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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028967 ID=TCONS_00028967|Name=TCONS_00028967|organism=Clytia hemisphaerica|type=transcript|length=1082bp
CAAATGGACAATCTGGTGGTCAATCAGGTGGTCAAGCAAATGGTCAATCA
ATCACTGAATGTTTTGTGTGTGGTGCTACTGATCATGTGCAAACCAATGG
TCCAAATGGGACAAAACTTGTCCAATACCTTGCATGCAAGAAGTTTATGT
CACCTGCTGAtcgttttcaatttcttcttaCAAATGGTTTTTGTTTCCAA
TGTCTCTACCCTGGCGCAAACGTCAACCAAGGAAAACATCGAGATTGGAA
GTGTCAACATCAGTTCGCTTGCAAAAACTCGTCACACAACAGATTCCCAA
GAACAAAGCATGTTCTCGTGTGCGACGAGCAAAAAAATGATCAACACAAC
AAAGACGTGCTTGAACACTACAAAGCAAGATGCATCCTGAAACAACCACT
TCCTACGCATTCAAAGAACATCAGCATCTTCCATTCGATCTTCAAATCTC
AACTCATCAAACCTTCACCAACTGACGATCAACATGACGCAATTTTCATC
CTTCAACCAATCAGGATTGAAAATTCCAACTTCAACATTTTCTACGATAA
CGGTTGTAGTGATTTTATCAGTCGTTATCAATCCGTGCAACGTCTTGGTC
CATCAAGAGCAAAACAAGTCTAAGATGGCACAATCCATATGAAAGGAATT
GCTGGCATCTCAAGTCCAACCAATCATGGTATCTATGAAGTCAACTTACC
TCTACGAATTGGGGGTAATGCACTGATGACTGGACCTTGTCTCGATCGAG
TCACAAATACGTTCCCTATGTATCCACTCAATGGGGAAGTTTTCAACAAC
ATCAAGACAGCTTTCATTACGAATGGAGGCAATGCATCGACACTTCCAAC
AGTTCCAGAGAAGGTCGGTGGTGATGTCGACTTCATCATTGGTATCAAAT
ATCTACGTCATTTTCCAAAACCCATCTTCCAAATGCTATCAGGTCTCACC
ATCTATGAGTCATCCTTCGAAAGTAACGAGGGTTCCTTTGGTTTGATTGG
AGGACCACATCAGGTATTCAAtttcattcaccaaaatcaatcaaccaatt
ttGTCACCAATCAACTCAGACTCTACTCCTTT Run BLAST on NCBI protein sequence of TCONS_00028967-protein >TCONS_00028967-protein ID=TCONS_00028967-protein|Name=TCONS_00028967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
NGQSGGQSGGQANGQSITECFVCGATDHVQTNGPNGTKLVQYLACKKFMS
PADRFQFLLTNGFCFQCLYPGANVNQGKHRDWKCQHQFACKNSSHNRFPR
TKHVLVCDEQKNDQHNKDVLEHYKARCILKQPLPTHSKNISIFHSIFKSQ
LIKPSPTDDQHDAIFILQPIRIENSNFNIFYDNGCSDFISRYQSVQRLGP
SRAKQV Run BLAST on NCBI transcript from alignment at sc0000716:163897..164978 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028967 ID=TCONS_00028967|Name=TCONS_00028967|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at sc0000716:163897..164978 (Clytia hemisphaerica)
AAAGGAGTAGAGTCTGAGTTGATTGGTGACaaaattggttgattgatttt
ggtgaatgaaaTTGAATACCTGATGTGGTCCTCCAATCAAACCAAAGGAA
CCCTCGTTACTTTCGAAGGATGACTCATAGATGGTGAGACCTGATAGCAT
TTGGAAGATGGGTTTTGGAAAATGACGTAGATATTTGATACCAATGATGA
AGTCGACATCACCACCGACCTTCTCTGGAACTGTTGGAAGTGTCGATGCA
TTGCCTCCATTCGTAATGAAAGCTGTCTTGATGTTGTTGAAAACTTCCCC
ATTGAGTGGATACATAGGGAACGTATTTGTGACTCGATCGAGACAAGGTC
CAGTCATCAGTGCATTACCCCCAATTCGTAGAGGTAAGTTGACTTCATAG
ATACCATGATTGGTTGGACTTGAGATGCCAGCAATTCCTTTCATATGGAT
TGTGCCATCTTAGACTTGTTTTGCTCTTGATGGACCAAGACGTTGCACGG
ATTGATAACGACTGATAAAATCACTACAACCGTTATCGTAGAAAATGTTG
AAGTTGGAATTTTCAATCCTGATTGGTTGAAGGATGAAAATTGCGTCATG
TTGATCGTCAGTTGGTGAAGGTTTGATGAGTTGAGATTTGAAGATCGAAT
GGAAGATGCTGATGTTCTTTGAATGCGTAGGAAGTGGTTGTTTCAGGATG
CATCTTGCTTTGTAGTGTTCAAGCACGTCTTTGTTGTGTTGATCATTTTT
TTGCTCGTCGCACACGAGAACATGCTTTGTTCTTGGGAATCTGTTGTGTG
ACGAGTTTTTGCAAGCGAACTGATGTTGACACTTCCAATCTCGATGTTTT
CCTTGGTTGACGTTTGCGCCAGGGTAGAGACATTGGAAACAAAAACCATT
TGtaagaagaaattgaaaacgaTCAGCAGGTGACATAAACTTCTTGCATG
CAAGGTATTGGACAAGTTTTGTCCCATTTGGACCATTGGTTTGCACATGA
TCAGTAGCACCACACACAAAACATTCAGTGATTGATTGACCATTTGCTTG
ACCACCTGATTGACCACCAGATTGTCCATTTG Coding sequence (CDS) from alignment at sc0000716:163897..164978 >TCONS_00028967 ID=TCONS_00028967|Name=TCONS_00028967|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0000716:163897..164978 (Clytia hemisphaerica)
TTAGACTTGTTTTGCTCTTGATGGACCAAGACGTTGCACGGATTGATAAC
GACTGATAAAATCACTACAACCGTTATCGTAGAAAATGTTGAAGTTGGAA
TTTTCAATCCTGATTGGTTGAAGGATGAAAATTGCGTCATGTTGATCGTC
AGTTGGTGAAGGTTTGATGAGTTGAGATTTGAAGATCGAATGGAAGATGC
TGATGTTCTTTGAATGCGTAGGAAGTGGTTGTTTCAGGATGCATCTTGCT
TTGTAGTGTTCAAGCACGTCTTTGTTGTGTTGATCATTTTTTTGCTCGTC
GCACACGAGAACATGCTTTGTTCTTGGGAATCTGTTGTGTGACGAGTTTT
TGCAAGCGAACTGATGTTGACACTTCCAATCTCGATGTTTTCCTTGGTTG
ACGTTTGCGCCAGGGTAGAGACATTGGAAACAAAAACCATTTGtaagaag
aaattgaaaacgaTCAGCAGGTGACATAAACTTCTTGCATGCAAGGTATT
GGACAAGTTTTGTCCCATTTGGACCATTGGTTTGCACATGATCAGTAGCA
CCACACACAAAACATTCAGTGATTGATTGACCATTTGCTTGACCACCTGA
TTGACCACCAGATTGTCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028967-exon-sc0000716-1491911889:163897..164978 | TCONS_00028967-exon-sc0000716-1491911889:163897..164978 | Clytia hemisphaerica | exon |
| TCONS_00028967-exon-sc0000716-1510915933:163897..164978 | TCONS_00028967-exon-sc0000716-1510915933:163897..164978 | Clytia hemisphaerica | exon |
| TCONS_00028967-exon-sc0000716-1575043694:163897..164978 | TCONS_00028967-exon-sc0000716-1575043694:163897..164978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000716 | supercontig | sc0000716:163897..164978 . |
Blast
The following BLAST results are available for this feature:
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