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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029044 ID=TCONS_00029044|Name=TCONS_00029044|organism=Clytia hemisphaerica|type=transcript|length=1727bp
AAACAACCGGAATGACGTTAAGTTGACACTTTTTCTACACTATATGAAGT
GTATGGTACCTCTGGAATGTCTCAGTATAGCAAAGAGAGAAGAGTCAAGA
TGAGGTCGTTCATTTTATTAGCGTTCACTGCTTTGGCTTTTGCTTCGGCt
gtgaaaattgaaaaggaaattGAGGATCGATTGCTTCCGATCGGTAAGGA
ATTGAAAGCAGTCGCTTACAAAGTGGTGGAAAGACTCCAGGATAATTCTG
TTGAGAAACCTAAAAAACCTAAGTGCAACCTTGAATATCTAGCGTGCGTG
AAGAAGGAGGGTGGAACTCGAGAAGCTCATATCAAATGTGGAAAGAAATT
TCTCGTGTGTAagaaaaaatgttacaaaaagTGCAGGGAAGGCTACCGGA
TGTGTGTCCGAAGAATTCACAACCATAAAAAATGTGGAGGATTTTACAAG
AAATGCGCTCACAAATGTCCACATTTGAGCAAGTGCGCTCGAAAgTGCAA
AGCTACGTTCAAAAAGTGCAAGAAAAGCAAAGGAAAAGATTGTTTGAAAA
CCTTCTTGGCTTGCGTCAAGAAATGTAAACCGAAGGGCGGAAAAGCAGGG
AAAAGCAAGAACCAATCGGCTTATTACTCAAACTATTATTAGAAAATGAA
CGAGTGATGTAACTATAATTACTTACATTATCATTATTTCTTCTGTATAT
AAAAGACAAATTCACAGATCTCTTAAGTGATTGGAAGATTCAGATTCGAC
AAACTTTTCGCTCCATTTGAGGACGGGAGTcattttaataaataatatta
cctttttttgatttaaattttgtattatattttttaattgaagGATACAG
TAAAAAATAATCTCGATTGCGTAAAAAACATATGGTGTGTTTATTATGCC
TGCGTAATTGTTTACGTCGTTACCCAATGAATAAGTTCCAAAGGACTTAG
GGTTCTCTTTAATAGTCTGGCGATGTCATCGTTAATCAAATTGTTAtaaa
aatacacgctttttttaataagaatattttctataagaatatcagggtga
aaatcttaagaataccctaagaataccctctgaATTTCAccgaatttgat
aagaatatagtcattttgtatttggttaacagaaaaaactgttTCCTTTG
TTAGatataaattgaagctttgaggaagaaatgtaatcTTAACCtaaatg
ttcactcaaaagtctAAAACtctaagaatacgttaagaatatttcaccct
caattttggcacttccttaagaatacttgaccctcatccaaggTACACTA
TTTCTATAtcaaaaaagcgtgtatatctGTAGTGTGTTTAATGTTCGCTT
ACCAAATCCACTTTTACAATTTATCGAAACCAAGGATCGTTATTGATGAT
GTCTCTATACACAATACGAAACTTGATCTTCAATATTGCTTGGTCGATAG
CGTTCTTACCGCTTCCTAGATTTTTCTTCTCTTTGAAAAACGCTTGGATG
TCTTTCAGTTTTTGTTCAGTCGAAAAATCTTCTAAAACTGCTGTAAGTAA
ACGTGCTAGAAGAAAGATGTTATCTCCATATCTTTGAAAGATCTCGCTCC
ATCGTTCTTTGACCAGATTCCATGCCATGTCTTTCCCTTGTTGACTGTAT
TTGGCAATCTTTCCGATTGTGTAAGACGCATCATTATCTTTTACTATGCT
CTTGTTTAATGCGTCTtgcaagaaact Run BLAST on NCBI protein sequence of Putative cnidarian restricted secreted protein >TCONS_00029044-protein ID=TCONS_00029044-protein|Name=Putative cnidarian restricted secreted protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MSQYSKERRVKMRSFILLAFTALAFASAVKIEKEIEDRLLPIGKELKAVA
YKVVERLQDNSVEKPKKPKCNLEYLACVKKEGGTREAHIKCGKKFLVCKK
KCYKKCREGYRMCVRRIHNHKKCGGFYKKCAHKCPHLSKCARKCKATFKK
CKKSKGKDCLKTFLACVKKCKPKGGKAGKSKNQSAYYSNYY Run BLAST on NCBI transcript from alignment at sc0000723:36782..39385+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029044 ID=TCONS_00029044|Name=TCONS_00029044|organism=Clytia hemisphaerica|type=transcript|length=2604bp|location=Sequence derived from alignment at sc0000723:36782..39385+ (Clytia hemisphaerica)
AAACAACCGGAATGACGTTAAGTTGACACTTTTTCTACACTATATGAAGT
GTATGGTACCTCTGGAATGTCTCAGTATAGCAAAGAGAGAAGAGTCAAGA
TGAGGTCGTTCATTTTATTAGCGTTCACTGCTTTGGCTTTTGCTTCGGCt
gtgaaaattgaaaaggaaattGAGGATCGATTGCTTCCGATCGGTAAGGA
ATTGAAAGCAGTCGCTTACAAAGTGGTGGAAAGACTCCAGGATAATTCTG
TTGAGAAACCTAAAAAACCTAAGGTAAGTCATCGGATAAAACAGGGGAAG
AATAAGCTACATGCCATCCCAATAGACGAaatcgcgtttagataaattca
atgcattctggtttcttagggaccctcaagggaattataatctattccaG
AACATTATATAATCgacattataattcctttgagagtccccgagaaacca
gaatgcattgcatttatctaaacgcgatatcgtctattggtaTTTATGAC
TGATTAAATacttttgcattcgattgacaaaagtctgaaaagtccaCTAG
ACTGCCGAGTACTAGTatatgagaatattgtatctgctatcaatttttcg
aaatcgtAAGACATAGTATATTCTCTGTAAATGTGACCGATTTACCTTAT
TCTATTTCCCTTTTCTCCACAGTGCAACCTTGAATATCTAGCGTGCGTGA
AGAAGGAGGGTGGAACTCGAGAAGCTCATATCAAATGTGGAAAGAAATTT
CTCGTGTGTAagaaaaaatgttacaaaaaggTAAGCTGAATGAACTGTCT
AGAACTTGAACCTTTGGGGTTCAGTAGTCTATATTTGTTCACCCCCACAC
ACGCTAGGTCACAAGAACACCAAATTAGATAACTCAAGTTTTAAGAGGAT
TGCGGAGTTTCAGTGCCTATCAGAGTCACATGTTCGCTAATcgatcaaaa
ataatttttggaagaaagaaatttcgcaagaaaaaaacaactcgcaaaat
atttgaattttgcGAAAATTTACTCTCGGAGTGACGTACGATTAAAAACC
AGATCATGGCTAGAAAAAGGATTTCAGAGATACATACTCGAAAAGAAAGT
CTACACCTCGGTGTCTATCTTTTGTTCACCCTTTTATTTGTAGTGCAGGG
AAGGCTACCGGATGTGTGTCCGAAGAATTCACAACCATAAAAAATGTGGA
GGATTTTACAAGAAATGCGCTCACAAATGTCCACATTTGAGCAAGTGCGC
TCGAAAggtaagaaaaatattcttgCTTAAAGAAGGAGTACACAAGCTTG
AAGAAAGAAATCTCACTTGTTAAGTCCACTGTAGATTTGAAGgtttacat
tttctttgttttattcttTCAGTGCAAAGCTACGTTCAAAAAGTGCAAGA
AAAGCAAAGGAAAAGATTGTTTGAAAACCTTCTTGGCTTGCGTCAAGAAA
TGTAAACCGAAGGGCGGAAAAGCAGGGAAAAGCAAGAACCAATCGGCTTA
TTACTCAAACTATTATTAGAAAATGAACGAGTGATGTAACTATAATTACT
TACATTATCATTATTTCTTCTGTATATAAAAGACAAATTCACAGATCTCT
TAAGTGATTGGAAGATTCAGATTCGACAAACTTTTCGCTCCATTTGAGGA
CGGGAGTcattttaataaataatattacctttttttgatttaaattttgt
attatattttttaattgaagGATACAGTAAAAAATAATCTCGATTGCGTA
AAAAACATATGGTGTGTTTATTATGCCTGCGTAATTGTTTACGTCGTTAC
CCAATGAATAAGTTCCAAAGGACTTAGGGTTCTCTTTAATAGTCTGGCGA
TGTCATCGTTAATCAAATTGTTAtaaaaatacacgctttttttaataaga
atattttctataagaatatcagggtgaaaatcttaagaataccctaagaa
taccctctgaATTTCAccgaatttgataagaatatagtcattttgtattt
ggttaacagaaaaaactgttTCCTTTGTTAGatataaattgaagctttga
ggaagaaatgtaatcTTAACCtaaatgttcactcaaaagtctAAAACtct
aagaatacgttaagaatatttcaccctcaattttggcacttccttaagaa
tacttgaccctcatccaaggTACACTATTTCTATAtcaaaaaagcgtgta
tatctGTAGTGTGTTTAATGTTCGCTTACCAAATCCACTTTTACAATTTA
TCGAAACCAAGGATCGTTATTGATGATGTCTCTATACACAATACGAAACT
TGATCTTCAATATTGCTTGGTCGATAGCGTTCTTACCGCTTCCTAGATTT
TTCTTCTCTTTGAAAAACGCTTGGATGTCTTTCAGTTTTTGTTCAGTCGA
AAAATCTTCTAAAACTGCTGTAAGTAAACGTGCTAGAAGAAAGATGTTAT
CTCCATATCTTTGAAAGATCTCGCTCCATCGTTCTTTGACCAGATTCCAT
GCCATGTCTTTCCCTTGTTGACTGTATTTGGCAATCTTTCCGATTGTGTA
AGACGCATCATTATCTTTTACTATGCTCTTGTTTAATGCGTCTtgcaaga
aact Coding sequence (CDS) from alignment at sc0000723:36782..39385+ >TCONS_00029044 ID=TCONS_00029044|Name=TCONS_00029044|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0000723:36782..39385+ (Clytia hemisphaerica)
ATGTCTCAGTATAGCAAAGAGAGAAGAGTCAAGATGAGGTCGTTCATTTT
ATTAGCGTTCACTGCTTTGGCTTTTGCTTCGGCtgtgaaaattgaaaagg
aaattGAGGATCGATTGCTTCCGATCGGTAAGGAATTGAAAGCAGTCGCT
TACAAAGTGGTGGAAAGACTCCAGGATAATTCTGTTGAGAAACCTAAAAA
ACCTAAGTGCAACCTTGAATATCTAGCGTGCGTGAAGAAGGAGGGTGGAA
CTCGAGAAGCTCATATCAAATGTGGAAAGAAATTTCTCGTGTGTAagaaa
aaatgttacaaaaagTGCAGGGAAGGCTACCGGATGTGTGTCCGAAGAAT
TCACAACCATAAAAAATGTGGAGGATTTTACAAGAAATGCGCTCACAAAT
GTCCACATTTGAGCAAGTGCGCTCGAAAgTGCAAAGCTACGTTCAAAAAG
TGCAAGAAAAGCAAAGGAAAAGATTGTTTGAAAACCTTCTTGGCTTGCGT
CAAGAAATGTAAACCGAAGGGCGGAAAAGCAGGGAAAAGCAAGAACCAAT
CGGCTTATTACTCAAACTATTATTAGATGTCTCAGTATAGCAAAGAGAGA
AGAGTCAAGATGAGGTCGTTCATTTTATTAGCGTTCACTGCTTTGGCTTT
TGCTTCGGCtgtgaaaattgaaaaggaaattGAGGATCGATTGCTTCCGA
TCGGTAAGGAATTGAAAGCAGTCGCTTACAAAGTGGTGGAAAGACTCCAG
GATAATTCTGTTGAGAAACCTAAAAAACCTAAGTGCAACCTTGAATATCT
AGCGTGCGTGAAGAAGGAGGGTGGAACTCGAGAAGCTCATATCAAATGTG
GAAAGAAATTTCTCGTGTGTAagaaaaaatgttacaaaaagTGCAGGGAA
GGCTACCGGATGTGTGTCCGAAGAATTCACAACCATAAAAAATGTGGAGG
ATTTTACAAGAAATGCGCTCACAAATGTCCACATTTGAGCAAGTGCGCTC
GAAAgTGCAAAGCTACGTTCAAAAAGTGCAAGAAAAGCAAAGGAAAAGAT
TGTTTGAAAACCTTCTTGGCTTGCGTCAAGAAATGTAAACCGAAGGGCGG
AAAAGCAGGGAAAAGCAAGAACCAATCGGCTTATTACTCAAACTATTATT
AGATGTCTCAGTATAGCAAAGAGAGAAGAGTCAAGATGAGGTCGTTCATT
TTATTAGCGTTCACTGCTTTGGCTTTTGCTTCGGCtgtgaaaattgaaaa
ggaaattGAGGATCGATTGCTTCCGATCGGTAAGGAATTGAAAGCAGTCG
CTTACAAAGTGGTGGAAAGACTCCAGGATAATTCTGTTGAGAAACCTAAA
AAACCTAAGTGCAACCTTGAATATCTAGCGTGCGTGAAGAAGGAGGGTGG
AACTCGAGAAGCTCATATCAAATGTGGAAAGAAATTTCTCGTGTGTAaga
aaaaatgttacaaaaagTGCAGGGAAGGCTACCGGATGTGTGTCCGAAGA
ATTCACAACCATAAAAAATGTGGAGGATTTTACAAGAAATGCGCTCACAA
ATGTCCACATTTGAGCAAGTGCGCTCGAAAgTGCAAAGCTACGTTCAAAA
AGTGCAAGAAAAGCAAAGGAAAAGATTGTTTGAAAACCTTCTTGGCTTGC
GTCAAGAAATGTAAACCGAAGGGCGGAAAAGCAGGGAAAAGCAAGAACCA
ATCGGCTTATTACTCAAACTATTATTAGATGTCTCAGTATAGCAAAGAGA
GAAGAGTCAAGATGAGGTCGTTCATTTTATTAGCGTTCACTGCTTTGGCT
TTTGCTTCGGCtgtgaaaattgaaaaggaaattGAGGATCGATTGCTTCC
GATCGGTAAGGAATTGAAAGCAGTCGCTTACAAAGTGGTGGAAAGACTCC
AGGATAATTCTGTTGAGAAACCTAAAAAACCTAAGTGCAACCTTGAATAT
CTAGCGTGCGTGAAGAAGGAGGGTGGAACTCGAGAAGCTCATATCAAATG
TGGAAAGAAATTTCTCGTGTGTAagaaaaaatgttacaaaaagTGCAGGG
AAGGCTACCGGATGTGTGTCCGAAGAATTCACAACCATAAAAAATGTGGA
GGATTTTACAAGAAATGCGCTCACAAATGTCCACATTTGAGCAAGTGCGC
TCGAAAgTGCAAAGCTACGTTCAAAAAGTGCAAGAAAAGCAAAGGAAAAG
ATTGTTTGAAAACCTTCTTGGCTTGCGTCAAGAAATGTAAACCGAAGGGC
GGAAAAGCAGGGAAAAGCAAGAACCAATCGGCTTATTACTCAAACTATTA
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029044-exon-sc0000723-1491911889:36782..37054 | TCONS_00029044-exon-sc0000723-1491911889:36782..37054 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1510915933:36782..37054 | TCONS_00029044-exon-sc0000723-1510915933:36782..37054 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1575043694:36782..37054 | TCONS_00029044-exon-sc0000723-1575043694:36782..37054 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1491911889:37454..37561 | TCONS_00029044-exon-sc0000723-1491911889:37454..37561 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1510915933:37454..37561 | TCONS_00029044-exon-sc0000723-1510915933:37454..37561 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1575043694:37454..37561 | TCONS_00029044-exon-sc0000723-1575043694:37454..37561 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1491911889:37925..38038 | TCONS_00029044-exon-sc0000723-1491911889:37925..38038 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1510915933:37925..38038 | TCONS_00029044-exon-sc0000723-1510915933:37925..38038 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1575043694:37925..38038 | TCONS_00029044-exon-sc0000723-1575043694:37925..38038 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1491911889:38154..39385 | TCONS_00029044-exon-sc0000723-1491911889:38154..39385 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1510915933:38154..39385 | TCONS_00029044-exon-sc0000723-1510915933:38154..39385 | Clytia hemisphaerica | exon |
| TCONS_00029044-exon-sc0000723-1575043694:38154..39385 | TCONS_00029044-exon-sc0000723-1575043694:38154..39385 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000723 | supercontig | sc0000723:36782..39385 + |
Blast
The following BLAST results are available for this feature:
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