TCONS_00029036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029036
Unique NameTCONS_00029036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029036 ID=TCONS_00029036|Name=TCONS_00029036|organism=Clytia hemisphaerica|type=transcript|length=470bp
TAGACCATGTGAGTATTGTTGAAACTAAGATACAGAGAAATCGGATAAAA
AAAGACAGACTGGTCATTTTGACGGAACCTATCAGTGCAGGTATGATTAT
GAACCGTCAAGTTTTGAATCTCGAGCTCGACATTATTCGGGACCAAAGTG
AAAATTGGTATGATTGCTGTCTATCTTATCTAGAGATCTCCTAATAGCGT
TACCAATCCATATTAGCTCGTTCCTCTCCTTGTCTAGAAAACGACAACCG
ATTCCGTCTACTAAAGCCGTTTCTAAGTCAAATTCCTGCTTGGAGAGGGA
AATCCTtagatttgaaaattgaaaactcTTTGGTTcaacatttaaaaaag
atttttttgaattttttagaagGGTATTTTAAACCCAGTTTATTTATGAG
AAAACatgtaaatattttcaaaaacatttttagcaAGATTTTATTTGTCA
ACGTTTCAATTACCTTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000720:148153..148622

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029036 ID=TCONS_00029036|Name=TCONS_00029036|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0000720:148153..148622 (Clytia hemisphaerica)
CAAAAAGGTAATTGAAACGTTGACAAATAAAATCTtgctaaaaatgtttt
tgaaaatatttacatGTTTTCTCATAAATAAACTGGGTTTAAAATACCct
tctaaaaaattcaaaaaaatcttttttaaatgttgAACCAAAgagttttc
aattttcaaatctaAGGATTTCCCTCTCCAAGCAGGAATTTGACTTAGAA
ACGGCTTTAGTAGACGGAATCGGTTGTCGTTTTCTAGACAAGGAGAGGAA
CGAGCTAATATGGATTGGTAACGCTATTAGGAGATCTCTAGATAAGATAG
ACAGCAATCATACCAATTTTCACTTTGGTCCCGAATAATGTCGAGCTCGA
GATTCAAAACTTGACGGTTCATAATCATACCTGCACTGATAGGTTCCGTC
AAAATGACCAGTCTGTCTTTTTTTATCCGATTTCTCTGTATCTTAGTTTC
AACAATACTCACATGGTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016509XLOC_016509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029036-exon-sc0000720-1491911889:148153..148622TCONS_00029036-exon-sc0000720-1491911889:148153..148622Clytia hemisphaericaexon
TCONS_00029036-exon-sc0000720-1510915933:148153..148622TCONS_00029036-exon-sc0000720-1510915933:148153..148622Clytia hemisphaericaexon
TCONS_00029036-exon-sc0000720-1575043694:148153..148622TCONS_00029036-exon-sc0000720-1575043694:148153..148622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000720supercontigsc0000720:148153..148622 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27186	0.530213	0.461721	0	46.0106	35.7788	7.16514	9.16203	1.83273	2.69578	0.826292	0.543172	1.62725	1.7838	0.385928	0.745487	0.612253	1.46426	1.87846	0.756027	0.394275	0.384627	0.311709	0.141695	0.291884	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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