TCONS_00028966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028966
Unique NameTCONS_00028966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028966 ID=TCONS_00028966|Name=TCONS_00028966|organism=Clytia hemisphaerica|type=transcript|length=232bp
GCTACAACAATCATTTTGGAGATGTCCAAGACGATACAACAAATCCAATG
CACTTCTTCAACTCTGTTGAGGAAGCCGGAAGCTCAATCACTTATCGATG
TACAAAATGCAGAGACTGTTCAACCTGCAAAGAATCACTCAACGACATAT
GTAGCATCAAAGAGGAGGCAGAGCAAGAGATTATCAACAACTCTGTCACA
GTCAACATCAAGGAGAGAAGTTCAACAGCANN
Run BLAST on NCBI

transcript from alignment at sc0000716:163513..163744

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028966 ID=TCONS_00028966|Name=TCONS_00028966|organism=Clytia hemisphaerica|type=transcript|length=232bp|location=Sequence derived from alignment at sc0000716:163513..163744 (Clytia hemisphaerica)
NNTGCTGTTGAACTTCTCTCCTTGATGTTGACTGTGACAGAGTTGTTGAT
AATCTCTTGCTCTGCCTCCTCTTTGATGCTACATATGTCGTTGAGTGATT
CTTTGCAGGTTGAACAGTCTCTGCATTTTGTACATCGATAAGTGATTGAG
CTTCCGGCTTCCTCAACAGAGTTGAAGAAGTGCATTGGATTTGTTGTATC
GTCTTGGACATCTCCAAAATGATTGTTGTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016455XLOC_016455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028966-exon-sc0000716-1491911889:163513..163744TCONS_00028966-exon-sc0000716-1491911889:163513..163744Clytia hemisphaericaexon
TCONS_00028966-exon-sc0000716-1510915933:163513..163744TCONS_00028966-exon-sc0000716-1510915933:163513..163744Clytia hemisphaericaexon
TCONS_00028966-exon-sc0000716-1575043694:163513..163744TCONS_00028966-exon-sc0000716-1575043694:163513..163744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000716supercontigsc0000716:163513..163744 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68963	6.2137	4.1912	2.62271	0.322844	2.57757	0	0.225467	2.49345	3.7667	1.55356	0	0.125821	1.41307	1.31255	2.11971	0.850957	0.566161	0	4.61969	0	2.23527	0	1.09284	2.08666	0	0	2.59117	2.53939	0.847331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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