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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029057 ID=TCONS_00029057|Name=TCONS_00029057|organism=Clytia hemisphaerica|type=transcript|length=4365bpRun BLAST on NCBI transcript from alignment at sc0000723:37361..85764- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029057 ID=TCONS_00029057|Name=TCONS_00029057|organism=Clytia hemisphaerica|type=transcript|length=48404bp|location=Sequence derived from alignment at sc0000723:37361..85764- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029057 vs. Swiss-Prot (Human)
Match: LCAP (Leucyl-cystinyl aminopeptidase OS=Homo sapiens GN=LNPEP PE=1 SV=3) HSP 1 Score: 234.187 bits (596), Expect = 1.152e-109 Identity = 161/576 (27.95%), Postives = 289/576 (50.17%), Query Frame = 1
Query: 985 SKTSTYTDKKEVARIQGHELVHQWFGNLATMKFWNEAWLKEGFATFIAYIVIEDINPSMELMNTVLSDLMLKAMDIDSFSTSKPISRTVNTPNEIRQIFDSITYYKGCCMVQTLYCYMGKANFQRGMQRYLKTYSYGNANQDDLW---NELSKESGGKDIKSVMDTWTKQIGHPVITTKRINATHMQVKQDRFKLD-PPGIEAPKSPFNYRWKVPI--IVKNIN-SKQQKTHLLSTEEDIFPITNDDL---LNPDHSLYYRVNYGEETFARLVKELNNDHLKLTELDRAGLVSDYFYLFXXXXXXXXXXXXXXDYIENEQASTVWDIAAGEMGQLSALIQSKDHKDKWRKF---VFTKVNKTVSSIGWETKSTYKESALQTTMLRFGCHMNISSVVQTAKLKFSEWM--NGTLVLDKNLYPVMRECAISNSLNDDTFFAYTYQRYL----ETRDNALLTSLTTVKNPKLIQSFLQDALNKSIVKDNDASYTIGKIAKYSQQGKDMAWNLVKERWSEIFQRYGDNIFLLARLLTAVLEDFSTEQKLKDIQAFFKEKKNLGSGKNAIDQAILKIKFRI 2655
S TS+ D+K V +I HEL HQWFGNL TMK+WN+ WL EGFATF+ Y +E I + L D K M DS ++S PIS +V + +I ++FDS++Y+KG ++ L Y+ + FQ + YL +SY + DDLW NE++ ++ D+K +M TWT Q G P++T ++ + ++Q+RF L+ P I+ S +Y W +P+ + + N SK Q LL + + +T + L +N + + YY V+Y ++ + L+ +L + L++ DRA L+++ F L L ++Y+ NE + A + + L++ + D + VF + + W + T L++ +L F C N+ + TA F +WM NGT L ++ + + D +++ +Y+ E N +L +L + ++ + + ++ +LN + S+ I + ++ G +AW+ VKE W+++ Q++ + + ++ FST+ L ++QAFF+ + + +A+ I+ I
Sbjct: 447 SNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKIFKELSSYEDFL-DARFKTMKKDSLNSSHPISSSVQSSEQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVTNQT--LDVKRMMKTWTLQKGFPLVTVQK-KGKELFIQQERFFLNMKPEIQP--SDTSYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANLINNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTDLIYNLLEKLGYMDLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLEFACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVFKVGAKT----DKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNGDNFRTQKLSFIIRTVGRHF-PGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATFRLRCVQEALEVIQLNI 1011 HSP 2 Score: 184.111 bits (466), Expect = 1.152e-109 Identity = 104/281 (37.01%), Postives = 157/281 (55.87%), Query Frame = 2
Query: 134 PWKEPRLPQNVRPSIYQVDLDVYLDKGVYNGRVKINVSILDNATNVLRIHKVGYNITHTSIRSIENSSDVKIAKTFNYLPYEFWVIETDNALQPGK-YEISLSFDAVLSDELNGFYKGSYKDDDDQTRRFAATFFSPISARKAFPCFDEPSFKAVFELTLTHENGYKALANMPEGSSKTLANNRVKTKFLPSLNTSTYIVAWVITDFHSLSFTDSKLNLKGWTPLNHNVTELEYGLNITAVLLPQYEKYFKIDFPLKKLDVVTLPAFAPSAMENWGLIMFQ 973
PW + RLP V P Y++ L L + G V I+V L N++ +H G+NI+ + S +S + K A+ Y + I AL G Y + + + A +S GFY SY D+ ++ + FAAT F P++AR AFPCFDEP+FKA F + + + Y AL+NMP+ SS L + V+ +F S+ STY+VA+++ + +LS D L + + ++ Y L T LL ++ YF+I +PLKKLD+V +P F AMENWGL+ F+
Sbjct: 162 PWAQIRLPTAVVPLRYELSLHPNLTSMTFRGSVTISVQALQVTWNII-LHSTGHNISRVTFMSAVSSQE-KQAEILEYAYHGQIAIVAPEALLAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNMPKKSSVVLDDGLVQDEFSESVKMSTYLVAFIVGEMKNLS-QDVNGTLVSIYAVPEKIGQVHYALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFR 439 The following BLAST results are available for this feature:
BLAST of TCONS_00029057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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