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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029000 ID=TCONS_00029000|Name=TCONS_00029000|organism=Clytia hemisphaerica|type=transcript|length=1087bp
CAGCTTCTTTCTTGCTAGGCATGAATGATCGACATTACCATTTTCCACTA
GACCAATGTTTCGTTCCGAGCAAAACTTTCTCAATTCTTTATTTTTCTCA
CCAACTTTAGTGAATCTGCCACCAACATCAGTTCTCAAACAAAGCTCAGA
GAAACAAATTTGTGTTTCCGGACTAATTTCTCGAACTGTTTCAATAATGG
TTTGAAGGTTATCCGTTGTGTCATTAATTCCTTTGGTTATGTCATTTGTC
CCAACGTGTATGATGATTTTATTCGGCTTTTTCCGTGCGGTAGGTCGTAC
ATAGTCTATCATATCTTTAGAGGTAGAACCAGAAAAACTTTTTACCACGG
TACAAAAGTCTTTCGAAGACACGCCATCCCCATCCACTCCGTTCACAATA
CTGTCACCACAAATATACACCATTTCTCTCTTTTTCTGTTCAAGTTTTAT
ATCATCAATATCAGATCTCTTAGGAGGGTTGTTTTCATTAACTTTCTCTT
TCTCTCTCTGAAAACCATTTACACTTGTATCAAGGCTATGATGATGACTA
ATTGATTTCCCATTAAGATTTTCTTTGTCATTTCTGATAGTAACTTTTTC
GTTGTTAATAACATCCCTTTTTGCATCACACGTCGACTTAATAGGATGAT
GTGTaacattttcacaatttttgcgaaaaaaagaaatgttttgatgAGTA
TTACAGCCTTGTAAAAGAGAGTCTATGAGATTATTCTTTCTACGAATTTc
ttcttcataaaaaatgatttgattttccaaaatatttatcattttatcct
TACATTTAATAAAACCAGATGTATCCTCGTTCCCCTGCTGTGGTTTGGAT
CCTGAACTCTTCTTGATTTCATCACATATGAACGCTTTAAGATTGTCTGA
AGCCTTTTTCACCTCAGATTCAACATACATTTGGTCAATAAAATCCATAG
TGCTCTTAATGTCATCACTACAAGACTCATTCAATTCTCCTTCTTTCACA
AGTTCAATGTGTGATTGATTcataagtttttttaaaatgatttccTCAAA
GTTGATTTTCATGCGACCGTCTGCCATGATGCCACTC Run BLAST on NCBI protein sequence of TCONS_00029000-protein >TCONS_00029000-protein ID=TCONS_00029000-protein|Name=TCONS_00029000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
SGIMADGRMKINFEEIILKKLMNQSHIELVKEGELNESCSDDIKSTMDFI
DQMYVESEVKKASDNLKAFICDEIKKSSGSKPQQGNEDTSGFIKCKDKMI
NILENQIIFYEEEIRRKNNLIDSLLQGCNTHQNISFFRKNCENVTHHPIK
STCDAKRDVINNEKVTIRNDKENLNGKSISHHHSLDTSVNGFQREKEKVN
ENNPPKRSDIDDIKLEQKKREMVYICGDSIVNGVDGDGVSSKDFCTVVKS
FSGSTSKDMIDYVRPTARKKPNKIIIHVGTNDITKGINDTTDNLQTIIET
VREISPETQICFSELCLRTDVGGRFTKVGEKNKELRKFCSERNIGLVENG
NVDHSCLARKKL Run BLAST on NCBI transcript from alignment at sc0000719:38806..39892 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029000 ID=TCONS_00029000|Name=TCONS_00029000|organism=Clytia hemisphaerica|type=transcript|length=1087bp|location=Sequence derived from alignment at sc0000719:38806..39892 (Clytia hemisphaerica)
GAGTGGCATCATGGCAGACGGTCGCATGAAAATCAACTTTGAggaaatca
ttttaaaaaaacttatgAATCAATCACACATTGAACTTGTGAAAGAAGGA
GAATTGAATGAGTCTTGTAGTGATGACATTAAGAGCACTATGGATTTTAT
TGACCAAATGTATGTTGAATCTGAGGTGAAAAAGGCTTCAGACAATCTTA
AAGCGTTCATATGTGATGAAATCAAGAAGAGTTCAGGATCCAAACCACAG
CAGGGGAACGAGGATACATCTGGTTTTATTAAATGTAaggataaaatgat
aaatattttggaaaatcaaatcattttttatgaagaagAAATTCGTAGAA
AGAATAATCTCATAGACTCTCTTTTACAAGGCTGTAATACTcatcaaaac
atttctttttttcgcaaaaattgtgaaaatgttACACATCATCCTATTAA
GTCGACGTGTGATGCAAAAAGGGATGTTATTAACAACGAAAAAGTTACTA
TCAGAAATGACAAAGAAAATCTTAATGGGAAATCAATTAGTCATCATCAT
AGCCTTGATACAAGTGTAAATGGTTTTCAGAGAGAGAAAGAGAAAGTTAA
TGAAAACAACCCTCCTAAGAGATCTGATATTGATGATATAAAACTTGAAC
AGAAAAAGAGAGAAATGGTGTATATTTGTGGTGACAGTATTGTGAACGGA
GTGGATGGGGATGGCGTGTCTTCGAAAGACTTTTGTACCGTGGTAAAAAG
TTTTTCTGGTTCTACCTCTAAAGATATGATAGACTATGTACGACCTACCG
CACGGAAAAAGCCGAATAAAATCATCATACACGTTGGGACAAATGACATA
ACCAAAGGAATTAATGACACAACGGATAACCTTCAAACCATTATTGAAAC
AGTTCGAGAAATTAGTCCGGAAACACAAATTTGTTTCTCTGAGCTTTGTT
TGAGAACTGATGTTGGTGGCAGATTCACTAAAGTTGGTGAGAAAAATAAA
GAATTGAGAAAGTTTTGCTCGGAACGAAACATTGGTCTAGTGGAAAATGG
TAATGTCGATCATTCATGCCTAGCAAGAAAGAAGCTG Coding sequence (CDS) from alignment at sc0000719:38806..39892 >TCONS_00029000 ID=TCONS_00029000|Name=TCONS_00029000|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at sc0000719:38806..39892 (Clytia hemisphaerica)
AGTGGCATCATGGCAGACGGTCGCATGAAAATCAACTTTGAggaaatcat
tttaaaaaaacttatgAATCAATCACACATTGAACTTGTGAAAGAAGGAG
AATTGAATGAGTCTTGTAGTGATGACATTAAGAGCACTATGGATTTTATT
GACCAAATGTATGTTGAATCTGAGGTGAAAAAGGCTTCAGACAATCTTAA
AGCGTTCATATGTGATGAAATCAAGAAGAGTTCAGGATCCAAACCACAGC
AGGGGAACGAGGATACATCTGGTTTTATTAAATGTAaggataaaatgata
aatattttggaaaatcaaatcattttttatgaagaagAAATTCGTAGAAA
GAATAATCTCATAGACTCTCTTTTACAAGGCTGTAATACTcatcaaaaca
tttctttttttcgcaaaaattgtgaaaatgttACACATCATCCTATTAAG
TCGACGTGTGATGCAAAAAGGGATGTTATTAACAACGAAAAAGTTACTAT
CAGAAATGACAAAGAAAATCTTAATGGGAAATCAATTAGTCATCATCATA
GCCTTGATACAAGTGTAAATGGTTTTCAGAGAGAGAAAGAGAAAGTTAAT
GAAAACAACCCTCCTAAGAGATCTGATATTGATGATATAAAACTTGAACA
GAAAAAGAGAGAAATGGTGTATATTTGTGGTGACAGTATTGTGAACGGAG
TGGATGGGGATGGCGTGTCTTCGAAAGACTTTTGTACCGTGGTAAAAAGT
TTTTCTGGTTCTACCTCTAAAGATATGATAGACTATGTACGACCTACCGC
ACGGAAAAAGCCGAATAAAATCATCATACACGTTGGGACAAATGACATAA
CCAAAGGAATTAATGACACAACGGATAACCTTCAAACCATTATTGAAACA
GTTCGAGAAATTAGTCCGGAAACACAAATTTGTTTCTCTGAGCTTTGTTT
GAGAACTGATGTTGGTGGCAGATTCACTAAAGTTGGTGAGAAAAATAAAG
AATTGAGAAAGTTTTGCTCGGAACGAAACATTGGTCTAGTGGAAAATGGT
AATGTCGATCATTCATGCCTAGCAAGAAAGAAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029000-exon-sc0000719-1491911889:38806..39892 | TCONS_00029000-exon-sc0000719-1491911889:38806..39892 | Clytia hemisphaerica | exon |
| TCONS_00029000-exon-sc0000719-1510915933:38806..39892 | TCONS_00029000-exon-sc0000719-1510915933:38806..39892 | Clytia hemisphaerica | exon |
| TCONS_00029000-exon-sc0000719-1575043694:38806..39892 | TCONS_00029000-exon-sc0000719-1575043694:38806..39892 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000719 | supercontig | sc0000719:38806..39892 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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