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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028983 ID=TCONS_00028983|Name=TCONS_00028983|organism=Clytia hemisphaerica|type=transcript|length=1125bp
TATGAAACACGAGGCTACgacaaaacgaaagtgataaAAACATGTCTCGA
TAAACCTAACATAAAATATATACTCAACactataaacaataaaataagCG
AGACTCATCTCGCAGGAGGAGTTCATAATGGGGCGCGTAAAGCGCACGAA
TAAATGTTAACAAAAGGTAATCCACGAAGGAGTTTACGAATGGGGCGCGA
AAGCACCAAAATAACAAATAAAATAAACAACAACTGGCGTGGTCACTTCT
TCATTCTTCATTCTCCGATTCTTCATGACCTAGTTCAAATTCACCAGATC
GCATCCATAATGGTTGGTTGCGATTACGCGTAGGGCGACGCGGTTGTTCA
TTAGCGACAGGTTGTTGAGTAGATAATTCAGACTCATGAATAGTTTCAGT
ATCTGAGTCACTGTCCTCCATAGATGGTAACCGGTAGCTTTGCGAACCGT
CAGATAATGGAACAACTGGGATGATCTCGGTGAGTTTAAGGAGGTATCGT
TTGGAACGAAGTTGTGATTTTACGAGTTTTTGTAGCAAGCAAGAATCGCC
CTCGATGGAAACGATGATATATCGATCACGTGGTTTGGTTTTGTCTCGTT
CCGATTTGATATAAACAAGGGAGCCAACTTTGACATCAGCGATGGATGCT
AAGTGTCCGCCACGTGCTTTGTGTTTAGCACTTGACGCATGATTGGCTTT
TCGTGAGTTAGTTTTCGTCTCACAAATAACTTCGTCTGGTGTGTAGATGG
CTTTGCCGGAGAACTGATCTCGTTGGTGAAAGATTTCCCAAGCCGACAAA
CCAGGCATGCGTAATCTGGAATTAAGCTGAGAAACAACATTGGCTAGTGA
AATGGACGACATTGGTCCACCGTCAGGCATTTGGCGAACAATTTCTTTGT
GGAGCTCGTTGATGGCTTTTTCTGCAACTGGGTTCTTGTTTGGATTCTTA
ACTCTTCCGTAGTCAAGGGTTATTTGATGTTGTTGAAGGACAAGATTATC
ACGAAGGGCGTAAAGTCCAGGTGCATTGTCGACTCGGACAATAGCGGCTG
TTTGAGGTGTTGGACGCAGAAGTGACACTGATGTAATCAAAGCTTCAAGC
ATGGTGTCTTGGTTTTCGTCTGTGT Run BLAST on NCBI protein sequence of TCONS_00028983-protein >TCONS_00028983-protein ID=TCONS_00028983-protein|Name=TCONS_00028983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
TDENQDTMLEALITSVSLLRPTPQTAAIVRVDNAPGLYALRDNLVLQQHQ
ITLDYGRVKNPNKNPVAEKAINELHKEIVRQMPDGGPMSSISLANVVSQL
NSRLRMPGLSAWEIFHQRDQFSGKAIYTPDEVICETKTNSRKANHASSAK
HKARGGHLASIADVKVGSLVYIKSERDKTKPRDRYIIVSIEGDSCLLQKL
VKSQLRSKRYLLKLTEIIPVVPLSDGSQSYRLPSMEDSDSDTETIHESEL
STQQPVANEQPRRPTRNRNQPLWMRSGEFELGHEESENEE Run BLAST on NCBI transcript from alignment at sc0000717:92727..93851 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028983 ID=TCONS_00028983|Name=TCONS_00028983|organism=Clytia hemisphaerica|type=transcript|length=1125bp|location=Sequence derived from alignment at sc0000717:92727..93851 (Clytia hemisphaerica)
ACACAGACGAAAACCAAGACACCATGCTTGAAGCTTTGATTACATCAGTG
TCACTTCTGCGTCCAACACCTCAAACAGCCGCTATTGTCCGAGTCGACAA
TGCACCTGGACTTTACGCCCTTCGTGATAATCTTGTCCTTCAACAACATC
AAATAACCCTTGACTACGGAAGAGTTAAGAATCCAAACAAGAACCCAGTT
GCAGAAAAAGCCATCAACGAGCTCCACAAAGAAATTGTTCGCCAAATGCC
TGACGGTGGACCAATGTCGTCCATTTCACTAGCCAATGTTGTTTCTCAGC
TTAATTCCAGATTACGCATGCCTGGTTTGTCGGCTTGGGAAATCTTTCAC
CAACGAGATCAGTTCTCCGGCAAAGCCATCTACACACCAGACGAAGTTAT
TTGTGAGACGAAAACTAACTCACGAAAAGCCAATCATGCGTCAAGTGCTA
AACACAAAGCACGTGGCGGACACTTAGCATCCATCGCTGATGTCAAAGTT
GGCTCCCTTGTTTATATCAAATCGGAACGAGACAAAACCAAACCACGTGA
TCGATATATCATCGTTTCCATCGAGGGCGATTCTTGCTTGCTACAAAAAC
TCGTAAAATCACAACTTCGTTCCAAACGATACCTCCTTAAACTCACCGAG
ATCATCCCAGTTGTTCCATTATCTGACGGTTCGCAAAGCTACCGGTTACC
ATCTATGGAGGACAGTGACTCAGATACTGAAACTATTCATGAGTCTGAAT
TATCTACTCAACAACCTGTCGCTAATGAACAACCGCGTCGCCCTACGCGT
AATCGCAACCAACCATTATGGATGCGATCTGGTGAATTTGAACTAGGTCA
TGAAGAATCGGAGAATGAAGAATGAAGAAGTGACCACGCCAGTTGTTGTT
TATTTTATTTGTTATTTTGGTGCTTTCGCGCCCCATTCGTAAACTCCTTC
GTGGATTACCTTTTGTTAACATTTATTCGTGCGCTTTACGCGCCCCATTA
TGAACTCCTCCTGCGAGATGAGTCTCGcttattttattgtttatagtGTT
GAGTATATATTTTATGTTAGGTTTATCGAGACATGTTTttatcactttcg
ttttgtcGTAGCCTCGTGTTTCATA Coding sequence (CDS) from alignment at sc0000717:92727..93851 >TCONS_00028983 ID=TCONS_00028983|Name=TCONS_00028983|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at sc0000717:92727..93851 (Clytia hemisphaerica)
ACAGACGAAAACCAAGACACCATGCTTGAAGCTTTGATTACATCAGTGTC
ACTTCTGCGTCCAACACCTCAAACAGCCGCTATTGTCCGAGTCGACAATG
CACCTGGACTTTACGCCCTTCGTGATAATCTTGTCCTTCAACAACATCAA
ATAACCCTTGACTACGGAAGAGTTAAGAATCCAAACAAGAACCCAGTTGC
AGAAAAAGCCATCAACGAGCTCCACAAAGAAATTGTTCGCCAAATGCCTG
ACGGTGGACCAATGTCGTCCATTTCACTAGCCAATGTTGTTTCTCAGCTT
AATTCCAGATTACGCATGCCTGGTTTGTCGGCTTGGGAAATCTTTCACCA
ACGAGATCAGTTCTCCGGCAAAGCCATCTACACACCAGACGAAGTTATTT
GTGAGACGAAAACTAACTCACGAAAAGCCAATCATGCGTCAAGTGCTAAA
CACAAAGCACGTGGCGGACACTTAGCATCCATCGCTGATGTCAAAGTTGG
CTCCCTTGTTTATATCAAATCGGAACGAGACAAAACCAAACCACGTGATC
GATATATCATCGTTTCCATCGAGGGCGATTCTTGCTTGCTACAAAAACTC
GTAAAATCACAACTTCGTTCCAAACGATACCTCCTTAAACTCACCGAGAT
CATCCCAGTTGTTCCATTATCTGACGGTTCGCAAAGCTACCGGTTACCAT
CTATGGAGGACAGTGACTCAGATACTGAAACTATTCATGAGTCTGAATTA
TCTACTCAACAACCTGTCGCTAATGAACAACCGCGTCGCCCTACGCGTAA
TCGCAACCAACCATTATGGATGCGATCTGGTGAATTTGAACTAGGTCATG
AAGAATCGGAGAATGAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028983-exon-sc0000717-1491911889:92727..93851 | TCONS_00028983-exon-sc0000717-1491911889:92727..93851 | Clytia hemisphaerica | exon |
| TCONS_00028983-exon-sc0000717-1510915933:92727..93851 | TCONS_00028983-exon-sc0000717-1510915933:92727..93851 | Clytia hemisphaerica | exon |
| TCONS_00028983-exon-sc0000717-1575043694:92727..93851 | TCONS_00028983-exon-sc0000717-1575043694:92727..93851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000717 | supercontig | sc0000717:92727..93851 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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