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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029038 ID=TCONS_00029038|Name=TCONS_00029038|organism=Clytia hemisphaerica|type=transcript|length=2200bp
CACGGTCCACTTTTCCTTTCCTCAGGAAGGTTCATTATAGTCGTAACGCt
gcaataaaatacctttggcCTTGCACAATTTGTAAAGGGATTCTAAATAG
TAATTCCCATGATGCGAAGGTGCATTGTCTGATTTAGCATAAAGTTGACA
CATGTTTGGAAAGTCCTTCTTTGCCTTTTCCAAAACAACATCTGCTAGAC
AAAGTGAGTCAACTAGGGCTTGTTCACAGCGATAGACTGTTGTAAAATAC
AGTATACGTTCTTCATCAACTTTTtttcctatctttaaagaaaaaaacat
cgaCATCGACAAGAGTTATACCCTTCTTGCCAAAGTATTCTTTCTGGCCT
TCTCTGAAACGAGCTGGTAAAATCTTTTGGCAGAAGTCTATTAGCCAAAA
CCCTGTTTCAGGTGATTATTGGTCAAATGCCAttatctttgttaattttt
gctGAGCATCTCTAATTTGTTGTTTCATATATGCTTCAATATCTGCAATT
GCAACATTAGCGTCGTATTGGAGGTCTCCATCGTTAGTTTCTTTGACAAG
GTCCCGAATCTGGTTCAAAACTGAGTGAAGTTCAGTGCAATCAGCACATT
CTTCTTTACTGATTTTTGCGCATGTGTTCAAATCTGGATCATCTTTGCAA
CTTAAAGCGAACCAAGTTGAGTGAgaagaaagttttgaagtttCTGAACA
TTTGACAGGGTAATTTGATTTGAGATATCTCTTTCCTTTTTCAAATGATT
TACAAATATcattttgctttattttctCAGCAATATCGGTCAGGACTTTA
AAACCATTCATTCCAGCAGTAGTAACATCATTTAGTCCAGCTAAAGCTTT
TCTTTGTGAAGGATGATTCCATATATAACACTCTCCACAAAGACGAGTCA
GAAATAGGAGAATATCCAGTTTCTTTACACGTCTCCTTGTAAAAGTGAAT
AGTATGACTATACTTCATCGTTAAAATAGAATTAGCAATATTATGTACAT
TCCCGTTGTCAAACTGAATTTTTTAGTCCTCTTGTGAAAAGGGAATCTAA
ACAATGTTCAATCTTATCCTGGAGAATTCGTGAACGAGTGATTTTCTCAG
CTTTAGATGGCAGTTTTAAACCAGTATTCTCATTATTCAGTTTTTGTGCT
TGATCTATTTGGTGCTTTTTACAACCAACAAATCTCGTTAATTCATCTTT
GGTATGCTTATCATGGTTAACAACAGATACTATTATCTGTTCAAATGAAT
CACTTTTCCTGAACAAGTTTACCAAAACAATCAAATCTGCCGGAACAGAT
TCACTTTCCTCACTTTCATTATTATTCTCCGGAAGGAatgttcgaaaaaa
aattcagtggatgtttttttcattattctgagcaaaatatccaaaaatga
tgaaaatctaAAGACATCACTTTCTTACTTTGCCCGGATCTCtcaaaaaa
tggctcttaagtcCAATTCTACTTTTCAATTTCCCCATTGCTTTTGTATG
CTCTTCATCTTTCTTTTTAACTTCCACTTCATTAAGTTCCTTTATTGTGT
TTCTCAAAGCTTCGTTTCCATTTGGTTGTCCAGTCATGACCAAGAAAAAA
TGTTCTCTTTAACCAACTCCGCACAAGGTGCGTTGTATAATAATGCAAGA
AGCGAgtgatttcaaattcaaaacacaCACGTTTTTGGTACATTTTTGGT
ACGAGAATTTGGTCGAATTCACGCTGTTTCTTCGAGCTTTTCTTTGcctt
ttttctttcatattaTTTTCTATCAGATTTCTTCTGTTTTTTAGCTTGGT
CTGGCTGGTGAGGAGTTTTTAGAGagcaaatttttaaaatgttctttatc
aaatattacaaaatcaaaatgcAAAGCAAAGGTGATACTTTTTGGTGTAA
AATGGGCCGTTAGAGTGTACGAATGAAAAGGGAACGCGCCCCGCCCAAAT
TATCCTAAGCGCTGATAATAAGGTGTATAAGGTGTATAACGAGTCGTGGC
TCTAAAAAAATGATTTCTGGAATTTTTACCTCTTAATACCTTGTTCTATC
GGGGAATCCAACTTAATTTTTAAGTTAGACATTTTCGTTTTAGCATTTAT
TATCCCCTAATTATACGAAATTTACTGTAGTTTGTTAATTTTCTGTAATT
TCTGGGTTTTTCCTAGAAACTTTATTTTGTTGTATGtttgtaaattttat Run BLAST on NCBI protein sequence of TCONS_00029038-protein >TCONS_00029038-protein ID=TCONS_00029038-protein|Name=TCONS_00029038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNGFKVLTDIAEKIKQNDICKSFEKGKRYLKSNYPVKCSETSKLSSHSTW
FALSCKDDPDLNTCAKISKEECADCTELHSVLNQIRDLVKETNDGDLQYD
ANVAIADIEAYMKQQIRDAQQKLTKIMAFDQ Run BLAST on NCBI transcript from alignment at sc0000720:169594..171793 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029038 ID=TCONS_00029038|Name=TCONS_00029038|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at sc0000720:169594..171793 (Clytia hemisphaerica)
ataaaatttacaaaCATACAACAAAATAAAGTTTCTAGGAAAAACCCAGA
AATTACAGAAAATTAACAAACTACAGTAAATTTCGTATAATTAGGGGATA
ATAAATGCTAAAACGAAAATGTCTAACTTAAAAATTAAGTTGGATTCCCC
GATAGAACAAGGTATTAAGAGGTAAAAATTCCAGAAATCATTTTTTTAGA
GCCACGACTCGTTATACACCTTATACACCTTATTATCAGCGCTTAGGATA
ATTTGGGCGGGGCGCGTTCCCTTTTCATTCGTACACTCTAACGGCCCATT
TTACACCAAAAAGTATCACCTTTGCTTTgcattttgattttgtaatattt
gataaagaacattttaaaaatttgctCTCTAAAAACTCCTCACCAGCCAG
ACCAAGCTAAAAAACAGAAGAAATCTGATAGAAAAtaatatgaaagaaaa
aaggCAAAGAAAAGCTCGAAGAAACAGCGTGAATTCGACCAAATTCTCGT
ACCAAAAATGTACCAAAAACGTGtgtgttttgaatttgaaatcacTCGCT
TCTTGCATTATTATACAACGCACCTTGTGCGGAGTTGGTTAAAGAGAACA
TTTTTTCTTGGTCATGACTGGACAACCAAATGGAAACGAAGCTTTGAGAA
ACACAATAAAGGAACTTAATGAAGTGGAAGTTAAAAAGAAAGATGAAGAG
CATACAAAAGCAATGGGGAAATTGAAAAGTAGAATTGgacttaagagcca
ttttttgaGAGATCCGGGCAAAGTAAGAAAGTGATGTCTTtagattttca
tcatttttggatattttgctcagaataatgaaaaaaacatccactgaatt
ttttttcgaacatTCCTTCCGGAGAATAATAATGAAAGTGAGGAAAGTGA
ATCTGTTCCGGCAGATTTGATTGTTTTGGTAAACTTGTTCAGGAAAAGTG
ATTCATTTGAACAGATAATAGTATCTGTTGTTAACCATGATAAGCATACC
AAAGATGAATTAACGAGATTTGTTGGTTGTAAAAAGCACCAAATAGATCA
AGCACAAAAACTGAATAATGAGAATACTGGTTTAAAACTGCCATCTAAAG
CTGAGAAAATCACTCGTTCACGAATTCTCCAGGATAAGATTGAACATTGT
TTAGATTCCCTTTTCACAAGAGGACTAAAAAATTCAGTTTGACAACGGGA
ATGTACATAATATTGCTAATTCTATTTTAACGATGAAGTATAGTCATACT
ATTCACTTTTACAAGGAGACGTGTAAAGAAACTGGATATTCTCCTATTTC
TGACTCGTCTTTGTGGAGAGTGTTATATATGGAATCATCCTTCACAAAGA
AAAGCTTTAGCTGGACTAAATGATGTTACTACTGCTGGAATGAATGGTTT
TAAAGTCCTGACCGATATTGCTGagaaaataaagcaaaatgATATTTGTA
AATCATTTGAAAAAGGAAAGAGATATCTCAAATCAAATTACCCTGTCAAA
TGTTCAGaaacttcaaaactttcttcTCACTCAACTTGGTTCGCTTTAAG
TTGCAAAGATGATCCAGATTTGAACACATGCGCAAAAATCAGTAAAGAAG
AATGTGCTGATTGCACTGAACTTCACTCAGTTTTGAACCAGATTCGGGAC
CTTGTCAAAGAAACTAACGATGGAGACCTCCAATACGACGCTAATGTTGC
AATTGCAGATATTGAAGCATATATGAAACAACAAATTAGAGATGCTCagc
aaaaattaacaaagataaTGGCATTTGACCAATAATCACCTGAAACAGGG
TTTTGGCTAATAGACTTCTGCCAAAAGATTTTACCAGCTCGTTTCAGAGA
AGGCCAGAAAGAATACTTTGGCAAGAAGGGTATAACTCTTGTCGATGtcg
atgtttttttctttaaagataggaaaAAAAGTTGATGAAGAACGTATACT
GTATTTTACAACAGTCTATCGCTGTGAACAAGCCCTAGTTGACTCACTTT
GTCTAGCAGATGTTGTTTTGGAAAAGGCAAAGAAGGACTTTCCAAACATG
TGTCAACTTTATGCTAAATCAGACAATGCACCTTCGCATCATGGGAATTA
CTATTTAGAATCCCTTTACAAATTGTGCAAGgccaaaggtattttattgc
aGCGTTACGACTATAATGAACCTTCCTGAGGAAAGGAAAAGTGGACCGTG
Coding sequence (CDS) from alignment at sc0000720:169594..171793 >TCONS_00029038 ID=TCONS_00029038|Name=TCONS_00029038|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000720:169594..171793 (Clytia hemisphaerica)
ATGAATGGTTTTAAAGTCCTGACCGATATTGCTGagaaaataaagcaaaa
tgATATTTGTAAATCATTTGAAAAAGGAAAGAGATATCTCAAATCAAATT
ACCCTGTCAAATGTTCAGaaacttcaaaactttcttcTCACTCAACTTGG
TTCGCTTTAAGTTGCAAAGATGATCCAGATTTGAACACATGCGCAAAAAT
CAGTAAAGAAGAATGTGCTGATTGCACTGAACTTCACTCAGTTTTGAACC
AGATTCGGGACCTTGTCAAAGAAACTAACGATGGAGACCTCCAATACGAC
GCTAATGTTGCAATTGCAGATATTGAAGCATATATGAAACAACAAATTAG
AGATGCTCagcaaaaattaacaaagataaTGGCATTTGACCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029038-exon-sc0000720-1491911889:169594..171793 | TCONS_00029038-exon-sc0000720-1491911889:169594..171793 | Clytia hemisphaerica | exon |
| TCONS_00029038-exon-sc0000720-1510915933:169594..171793 | TCONS_00029038-exon-sc0000720-1510915933:169594..171793 | Clytia hemisphaerica | exon |
| TCONS_00029038-exon-sc0000720-1575043694:169594..171793 | TCONS_00029038-exon-sc0000720-1575043694:169594..171793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000720 | supercontig | sc0000720:169594..171793 . |
Blast
The following BLAST results are available for this feature:
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