|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029049 ID=TCONS_00029049|Name=TCONS_00029049|organism=Clytia hemisphaerica|type=transcript|length=397bp
ccttaatgaGTCGAAACCAAGCTGCTGAACAAAACGATAATCAGTTGACC
GAGTTCATGCGGCAAAACAATATCAACGATGCTGAATTGGATGCCATGAC
GAAAAACTCGTCAACATATAAGGAGGCAATCCGTCGTTTGATGGCAAAAA
TCCTTCAAGATGAAGAATGGTTGAACTGCTCTGTTCTCAAAGAAACTCGA
AATCATTTACAAATACATTGGTCGCCATTTCGGGAAAACAACAAAGCGAA
TGATCCACGACTCGATAAGGGATCacttaaaaaacacaaaaagaaagttg
gaaaatggtgatggtgatggtgatgaaaatgaaaatcaataaGGTTTTAG
aagttttataattttttaacatacagtatgtggcccccaaaacgtcg Run BLAST on NCBI protein sequence of TCONS_00029049-protein >TCONS_00029049-protein ID=TCONS_00029049-protein|Name=TCONS_00029049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
LMSRNQAAEQNDNQLTEFMRQNNINDAELDAMTKNSSTYKEAIRRLMAKI
LQDEEWLNCSVLKETRNHLQIHWSPFRENNKANDPRLDKGSLKKHKKKVG
KW Run BLAST on NCBI transcript from alignment at sc0000723:150636..153255+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029049 ID=TCONS_00029049|Name=TCONS_00029049|organism=Clytia hemisphaerica|type=transcript|length=2620bp|location=Sequence derived from alignment at sc0000723:150636..153255+ (Clytia hemisphaerica)
ccttaatgaGTCGAAACCAAGCTGCTGAACAAAACGCAGGTTTAATTAAA
TCACAGTTTGTTCAACTTTGTTTTTGTATACCCTTTGGAAGCTACTTCTG
GAGGAGGGTCTAATAGCAGGAGGTGGTCAACATttaataagaattttata
aacGGGAGTGGTGTTAATAAATGGAAATGGGTGGTTTTATATAAAATCGA
TTAATAGGGAGGGGGGGTTTCGGCAATAAGAGTGGAAGGGtgattttcgt
tttcttttaaCACTTAAAACGGGGAGGGTGTTATTNGTTTCGGCAATAAG
AGTGGAAGGGtgattttcgttttcttttaaCACTTAAAACGGGGAGGGTG
TTATTAGAGTGGGGTGGTCGGTATTTTAAATACAATTGCTAAACGGGAGG
GTGTTAAGAAATGGAAATGGGTGGTCTTTTTGTAGGGGTCCCTTACAATT
AGCTCCCGAAGGTTATATAGTTTGAAGCTTCCCACTTTAAAATTATTAAG
GCTAAGGTCAATACTTGAAATCGATGTATACGGGGATCAGTTTTAACACT
TTGATAATTGACGAAACTTTTAGATCATATTGAATTATATTATATAAAAT
TCAATATAATATAATATATCAATAGGGACACTTTAAAAAGATCTCTAAGA
AATTTTGCATAAATTACGATAATATGGTGTGTCAGTTATATAATTCACTA
AGTCACGTTTAATTATATTTTCAGGATAATCAGTTGACCGAGTTCATGCG
GCAAAACAATATCAACGATGTAAGTCATTTTACTACGTGTGTACTTCAAG
GTTTAATTACACCATTCTTTGGTTACAAAACAATCATCTAAAGTGAATAA
ACTTCTGGCTGGCTAAAATCTGAAAACGTAAACCTGCGTAAACAAAAAAG
TCTGAATGATGTACTCTTATTCTGCTGATTTTTTTATGCTTTTGATTTTT
TGATAACAATATCTTTTTAAGATAGAAATTCTATGGAGAATGGGCATTAT
TTTAGTAAAATACCACGTATTCTTTAGTTTACCAGAGCTTAAAAAACCTT
TCCAACTTTTGAAATACTTTATTTTCGCGAGCATAAACTGGCATAAACTT
TCGCGAATTGCCCTCAAGAATGTTCCTAGGTATTCATGAAAAAGGCTAAA
ATTAAGTTTCTGCCCATGAAATTTCATACGCTCAAAGTAGTGGAATGGTG
TATTTTTGTTGTACGTCGTTCAGTTTTTCCGAATTTATAGGTTCTAAAAC
TTTTATTGCTTTCATGTTGCTAAACATAATTCCAGACAAAAACCACTTCA
AAACTTGACTGAATTCAGGACGCACTGTAAAGTACTTGGGGTATTGTTTT
AAGTAGTATAGAGCGGATAAACAGTAGCAATACGTTTTTCTTTCAGGCTG
AATTGGATGCCATGACGAAAAACTCGTCAACATATAAGGAGGCAATCCGT
CGTTTGATGGCAAAAATCCTTCAAGATGAAGAATGGTTGAACTGCTCTGT
TCTCAAAGAAACTCGAAATCATTTACAGTAAGTCAAGTTTTTATCTGATT
TCATGTCTTATGAGAATAATGTTGTCATTCGAGTATTTTCATTTGCTATT
TTGGTTTACTTACAGCAACAGGGTTATAAGCAACCCCAATTTTCGGCCCA
AGGGCTGGAGTTACCGAGGGTTTTCAGAAATTTAGCCTAAAAGTTTCCTC
GGTTTTTTAGCCCAAAAACCTGCTATTAAGTACAAAATATGTatttaaat
tgctttaaaagAAGGCGTGTTTTGACTTTAATCTAATTTTAATTTCGTTa
cacaaaactttcttttgttaGGGGCGTTTATCCGaaggagttatttaaaa
aagggGGTGTTTACTATATAGTTTATTTCAAGGGATGGGCGTTAGAAAGA
AGATTATGTTTTTTCGAAGTCATACAGTATCTCCCGGggtggggtactta
ggcaaatggagggtacggtatgtgccgcccttaagggtacctcttttgga
tttccaaagtctcgctaagggtcggaaaaattagaaaatcaaatttcagt
caaactaagggtcggaaaaataagaaaatttaatctttctacccccctga
aagatcaaaatttggtcgaaattggtcaaatttgtcccgctaagggtcgt
aaaattcccaaaattttcttttgttttctcctttttagtcccggtaaggg
tccaaatttcgaaagtagGCGGTATCCCCCctcgtcagctcgcaacccta
atACCCCCTGGGCATTATTTCCATCTGATATATATAAtaaattatttctc
aatttatgTACTTTTTAGAATACATTGGTCGCCATTTCGGGAAAACAACA
AAGCGAATNAACCCTAATACCCCCCGGGCATTATTTCCATCTGATATATA
TAAtaaattatttctcaatttatgTACTTTTTAGAATACATTGGTCGCCA
TTTCGGGAAAACAACAAAGCGAATGATCCACGACTCGATAAGGGATCact
taaaaaacacaaaaagaaagttggaaaatggtgatggtgatggtgatgaa
aatgaaaatcaataaGGTTTTAGaagttttataattttttaacatacagt
atgtggcccccaaaacgtcg Coding sequence (CDS) from alignment at sc0000723:150636..153255+ >TCONS_00029049 ID=TCONS_00029049|Name=TCONS_00029049|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000723:150636..153255+ (Clytia hemisphaerica)
ttaatgaGTCGAAACCAAGCTGCTGAACAAAACGATAATCAGTTGACCGA
GTTCATGCGGCAAAACAATATCAACGATGCTGAATTGGATGCCATGACGA
AAAACTCGTCAACATATAAGGAGGCAATCCGTCGTTTGATGGCAAAAATC
CTTCAAGATGAAGAATGGTTGAACTGCTCTGTTCTCAAAGAAACTCGAAA
TCATTTACAAATACATTGGTCGCCATTTCGGGAAAACAACAAAGCGAATG
ATCCACGACTCGATAAGGGATCacttaaaaaacacaaaaagaaagttgga
aaatggtgattaatgaGTCGAAACCAAGCTGCTGAACAAAACGATAATCA
GTTGACCGAGTTCATGCGGCAAAACAATATCAACGATGCTGAATTGGATG
CCATGACGAAAAACTCGTCAACATATAAGGAGGCAATCCGTCGTTTGATG
GCAAAAATCCTTCAAGATGAAGAATGGTTGAACTGCTCTGTTCTCAAAGA
AACTCGAAATCATTTACAAATACATTGGTCGCCATTTCGGGAAAACAACA
AAGCGAATGATCCACGACTCGATAAGGGATCacttaaaaaacacaaaaag
aaagttggaaaatggtgattaatgaGTCGAAACCAAGCTGCTGAACAAAA
CGATAATCAGTTGACCGAGTTCATGCGGCAAAACAATATCAACGATGCTG
AATTGGATGCCATGACGAAAAACTCGTCAACATATAAGGAGGCAATCCGT
CGTTTGATGGCAAAAATCCTTCAAGATGAAGAATGGTTGAACTGCTCTGT
TCTCAAAGAAACTCGAAATCATTTACAAATACATTGGTCGCCATTTCGGG
AAAACAACAAAGCGAATGATCCACGACTCGATAAGGGATCacttaaaaaa
cacaaaaagaaagttggaaaatggtgattaatgaGTCGAAACCAAGCTGC
TGAACAAAACGATAATCAGTTGACCGAGTTCATGCGGCAAAACAATATCA
ACGATGCTGAATTGGATGCCATGACGAAAAACTCGTCAACATATAAGGAG
GCAATCCGTCGTTTGATGGCAAAAATCCTTCAAGATGAAGAATGGTTGAA
CTGCTCTGTTCTCAAAGAAACTCGAAATCATTTACAAATACATTGGTCGC
CATTTCGGGAAAACAACAAAGCGAATGATCCACGACTCGATAAGGGATCa
cttaaaaaacacaaaaagaaagttggaaaatggtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029049-exon-sc0000723-1491911889:150636..150670 | TCONS_00029049-exon-sc0000723-1491911889:150636..150670 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1510915933:150636..150670 | TCONS_00029049-exon-sc0000723-1510915933:150636..150670 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1575043694:150636..150670 | TCONS_00029049-exon-sc0000723-1575043694:150636..150670 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1491911889:151360..151404 | TCONS_00029049-exon-sc0000723-1491911889:151360..151404 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1510915933:151360..151404 | TCONS_00029049-exon-sc0000723-1510915933:151360..151404 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1575043694:151360..151404 | TCONS_00029049-exon-sc0000723-1575043694:151360..151404 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1491911889:152032..152162 | TCONS_00029049-exon-sc0000723-1491911889:152032..152162 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1510915933:152032..152162 | TCONS_00029049-exon-sc0000723-1510915933:152032..152162 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1575043694:152032..152162 | TCONS_00029049-exon-sc0000723-1575043694:152032..152162 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1491911889:153070..153255 | TCONS_00029049-exon-sc0000723-1491911889:153070..153255 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1510915933:153070..153255 | TCONS_00029049-exon-sc0000723-1510915933:153070..153255 | Clytia hemisphaerica | exon |
| TCONS_00029049-exon-sc0000723-1575043694:153070..153255 | TCONS_00029049-exon-sc0000723-1575043694:153070..153255 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000723 | supercontig | sc0000723:150636..153255 + |
Blast
The following BLAST results are available for this feature:
|
