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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028984 ID=TCONS_00028984|Name=TCONS_00028984|organism=Clytia hemisphaerica|type=transcript|length=1071bp
TTgttaaataattcaaaaattcaatatGTACAAAATAGATTTAACTATTA
ACAGGTATAATTATAAAACAATAAATATATTGAATTTTGTACAactttgt
caaaaataactTAATTAAGAAAAACATGACCAAAAATTGACTACTACTAT
ATCAGACTACAAAATTTCCAATCAATTTAAAGTTCACACGTCACATGTGA
ACACAGCTTTACTTTAAGGATCTATAAACCTTTTCAGGATTTTGTTACAT
GTGTGGAATTGGCAGAAAATGATGCTCGATATTCGCTAAAAAACAGGCAA
AAACTGAAGAAACCGTAATCATAGGCATCCGCTGAATAtaaagaatacac
gtttttttataagaacaaactacagtCCCGAAGTGTTCTTCTGCTTGGTA
AAATTAACACTTTGGAATTCCGTAGCTCATCGTATGCCTTGACTGATTTT
GAGGCtaaagacaaacaaaaacgAATTAACATGGGATGGTAAACAAAGTT
TCCTTGGGctgacattttcttctgttcTTTCCAAAATAGCTTCATGAAGG
GTGATgaattttcttcattatttttcatgattctatTGATGTCCTTTGCC
ATCCCTGATGATACAGAAATCCCTTTTGTTTCCATTtcgttttgtaattt
ttcaaccTTCCCTGATAGTTCTTTGACTCTGGCTCTTTCCTTTACTAAGG
CTAAGATCACTTTGGCACGGTTAGTTCTTGATAGCGGTGCAAATTTAGAC
GCAGGAGTGATTTCTTTTTTaggtttcaaaacattttttttgacaCAACA
CTTACAAGCTGAGCAAATCTCTTCACTTTCAATCAAAGCCCCACATGCCA
AAGATCTGTAAAGGATTTTAGTAGGAACCTGATTTTCTTCGTCATATTTT
AGAGGAATGGCATGAATAACAGATTTTGGTGCAATAACAGAGGAAGAAAT
TCCATCACAAACATTGAATTTTAAGatacttttacaaaaatcatACAAAC
TGACTTTTCTAAGAGATCTCTTATGTCTTTTGTATAAATTGTGATCATCA
GGCAAGTACCATCCATAAANN Run BLAST on NCBI protein sequence of TCONS_00028984-protein >TCONS_00028984-protein ID=TCONS_00028984-protein|Name=TCONS_00028984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
XYGWYLPDDHNLYKRHKRSLRKVSLYDFCKSILKFNVCDGISSSVIAPKS
VIHAIPLKYDEENQVPTKILYRSLACGALIESEEICSACKCCVKKNVLKP
KKEITPASKFAPLSRTNRAKVILALVKERARVKELSGKVEKLQNEMETKG
ISVSSGMAKDINRIMKNNEENSSPFMKLFWKEQKKMSAQGNFVYHPMLIR
FCLSLASKSVKAYDELRNSKVLILPSRRTLRDCSLFL Run BLAST on NCBI transcript from alignment at sc0000717:136921..137991 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028984 ID=TCONS_00028984|Name=TCONS_00028984|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000717:136921..137991 (Clytia hemisphaerica)
NNTTTATGGATGGTACTTGCCTGATGATCACAATTTATACAAAAGACATA
AGAGATCTCTTAGAAAAGTCAGTTTGTatgatttttgtaaaagtatCTTA
AAATTCAATGTTTGTGATGGAATTTCTTCCTCTGTTATTGCACCAAAATC
TGTTATTCATGCCATTCCTCTAAAATATGACGAAGAAAATCAGGTTCCTA
CTAAAATCCTTTACAGATCTTTGGCATGTGGGGCTTTGATTGAAAGTGAA
GAGATTTGCTCAGCTTGTAAGTGTTGtgtcaaaaaaaatgttttgaaacc
tAAAAAAGAAATCACTCCTGCGTCTAAATTTGCACCGCTATCAAGAACTA
ACCGTGCCAAAGTGATCTTAGCCTTAGTAAAGGAAAGAGCCAGAGTCAAA
GAACTATCAGGGAAggttgaaaaattacaaaacgaAATGGAAACAAAAGG
GATTTCTGTATCATCAGGGATGGCAAAGGACATCAatagaatcatgaaaa
ataatgaagaaaattcATCACCCTTCATGAAGCTATTTTGGAAAgaacag
aagaaaatgtcagCCCAAGGAAACTTTGTTTACCATCCCATGTTAATTcg
tttttgtttgtctttaGCCTCAAAATCAGTCAAGGCATACGATGAGCTAC
GGAATTCCAAAGTGTTAATTTTACCAAGCAGAAGAACACTTCGGGactgt
agtttgttcttataaaaaaacgtgtattctttaTATTCAGCGGATGCCTA
TGATTACGGTTTCTTCAGTTTTTGCCTGTTTTTTAGCGAATATCGAGCAT
CATTTTCTGCCAATTCCACACATGTAACAAAATCCTGAAAAGGTTTATAG
ATCCTTAAAGTAAAGCTGTGTTCACATGTGACGTGTGAACTTTAAATTGA
TTGGAAATTTTGTAGTCTGATATAGTAGTAGTCAATTTTTGGTCATGTTT
TTCTTAATTAagttatttttgacaaagtTGTACAAAATTCAATATATTTA
TTGTTTTATAATTATACCTGTTAATAGTTAAATCTATTTTGTACatattg
aatttttgaattatttaacAA Coding sequence (CDS) from alignment at sc0000717:136921..137991 >TCONS_00028984 ID=TCONS_00028984|Name=TCONS_00028984|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000717:136921..137991 (Clytia hemisphaerica)
NTTTATGGATGGTACTTGCCTGATGATCACAATTTATACAAAAGACATAA
GAGATCTCTTAGAAAAGTCAGTTTGTatgatttttgtaaaagtatCTTAA
AATTCAATGTTTGTGATGGAATTTCTTCCTCTGTTATTGCACCAAAATCT
GTTATTCATGCCATTCCTCTAAAATATGACGAAGAAAATCAGGTTCCTAC
TAAAATCCTTTACAGATCTTTGGCATGTGGGGCTTTGATTGAAAGTGAAG
AGATTTGCTCAGCTTGTAAGTGTTGtgtcaaaaaaaatgttttgaaacct
AAAAAAGAAATCACTCCTGCGTCTAAATTTGCACCGCTATCAAGAACTAA
CCGTGCCAAAGTGATCTTAGCCTTAGTAAAGGAAAGAGCCAGAGTCAAAG
AACTATCAGGGAAggttgaaaaattacaaaacgaAATGGAAACAAAAGGG
ATTTCTGTATCATCAGGGATGGCAAAGGACATCAatagaatcatgaaaaa
taatgaagaaaattcATCACCCTTCATGAAGCTATTTTGGAAAgaacaga
agaaaatgtcagCCCAAGGAAACTTTGTTTACCATCCCATGTTAATTcgt
ttttgtttgtctttaGCCTCAAAATCAGTCAAGGCATACGATGAGCTACG
GAATTCCAAAGTGTTAATTTTACCAAGCAGAAGAACACTTCGGGactgta
gtttgttcttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028984-exon-sc0000717-1491911889:136921..137991 | TCONS_00028984-exon-sc0000717-1491911889:136921..137991 | Clytia hemisphaerica | exon |
| TCONS_00028984-exon-sc0000717-1510915933:136921..137991 | TCONS_00028984-exon-sc0000717-1510915933:136921..137991 | Clytia hemisphaerica | exon |
| TCONS_00028984-exon-sc0000717-1575043694:136921..137991 | TCONS_00028984-exon-sc0000717-1575043694:136921..137991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000717 | supercontig | sc0000717:136921..137991 . |
Blast
The following BLAST results are available for this feature:
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