TCONS_00029064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029064
Unique NameTCONS_00029064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029064 ID=TCONS_00029064|Name=TCONS_00029064|organism=Clytia hemisphaerica|type=transcript|length=591bp
CGTCTTGCACTGTAACCACTATACGGACGTCTTTTATAGTTTTTATGACT
AAATTAGGCCAAGTTTTCTTGATACCCCGGATGATTGTTTCATTATGTCA
GGCACACAATCATCAAACTCCTTAACGGTTTGTTCTTCACATTCATATGT
AATTTTAAAACGGACTGAAGGGTAGCTCATTGAAGAATTTTATGAAGAAT
GTTTGTCTTCAAACTTGAAATTCGATTTTTACGGTCGATTTCCGGACTTG
TACGAAGGTCATCTTTATAGTATTGCTAGTACTGTTTTCCCTCTTATGTT
GCTTGATATTGATGAACAATTTGTCTTATAactatatattatatatatat
taagAGGATGGGAGGTTAGAATTCGTGTTTGTTATTTTCGGTGGATATGA
GGTCAGACTTTGTGTTTCTTATATTGAGTGGATGAAGGGGGGTCGGGTTG
TGTGTTCCTTATATTTAGAGGATTGGGAGGTCGGAATTCGTGTTTGTTAT
ATTAAATGGATGAGTGAGTTCGAAATTCGTGTTTATATTAAGTGGATGGG
AGGTGGGAATTTGTGTTTCTTATATTAAGTGGATGGGGAGG
Run BLAST on NCBI

transcript from alignment at sc0000723:77810..78400

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029064 ID=TCONS_00029064|Name=TCONS_00029064|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at sc0000723:77810..78400 (Clytia hemisphaerica)
CCTCCCCATCCACTTAATATAAGAAACACAAATTCCCACCTCCCATCCAC
TTAATATAAACACGAATTTCGAACTCACTCATCCATTTAATATAACAAAC
ACGAATTCCGACCTCCCAATCCTCTAAATATAAGGAACACACAACCCGAC
CCCCCTTCATCCACTCAATATAAGAAACACAAAGTCTGACCTCATATCCA
CCGAAAATAACAAACACGAATTCTAACCTCCCATCCTcttaatatatata
taatatatagtTATAAGACAAATTGTTCATCAATATCAAGCAACATAAGA
GGGAAAACAGTACTAGCAATACTATAAAGATGACCTTCGTACAAGTCCGG
AAATCGACCGTAAAAATCGAATTTCAAGTTTGAAGACAAACATTCTTCAT
AAAATTCTTCAATGAGCTACCCTTCAGTCCGTTTTAAAATTACATATGAA
TGTGAAGAACAAACCGTTAAGGAGTTTGATGATTGTGTGCCTGACATAAT
GAAACAATCATCCGGGGTATCAAGAAAACTTGGCCTAATTTAGTCATAAA
AACTATAAAAGACGTCCGTATAGTGGTTACAGTGCAAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016530XLOC_016530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029064-exon-sc0000723-1491911889:77810..78400TCONS_00029064-exon-sc0000723-1491911889:77810..78400Clytia hemisphaericaexon
TCONS_00029064-exon-sc0000723-1510915933:77810..78400TCONS_00029064-exon-sc0000723-1510915933:77810..78400Clytia hemisphaericaexon
TCONS_00029064-exon-sc0000723-1575043694:77810..78400TCONS_00029064-exon-sc0000723-1575043694:77810..78400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000723supercontigsc0000723:77810..78400 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0928737	0	0	0.308637	0	0	0	0	0	0.0969412	0	0	0	0	0	0	0	0	0	0	0.0897955	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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