGTCCGTCG
AACCACTTTCAAATTTCATCCCACCAATAAACCCACCCACTGAACAAGCG
TTGAATTCGACTTCACCAACAGTCCAACCTATCGAAACCCCAGATGGTTC
ATACCCAATTAGttcctcaaatttttcaattcgtgatGCACTTTTGCAAA
tgatcaatgttttgatgaaTCACTCGTCAGACAACCTCTTGGAAGGAAAC
GAATCTCTCTGGTCGTCGTTACTATATCTTTTGGGAAATAAGATTCTCAA
TAAAGCAATATACGAAGACGGTATGTTAATATCAAAACTCTACAagaatt
ctaaatttttaaCAGAACAAAATGTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016448XLOC_016448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028959-exon-sc0000716-1491911889:29932..30512TCONS_00028959-exon-sc0000716-1491911889:29932..30512Clytia hemisphaericaexon
TCONS_00028959-exon-sc0000716-1510915933:29932..30512TCONS_00028959-exon-sc0000716-1510915933:29932..30512Clytia hemisphaericaexon
TCONS_00028959-exon-sc0000716-1575043694:29932..30512TCONS_00028959-exon-sc0000716-1575043694:29932..30512Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028959-proteinTCONS_00028959-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000716supercontigsc0000716:29932..30512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381481	0	0.107983	0	2.44363	2.13425	2.57488	2.75494	1.76807	3.08596	3.76829	2.73119	1.83941	2.10785	0.216618	0.29058	0.286376	0.220145	0	0.106088	0.0922094	0.13493	0	0.198829	5.01735	7.95049	0.523086	0.139563	0.423414	0.107848
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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