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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028992 ID=TCONS_00028992|Name=TCONS_00028992|organism=Clytia hemisphaerica|type=transcript|length=1021bp
CGTACAGAAAAAGATGTAAATGTggttaaagaatttcaaaagaCTAAATT
TTCTATAGCCAAAGATCCAAATATGGTAGCAATTCATGACCATCTTACAT
CTTATTCTGCTGACTTCGTTTGCAACGAGCTAGCTGCTTTCCCAAAAACG
TCGGAGCGTAAGAGCACTATCGACTCGTGTGATTGCCCATGTCAATGCAG
CTTCCATGCAGGCATATTTTCAAATCGCGCTCTTTGAAAGGATGTACACC
GATCTTTGCGAGTTTCGTTGGTCAAGAGCATATCTTCATCAAAGTCAGCG
GCTTTTTTTGGAATCGCACCTTAAAAGAACGCAAGCGATCGAAATTTCGT
CGCCCGATGGCTGTCATGAACCAAGTTGAACGATGTAGGAGTGCCAACGG
TGTATGTCAAAACCTTTCAAAATTGGCGTCGGAGGCAGGGGGTTCTGCTT
TCGTCGAAAGGATGAGACTTCTACAAAAGCTGGAAGATCTGTGGCGAGAC
GGAAAAGAGGCTCGCCTAATCTTTCCTCCAGATCGTGTCGAATCAGAAGT
ACATCTAAGAAACGAAACCTCAACTGGTCCTGATCTTCCAGATCGTGTCG
AATCAGAAGTACATCCAAGAAACGAAACCTCAACTGGTGCTGATCCACAA
TTCAAACATGAAAACACAATTGACGTGAGACATTTGAAGATGCCTTCAAG
AATAAAACCCAAAGGCCAAAAGGCTACACCAAGACAGTTATcggaaaaaa
tagaaaacgaaAGAATGATTCCAAAAGTAAAACTGACAGCTCCCCCAAAG
TCCCGAAAATTCAACTTGAGAGCTCAAACGATAAaagaaaaatgctgaaa
aatgtgGAAAAGTCACAGCCCAAGGACTCAAACATCAATGGCACTATTAT
TGGTAACCCTGATAAGTTAGCGGATCAGCTCTGGTAAGTAAAAAATGGGT
aaaattgacgatttttgaaagtCGTATCCAACGGAAACGATCGATACCAT
CGGATAGAGcgtgaaattctg Run BLAST on NCBI protein sequence of TCONS_00028992-protein >TCONS_00028992-protein ID=TCONS_00028992-protein|Name=TCONS_00028992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MSMQLPCRHIFKSRSLKGCTPIFASFVGQEHIFIKVSGFFWNRTLKERKR
SKFRRPMAVMNQVERCRSANGVCQNLSKLASEAGGSAFVERMRLLQKLED
LWRDGKEARLIFPPDRVESEVHLRNETSTGPDLPDRVESEVHPRNETSTG
ADPQFKHENTIDVRHLKMPSRIKPKGQKATPRQLSEKIENERMIPKVKLT
APPKSRKFNLRAQTIKEKC Run BLAST on NCBI transcript from alignment at sc0000719:55317..57763+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028992 ID=TCONS_00028992|Name=TCONS_00028992|organism=Clytia hemisphaerica|type=transcript|length=2447bp|location=Sequence derived from alignment at sc0000719:55317..57763+ (Clytia hemisphaerica)
CGTACAGAAAAAGATGTAAATGTggttaaagaatttcaaaagaCTAAATT
TTCTATAGCCAAAGATCCAAATATGGTAGCAATTCATGACCATCTTACAT
CTTATTCTGCTGACTTCGTTTGCAACGAGCTAGCTGCTTTCCCAAAAACG
TCGGAGCGTAAGAGCACTATCGACTCGTGTGATTGCCCATGTCAATGCAG
CTTCCATGCAGGCATATTTTCAAATCGCGCTCTTTGAAAGGATGTACACC
GATCTTTGCGAGTTTCGTTGGTCAAGAGCATATCTTCATCAAAGTCAGCG
GCTTTTTTTGGAATCGCACCTTAAAAGAACGCAAGCGATCGAAATTTCGT
CGCCCGATGGCTGTCATGAACCAAGTTGAACGATGTAGGAGTGCCAACGG
TGTATGTCAAAACCTTTCAAAATTGGCGTCGGAGGCAGGGGGTTCTGCTT
TCGTCGAAAGGATGAGACTTCTACAAAAGCTGGAAGATCTGTGGCGAGAC
GGAAAAGAGGCTCGCCTAATCTTTCCTCCAGATCGTGTCGAATCAGAAGT
ACATCTAAGAAACGAAACCTCAACTGGTCCTGATCTTCCAGATCGTGTCG
AATCAGAAGTACATCCAAGAAACGAAACCTCAACTGGTGCTGATCCACAA
TTCAAACATGAAAACACAATTGACGTGAGACATTTGAAGATGCCTTCAAG
AATAAAACCCAAAGGCCAAAAGGCTACACCAAGACAGTTATcggaaaaaa
tagaaaacgaaAGAATGGTAAATTTAGTTGCATAGTAAACGAACCCATCC
CtcttcattaatttttatttttatatttatttaagaAATTTCAGCAGTGC
ATTTTCCAACTACCTGACAACAAGGAGAGCTTCCTGCTCAAGAATAATTA
CTTGTTAACCAGTCACCTTTTGCGATTAAGGATGGTTGATATACACTTTT
ATCTGAAacccaaattttcaaatcattgaTGAATTTGCTTAGGATTATCA
GGAATTCGACCTAAAGTTCCTAGTAATGCATGCCTATGGATTTTGAGCCA
ACAATGGCTGCAAGTTATCCAAAATTTAGACTTTTTACCTCGATTCTTGC
AATTATTTTTCTACGTTTTTAGATTCCAAAAGTAAAACTGACAGCTCCCC
CAAAGTCCCGAAAATTCAACTTGAGGTAAATCAAATGTTATCTTTATAGT
ACTTATGGCCTTCCTTTCTACCCGAACAACGTTTGCTTTAAGGATCCTTC
GAATATGTTGCGTGCCCTATTTCCTCCATTAAGCACCGCCCTATTTTAAC
AGCCGCCCTCTTATAATCACTGACCTCCAAAAACCGCCACTTATCAAACG
GTGCTTATTAGAAAATGATTgggaaatgatgaaatttttagtCATATCTC
TAATATCCGTCTCCAAAGTAAATTTACAAATTAATCTCATTACACCTTGA
CAGTAAAGATATGGTATGAAAAACCACCCATGTCAGACTGCAAAATCCAC
GATTCAATCAAATTGCACGTTAGGggcaaaattttccaattcagAAATAA
GCTATTAAGCGACGCCCTCTAATAAGCACCGCAcataaaatcatgaaaat
ttaataagcgCCACTGCGTAGGGGAAATACAGTATAGTTGTTGGGTAACA
TACAGCATACCAAACGTGATGCAATCAGGATTAGTTTTGAGATTATAGAT
GAAAATAgactgaaaatttttccaattttcatggGAAGTAgtctaattac
aaaaaatattgtttccaCATGTTAGCAAAAAGAGAGTGGATTTTAGTTTT
AGAATTAAGATGGAGACAGTTGAAAAAGAATTACATGGTGTTCTTACTTT
TCTTTTGCAGAGCTCAAACGATAAaagaaaaatgctgaaaaatgtgGAAA
AGTCACAGCCCAAGGTACTAAATCGTTCTTTTTGACCTTTTCCTCTCATT
GTACTAACGGTATCTTTTCCGCAGCTTTTTTCGGATAGAAGCTTCAAATT
TAAAATGGAGACAGTTGAAAAAGAATTACATGGTGTTCTTACTTTTCTTT
AGCAGAGCtcaaatgataaaagaaaaatgctgaaaaatgtgGAAATGTCA
CAGCCCAAGGTAGTAAATCGttctttttgacctttttctcTCATTGTACT
AACGGTATCTTTTTCGAAGCTTGTGCTCCTATTATTGCcaagaatttata
aaaattaccTATTTTAAAATGAAGTTCACAGGGTCAAGAAAATAAAAGGA
ATTTTCTACATCTTCCAAAGATATCTCGAAATCACTCGTTCCTTTTGTAG
GACTCAAACATCAATGGCACTATTATTGGTAACCCTGATAAGTTAGCGGA
TCAGCTCTGGTAAGTAAAAAATGGGTaaaattgacgatttttgaaagtCG
TATCCAACGGAAACGATCGATACCATCGGATAGAGcgtgaaattctg Coding sequence (CDS) from alignment at sc0000719:55317..57763+ >TCONS_00028992 ID=TCONS_00028992|Name=TCONS_00028992|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at sc0000719:55317..57763+ (Clytia hemisphaerica)
ATGTCAATGCAGCTTCCATGCAGGCATATTTTCAAATCGCGCTCTTTGAA
AGGATGTACACCGATCTTTGCGAGTTTCGTTGGTCAAGAGCATATCTTCA
TCAAAGTCAGCGGCTTTTTTTGGAATCGCACCTTAAAAGAACGCAAGCGA
TCGAAATTTCGTCGCCCGATGGCTGTCATGAACCAAGTTGAACGATGTAG
GAGTGCCAACGGTGTATGTCAAAACCTTTCAAAATTGGCGTCGGAGGCAG
GGGGTTCTGCTTTCGTCGAAAGGATGAGACTTCTACAAAAGCTGGAAGAT
CTGTGGCGAGACGGAAAAGAGGCTCGCCTAATCTTTCCTCCAGATCGTGT
CGAATCAGAAGTACATCTAAGAAACGAAACCTCAACTGGTCCTGATCTTC
CAGATCGTGTCGAATCAGAAGTACATCCAAGAAACGAAACCTCAACTGGT
GCTGATCCACAATTCAAACATGAAAACACAATTGACGTGAGACATTTGAA
GATGCCTTCAAGAATAAAACCCAAAGGCCAAAAGGCTACACCAAGACAGT
TATcggaaaaaatagaaaacgaaAGAATGATTCCAAAAGTAAAACTGACA
GCTCCCCCAAAGTCCCGAAAATTCAACTTGAGAGCTCAAACGATAAaaga
aaaatgctgaATGTCAATGCAGCTTCCATGCAGGCATATTTTCAAATCGC
GCTCTTTGAAAGGATGTACACCGATCTTTGCGAGTTTCGTTGGTCAAGAG
CATATCTTCATCAAAGTCAGCGGCTTTTTTTGGAATCGCACCTTAAAAGA
ACGCAAGCGATCGAAATTTCGTCGCCCGATGGCTGTCATGAACCAAGTTG
AACGATGTAGGAGTGCCAACGGTGTATGTCAAAACCTTTCAAAATTGGCG
TCGGAGGCAGGGGGTTCTGCTTTCGTCGAAAGGATGAGACTTCTACAAAA
GCTGGAAGATCTGTGGCGAGACGGAAAAGAGGCTCGCCTAATCTTTCCTC
CAGATCGTGTCGAATCAGAAGTACATCTAAGAAACGAAACCTCAACTGGT
CCTGATCTTCCAGATCGTGTCGAATCAGAAGTACATCCAAGAAACGAAAC
CTCAACTGGTGCTGATCCACAATTCAAACATGAAAACACAATTGACGTGA
GACATTTGAAGATGCCTTCAAGAATAAAACCCAAAGGCCAAAAGGCTACA
CCAAGACAGTTATcggaaaaaatagaaaacgaaAGAATGATTCCAAAAGT
AAAACTGACAGCTCCCCCAAAGTCCCGAAAATTCAACTTGAGAGCTCAAA
CGATAAaagaaaaatgctgaATGTCAATGCAGCTTCCATGCAGGCATATT
TTCAAATCGCGCTCTTTGAAAGGATGTACACCGATCTTTGCGAGTTTCGT
TGGTCAAGAGCATATCTTCATCAAAGTCAGCGGCTTTTTTTGGAATCGCA
CCTTAAAAGAACGCAAGCGATCGAAATTTCGTCGCCCGATGGCTGTCATG
AACCAAGTTGAACGATGTAGGAGTGCCAACGGTGTATGTCAAAACCTTTC
AAAATTGGCGTCGGAGGCAGGGGGTTCTGCTTTCGTCGAAAGGATGAGAC
TTCTACAAAAGCTGGAAGATCTGTGGCGAGACGGAAAAGAGGCTCGCCTA
ATCTTTCCTCCAGATCGTGTCGAATCAGAAGTACATCTAAGAAACGAAAC
CTCAACTGGTCCTGATCTTCCAGATCGTGTCGAATCAGAAGTACATCCAA
GAAACGAAACCTCAACTGGTGCTGATCCACAATTCAAACATGAAAACACA
ATTGACGTGAGACATTTGAAGATGCCTTCAAGAATAAAACCCAAAGGCCA
AAAGGCTACACCAAGACAGTTATcggaaaaaatagaaaacgaaAGAATGA
TTCCAAAAGTAAAACTGACAGCTCCCCCAAAGTCCCGAAAATTCAACTTG
AGAGCTCAAACGATAAaagaaaaatgctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028992-exon-sc0000719-1491911889:55317..56083 | TCONS_00028992-exon-sc0000719-1491911889:55317..56083 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1510915933:55317..56083 | TCONS_00028992-exon-sc0000719-1510915933:55317..56083 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1575043694:55317..56083 | TCONS_00028992-exon-sc0000719-1575043694:55317..56083 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1491911889:56439..56491 | TCONS_00028992-exon-sc0000719-1491911889:56439..56491 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1510915933:56439..56491 | TCONS_00028992-exon-sc0000719-1510915933:56439..56491 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1575043694:56439..56491 | TCONS_00028992-exon-sc0000719-1575043694:56439..56491 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1491911889:57177..57230 | TCONS_00028992-exon-sc0000719-1491911889:57177..57230 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1510915933:57177..57230 | TCONS_00028992-exon-sc0000719-1510915933:57177..57230 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1575043694:57177..57230 | TCONS_00028992-exon-sc0000719-1575043694:57177..57230 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1491911889:57617..57763 | TCONS_00028992-exon-sc0000719-1491911889:57617..57763 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1510915933:57617..57763 | TCONS_00028992-exon-sc0000719-1510915933:57617..57763 | Clytia hemisphaerica | exon |
| TCONS_00028992-exon-sc0000719-1575043694:57617..57763 | TCONS_00028992-exon-sc0000719-1575043694:57617..57763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000719 | supercontig | sc0000719:55317..57763 + |
Blast
The following BLAST results are available for this feature:
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