TCONS_00028971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028971
Unique NameTCONS_00028971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1077

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028971 ID=TCONS_00028971|Name=TCONS_00028971|organism=Clytia hemisphaerica|type=transcript|length=1077bp
AACAAGCAATAATTCAAATGACTAGCCATCTTTCTAACCTATTTTCGCGG
ACAATTGGCTatagaaattttggttgtttagAAAGTGCACCGAACCGACC
CTCTGAAAAAGGCAGCTCTTTAGTCGACTTCGCCCGTCTAAAACGTCAAA
TCGAGCAAGTGTGCGAGAAACGTTGCTTAGCTATACATTTCAGGTCGAGC
CCTGGAATTagcaaaattttttcttactaTCTCCTGTATAAGCTTTTTAA
ATGATCttaatttaaataaataaaGCCGACCTTATAACCTATTTTCGTGG
ATTATATAAATAAATACGTCCAAATGTCATAATCattatacaaaatttat
ttataaaagCTTGCTTAAGTCTGATAATACAGCTGAGAGTTCCGATCGTG
ATTCCGGTTGTGGCATGGTCATAAAGCTTGCAACTTTTCTAAGTTGCGTA
CTTTTTACATAAGATCCGATTAGATCAAAATTGTATCCCAAAGTATAGAC
ATCACTAGCATAAGAGACATAGGATCCAGGATTATTTCGAAGTTCAAAAG
CGAGGTGTTTATGGCGGGTATTATACCTCGCATGCTTAGCTGTGCCAGGC
TTAATAGAATACATGACAGGATCATCGACAAGGGTACATTTACCAAAATC
AATTATCTTGACATGACGCATGTCCCGTAAAAGAATATTCCCACTGTGAA
GGTCATTGTGGAGCAGTCCACGATCATGAAACGCATCAAGTGCACGAACC
AAATCCAAACAAACATGTAACCAATGTGTAAAAACTAGCTCTTGACTCAA
TACGATTGCAAGCGAAGGTGCAGTTGTTTGATCACCAATATACTCGAATA
AAAGACTCTCAGGACTCGATACCATaccaaacaaataaacaaagtttTCG
TGACCTGTCATCTGTCGACAAACCTTTGCTTCAGCCAAAATCGAGGTACG
GGTGCTTTTATTGCTGTAACTTTTAACAGCAATCTTCTGGTTAATGCTTT
TAATGAAGCCAGTGTTCACGGTCCCATAAACGCCGGAACCCAACTCTTTG
CAATCAATTTCAACATCAGTGGATTCT
Run BLAST on NCBI

transcript from alignment at sc0000717:10607..12024+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028971 ID=TCONS_00028971|Name=TCONS_00028971|organism=Clytia hemisphaerica|type=transcript|length=1418bp|location=Sequence derived from alignment at sc0000717:10607..12024+ (Clytia hemisphaerica)
AACAAGCAATAATTCAAATGACTAGCCATCTTTCTAACCTATTTTCGCGG
ACAATTGGCTatagaaattttggttgtttagAAAGTGCACCGAACCGACC
CTCTGAAAAAGGCAGTTCTTTAGTCGACTTGCCCGTCTAAAACGTCAAAT
CGAGCAGGTGTGCGAGAAACGTTGCTTAGCTAACTAGAATGACTAGCCAT
CTTTCTAACCTATTTTCGCGGACAATTGGCTatagaaattttggttgttt
agAAAGTGCACCGAACCGACCCTCTGAAAAAGGCAGTTCTTTAGTCGACT
TGCCCGTCTAAAACGTCAAATCGAGCAGGTGTGCGAGAAACGTTGCTTAG
CTAACTAAAATGACTAACCATCTATCTAACCTATTTTCGTGGACAATTGG
CTATATAAATTTTGGTTGTTTAGAAAGTGCACCAAACCGACCCTCTGAAA
AGGCAGCTCTTTAGTCGACTTCGCCCGTCTAAAACGTCAAATCGAGCAAG
TGTGCGAGAAACGTTGCTTAGCTATACATTTCAGGTCGAGCCCTGGAATT
agcaaaattttttcttactaTCTCCTGTATAAGCTTTTTAAATGATCtta
atttaaataaataaaGCCGACCTTATAACCTATTTTCGTGGATTATATAA
ATAAATACGTCCAAATGTCATAATCattatacaaaatttatttataaaag
CTTGCTTAAGTCTGATAATACAGCTGAGAGTTCCGATCGTGATTCCGGTT
GTGGCATGGTCATAAAGCTTGCAACTTTTCTAAGTTGCGTACTTTTTACA
TAAGATCCGATTAGATCAAAATTGTATCCCAAAGTATAGACATCACTAGC
ATAAGAGACATAGGATCCAGGATTATTTCGAAGTTCAAAAGCGAGGTGTT
TATGGCGGGTATTATACCTCGCATGCTTAGCTGTGCCAGGCTTAATAGAA
TACATGACAGGATCATCGACAAGGGTACATTTACCAAAATCAATTATCTT
GACATGACGCATGTCCCGTAAAAGAATATTCCCACTGTGAAGGTCATTGT
GGAGCAGTCCACGATCATGAAACGCATCAAGTGCACGAACCAAATCCAAA
CAAACATGTAACCAATGTGTAAAAACTAGCTCTTGACTCAATACGATTGC
AAGCGAAGGTGCAGTTGTTTGATCACCAATATACTCGAATAAAAGACTCT
CAGGACTCGATACCATaccaaacaaataaacaaagtttTCGTGACCTGTC
ATCTGTCGACAAACCTTTGCTTCAGCCAAAATCGAGGTACGGGTGCTTTT
ATTGCTGTAACTTTTAACAGCAATCTTCTGGTTAATGCTTTTAATGAAGC
CAGTGTTCACGGTCCCATAAACGCCGGAACCCAACTCTTTGCAATCAATT
TCAACATCAGTGGATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016459XLOC_016459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028971-exon-sc0000717-1491911889:10607..10717TCONS_00028971-exon-sc0000717-1491911889:10607..10717Clytia hemisphaericaexon
TCONS_00028971-exon-sc0000717-1510915933:10607..10717TCONS_00028971-exon-sc0000717-1510915933:10607..10717Clytia hemisphaericaexon
TCONS_00028971-exon-sc0000717-1575043694:10607..10717TCONS_00028971-exon-sc0000717-1575043694:10607..10717Clytia hemisphaericaexon
TCONS_00028971-exon-sc0000717-1491911889:11059..12024TCONS_00028971-exon-sc0000717-1491911889:11059..12024Clytia hemisphaericaexon
TCONS_00028971-exon-sc0000717-1510915933:11059..12024TCONS_00028971-exon-sc0000717-1510915933:11059..12024Clytia hemisphaericaexon
TCONS_00028971-exon-sc0000717-1575043694:11059..12024TCONS_00028971-exon-sc0000717-1575043694:11059..12024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000717supercontigsc0000717:10607..12024 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.454812	0.563479	0	0	10.0702	6.25433	1.50215	2.35102	0.915998	3.59976	2.40906	0.10122	0	0.388331	0	0.323665	1.19917	0.407097	0	0	0.089358	0.149067	0.182559	0.116388	0.119356	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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