TCONS_00028968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028968
Unique NameTCONS_00028968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028968 ID=TCONS_00028968|Name=TCONS_00028968|organism=Clytia hemisphaerica|type=transcript|length=378bp
GTAAATCACACATTGAGGAGCAATCCAAAGAGCTGAAGGAAATACCATCA
AAACTTTGTGAACTACTCGGCCTTCGTCCAGATATGGAGAAATACAACAG
TTTGAAGACAAAGTATGAAGCACTCGTCAAATTGAGAGCAGCATACCACG
TAAAGATTAATGATGAAGTCAAACTTAGAGAATTCGACAAGCTTGAATCG
TTCAAGAAGAGCCGACTNAATTAAAATCATAGACTCTCTGAGTAAAATAA
CTAATACAATGAGAGATCTCATGCAACTTGCTGCAAAACACAATATTGAA
AATGAACTTATTTATAGTAACGCATTTTCTCAAATCGTCAGCAATCTAGG
AGATAGCAGAATGATGAGATGGCTGCAA
Run BLAST on NCBI

transcript from alignment at sc0000716:165280..165657

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028968 ID=TCONS_00028968|Name=TCONS_00028968|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at sc0000716:165280..165657 (Clytia hemisphaerica)
TTGCAGCCATCTCATCATTCTGCTATCTCCTAGATTGCTGACGATTTGAG
AAAATGCGTTACTATAAATAAGTTCATTTTCAATATTGTGTTTTGCAGCA
AGTTGCATGAGATCTCTCATTGTATTAGTTATTTTACTCAGAGAGTCTAT
GATTTTAATTNAGTCGGCTCTTCTTGAACGATTCAAGCTTGTCGAATTCT
CTAAGTTTGACTTCATCATTAATCTTTACGTGGTATGCTGCTCTCAATTT
GACGAGTGCTTCATACTTTGTCTTCAAACTGTTGTATTTCTCCATATCTG
GACGAAGGCCGAGTAGTTCACAAAGTTTTGATGGTATTTCCTTCAGCTCT
TTGGATTGCTCCTCAATGTGTGATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016457XLOC_016457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028968-exon-sc0000716-1491911889:165280..165657TCONS_00028968-exon-sc0000716-1491911889:165280..165657Clytia hemisphaericaexon
TCONS_00028968-exon-sc0000716-1510915933:165280..165657TCONS_00028968-exon-sc0000716-1510915933:165280..165657Clytia hemisphaericaexon
TCONS_00028968-exon-sc0000716-1575043694:165280..165657TCONS_00028968-exon-sc0000716-1575043694:165280..165657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000716supercontigsc0000716:165280..165657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13545	1.25857	0.689578	0.668978	0.283099	0.289447	0.704088	0.589097	0	0	0	0	0	0	0	0.188412	0.472775	0	0	0.252388	0	0	0.0780926	0.1992	0.45078	0.201155	0	1.20818	0	0.89126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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