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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029101 ID=TCONS_00029101|Name=TCONS_00029101|organism=Clytia hemisphaerica|type=transcript|length=1828bp CAAACTTCAAGCGACGTTTGGTTTGAAAGAGAATTGAGGTATTTCTCTAC AATTAAAAACTCTCAAAGAAATGATGTGATTAAAGTTGTGCTCTAAAAAA TTGATATtggttcaaatttttattttgattctcGTTCACTGACGATTTGG ACAATCGTTAACTGTCGTTCATCTTTCTCAACTTGTGGTGAAGAAGACGA CCAAGCTTCAGGGATGGAGAAGACCATCAGACGGTTTTCAAATGCCATGT CAAGAGGGAGACGGtcttttaaaaaatacacaCTTTCACGGAAACATCGA GACGAACGGAGTGATGGAGCAGGAGCAAGCAAGACCAAAATCGATGACAC CAAACAGAGCAATGCAGTTATTCCTTTGGATGCTAAGAGTACAACAATTA AAGAAGAAGACGAAGTTCAAACAAATTCTCTGATGCTAAATAAAGAACAT TGCAAAAAGAAAGTGGGTTATCTGGTCAAGTCACCCTCAAagatttgttt taaaaataagaTAGCGAGATGGCATCTGAGGTGGTTCGTACTGTACGATA ACAAACAGTTGTATGAAGAGGGTGAAAGTGAGGAGAGGATTGTGGAATTG ATTTATTACAAGAATCACCAGGAAGAACAAAAACACAGCCAACCATTAGG TCGCATCGATTTACGTGGTGCGAAGGTGATTCCGCACAAAGGTGGACTTC ATGGCTACCATTACGCCATCAACGTTGTCACTCCATTACGGTGCATCCAC TTGTGCGCCACGCAGAGTGTCGTTTATGAGGAGTGGCTGCAAAAGTTGAG GATGTTTATTGATGAAACGACCACACCCATCGAAACGGAACTGaCATTCA TGGAAATTGACGAAGGATATAATACGTGggGCAAATCACAACAACCACCA CCCTCACCTAGCTTTCGAGAGCtgacaaagaaagattttagaAATCAAAA GAAGCACGGTAAAACGTACATACAAAAGCAAGAATACTCAAACATAGATT CACCCTCACAAATAACCACGCCCTTCAAATCAGCGTCAAGCTTCTTTGAA CCAGATACTGACACATTGGATGTTCCGCCCCCTCCCTTGATAAGACGCCC TCGATCAAATACAACGCAGCCTATTGACTCAACGTATATTGATGATGGAG ACAGTCAATGGGAGGTTTCAGCCTTCACAGGTCCAACCACCTGCTTCGTC AGTTCGAAAACACTCCTACGTCAAAAGTCCAGCTCGACCAGCGCTCTCTT CACATCTTCACTCAACACCAATTCATCAACTACTCTACCGAGGAATGTGA AACATCGAATACCGGATACTTTGAATGAGCTCTCGCCCTCCATGATAAGT CAACAAAGACAGCCAATCAGACAAAGAAATTCTGTTGGACCCACCAGTCA TTGGAGGATCAACTAGTGACACACAAATGACGCATTGGTATTTTTATCAT TGTTGACTACAACAGACACACTTGGATTAGGCCATGGAATTTCATCCTAG ACTACAATTTCCATAATGTCACGTATCTTCTTTCGTCCTGGTCGCGTTTC AGTGACTGTAGACTTGtaaatagtgaaaaatctaaaatctaaatttatat aaaaccttccgaaactttcaaaatatttggaagAAGTAGCTACCAATTTa gatcttttgaaagaattatATTNTCAAAATATTTGGAAGAAGTAGCTACC AATTTggatcttttgaaagaattatATTGACCGGCAATGACCCTAATGGC CAGAATGTATATTGAAGCGCTAACTTTAAGGGCTTTTCTGTTATCTCGCG ATGTCTAGTTTCTAAGTTTACAAAATAC Run BLAST on NCBI transcript from alignment at sc0000724:94943..102383- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029101 ID=TCONS_00029101|Name=TCONS_00029101|organism=Clytia hemisphaerica|type=transcript|length=7441bp|location=Sequence derived from alignment at sc0000724:94943..102383- (Clytia hemisphaerica) CAAACTTCAAGCGACGTTTGGTTTGAAAGAGAATTGAGGTATTTCTCTAC
AATTAAAAACTCTCAAAGAAATGATGTGATTAAAGTTGTGCTCTAAAAAA
TTGATATTGGTTCAAATTTTTATTTTGATTCTCGTTCACTGACGATTTGG
ACAATCGTTAACTGTCGTTCATCTTTCTCAACTTGTGGTGAAGAAGACGA
CCAAGCTTCAGGGATGGAGAAGACCATCAGACGGTTTTCAAATGCCATGT
CAAGAGGTTTGTTGATTATGCTGATTTGTCTCGTTTTAAACCGAGCAGCT
AGATCAAACTTACAGCATTAAATTTCTTTCTATGGCACTTTCGCATGTTA
CACGGTTTGCAATATGATTATTTTCCAGTAAATTTTATTTTCATAGATCA
AGATTCTAGGCAGCTCAATAAAGTCATATAATTAAATGAAATTTTCCCTG
TTCATTTCGAAAATGTTTTCAACAAGCGGATACAATTGTGTCAATTCGTT
TTAACCAAAGGAGATTCAGCCCTCTTGTGCTCATCATGATTTATGAGGGT
CTGTATGGAAAAAAAGACCATGTTTAGATCGATATGTACCGTACTGTCAA
TTTTGGGAACACATTTCGATATTAGTCAGTGTTATGTCAGTTGTTTCAGT
ATTCCATTCAAGCATGTAGTTTGCTGTCTGTTGTAAAAGTAGAGTAGTAT
TAGTGATAACCAGCCAACCAGTTAGTTTAGCGAGAATAAATCTAAGCTTG
AAATGAGGATTCGAATCTATTCGCTTTAAGGGTGCACTAATCTTTTTCTT
GCTTGCCATTTTTAACATAATGTTTAAAAAAGATCTTATTCAAAGCACTG
AAATTTTTGAGGAAAGTAATCAAAATCGTTTAGAGAATGAAGAAGAAAAA
AATGAACTTTCTCTCCTTTGAGGTTAGAAACTTATTTTTGGTACAGTAAG
CTTCCTGATATCAGCTGTATAGTTTTCCCCATAAGATTCTTACATCGAAG
GTTACAACCTCTCGAATGCACTTCTTTGGAATCGTAAAACCCCGAATTTT
GCTGCTACTTCACTCCAACAAGCAATCTTCTAAGGCCTTCTAAGGCACTT
TTCTATATGTATTCTATTGTACAACTGAAATCAATAGGCTTCAAAGTACC
TCTGTATGAAAAATAAAGTTTTTAGCACTTCAGGATAATCCTTTGTTTCT
TCATCATTTTTCATCTTCATTATCTAAAAGTTATTTTTACTAGAAATTAT
AGTGCTTTGAATTATCTTTTCACCGGCATATAATATGTTAGAATTGGAGT
TATATTAACAAATAGCAAGGTAAAAACTAGGCTGGCTACAAGATTAGTGC
ATACTTAAAGTGAAAAGATTTTGCGCACAGAATGGTACGGGAAGATGCTA
CTGGTGGTATCGGCAGAATCTCGAGAACACGACGATATATAGCCTTGCTT
AAGTTTTTAACAAGAGCTGTACCAAATAATGGGAAAGCTTATTAGTAATG
ATCGCAAAATATTTAGGGAGACGGTCTTTTAAAAAATACACACTTTCACG
GAAACATCGAGACGAACGGAGTGATGGAGCAGGAGCAAGCAAGACCAAAA
TCGATGACACCAAACAGAGCAATGCAGTTATTCCTTTGGATGCTAAGAGT
ACAACAATTAAAGAAGAAGACGAAGTTCAAACAAATTCTCTGATGCTAAA
TAAAGAACATTGCAAAAAGAAAGTGGGTTATCTGGTCAAGTCACCCTCAA
AGATTTGTTTTAAAAATAAGATAGCGAGATGGCATCTGAGGTGGTTCGTA
CTGTACGATAACAAACAGTTGTATGAAGAGGGTGAAAGTGAGGAGAGGAT
TGTGGAATTGATTTATTACAAGAATCACCAGGAAGAACAAAAACACAGCC
AACCATTAGGTAAGATTCATTATACGAGCGTGGTTATTGAAGACTTGTCA
TTGCAAAAAGAAGGCCTTGTCAATAGCCGTCAACTTTCTTCAAACAAATA
ATTTTCACTGTGGCATATAAAAATTCGTCATCTCTGTCAATTTGATTCTT
AAATCCAACTTTAAGGTTGTTAATGATGATTGAATGATGAAACTGTTTTG
ATTGAAAAAGAACATTTGTCATCTTGAAGAATTCGAAAAATCTTTTTGGC
AGGAAAACGCTTGATTTTTATTAGCTACAACTTGATTAATTTAATTACGC
TGCTAAAATCTTTTTAAGTATTTATTGCTATTGTTTTTCCAACTCATGTC
TCAAACTTTGAGTGTTTTCTTTATGGTTTCTTGTCATGATTATGAACGGG
TTGACCCAGTTGATAACATTACTGACCGGGGACCATAAACTTTTGATCGA
GAATCATATCAAATTTTTATCAATTTTGACCATTGACTCATTATCCTACC
GGGCTTAAAATTATGCCATTTTTGCAATTATTTTTCTGACTGATACAGAG
GTGTCTAGGATTATCCTAAATTTCACATCACGCCCTATCTGTTAGATAGA
CTCAGACTCCATAGAGTTCAACATCAATTCAGCATCGGTAGATATTCGTT
TTCGCTCAAATGTCCTGTATGATTTCCGATATATAAAGCAGAATCTGACT
TTTGTTACCCAACTGCAATCTGGATTTTGTCATGTCTGCATTTCGATTTT
ATCCCTGTAGGCATCCAATTATATTTTCCTTGTATACCATATGTATAATA
TCTGTAACACTATTCCAGGTCGCATCGATTTACGTGGTGCGAAGGTGATT
CCGCACAAAGGTGGACTTCATGGCTACCATTACGCCATCAACGTTGTCAC
TCCATTACGGTGCATCCACTTGTGCGCCACGCAGAGTGTCGTTTATGAGG
AGTGGCTGCAAAAGTTGAGGATGTTTATTGATGAAACGACCACACCCATC
GAAACGGAACTGGTAAAAATACAGATAATCCTCTATTGCAAGATCCGGCT
CGGTCTTAACATGGCTTTAAAAAGGCTAAGTAGATAGCACAAGTGACACG
CTCTAATAGCTACAAACAACAAAATTAACAAAGGGAGACTTTAACCCTCG
ACAATTATCTTGCTTAGCTTTTAATAGACAGGAGTAGCAGAGTATTCTGA
GATTTCTTCAACCAAACATGACTCGTTCTCTTTTTCATATTTTAGACATT
CATGGAAATTGACGAAGGATATAATACGTGGTAAGAGATTCCCTTCGCAC
TTTCGATGATGACACTAACTTCCTTCCTTATCAAGAAAACTATTATTTTC
TGACATCTTCGTCACATTCATAAGCAATGTTATTGAGCTTCTTTTTTGGC
TAGATATTGCGATGCCATAGGTATTTTGAAATACCCAAGAACAAATGACC
TCTACTTTTAAAAAAGCAAAAAAGGTCAAGTTTAGGCTTTATTTTCAAGA
AAAAATGAACAAAATGAAATTGGCTACCACTGGGCGAAATCATAGATTTC
TAATGTAGGAAATATATAGGAAATCTAACATTTTCTATATATTTCATACG
TTTTGAAAGACCATATTTCCTACGAAATGTAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATAGTTCTTTTAAAAAAAGTAGAATACAAATAAGCAGATAAT
TTCCTTACTTACCCTTGATTTACTTGACGAGAAATGGTTTCGTGGAGTTT
ATGTTATGATATACAGCATCACGACCTCCTGTAGTGTAGAAAGACAAAAG
AGTCAAACATTTTGTCAAACAAATGAACAGCAAAGGAAAACAACATTTAC
AAAAAAGTAAAAAAAAAGTAGAAAATATACCCCTGATCTGGGTGAATGAC
ATGACAAATCGCAAAGGCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GAAAGGTGGACTTTCAAAGTCCGCTTGAAATTCATTGAAATACTGTTTTT
TATATACAGTTTTACTATATTTACAATTTGGGAAATCTATGATTTCGCCC
AGTGTACTCTAGGATGGTTTCGTCGGTTTGTAGAATATAAGACAAGTTCG
ACCTCCCCCCCAATATATAGAGATCGGGTAGATATAGACTTTATAATCTA
CTCTAAACAACAAGCTAGGTCAGTACCAATTAAACGATGCTTAGCCTAAA
CAGAAGGTTTCGACTTCCTTTCACTNAAACAACAAGGTAGGTCAGTACCG
ATTACACGATGCTTAGCCTAAACAGAAGGTTTTGACGACTTCCTTTCACC
TGGCTCCACCAAAGGTTACCGCCATGAATATTTACATTCTGTCACAACAC
CAACTTATCCAATCATTGAAATGAAAATTTTCTTTTAGGGGCAAATCACA
ACAACCACCACCCTCACCTAGCTTTCGAGAGCTGACAAAGAAAGATTTTA
GAAATCAAAAGAAGCACGGTAAAACGTACATACAAAAGCAAGAATACTCA
AACATAGATTCACCCTCACAAATAACCACGCCCTTCAAATCAGCGTCAAG
CTTCTTTGAACCAGATACTGACACATTGGATGTTCCGCCCCCTCCCTTGA
TAAGACGCCCTCGATCAAATACAACGCAGCCTATTGACTCAACGTATATT
GATGGTAAGAGAAAGGATGCATGCTTATGCACGTTTTGCATAAAGTTTCT
TTTAAATTTCAGTCAAACATGCTGGAAAATGGATTTCCGTTACAACGGAG
CAAAAACAGAGTCAAGCGGGGTGGTGAAGGCTATTACTAGATTTTGTGGA
AAGGCTAAAGGCTAGTTATTTCATGCCAAAAATTTCGTTCAGGGTCGTAA
TTTTCACCTTTAATAGTCTCTCTTCAAAGATCAATGTTTCTCGTTATGGG
GTGGTGAAGGCAATAGTTTGTGCTTTCGTCTTTTTGACAAAAATTTCAAA
TTTCAAGCACCAGTTAAATGAGGACAGATAGATTAACGCTCGTTCAATTT
TCTTCAGATGGAGACAGTCAATGGGAGGTTTCAGCCTTCACAGGTCCAAC
CACCTGCTTCGTCAGTTCGAAAACACTCCTACGTCAAAAGTCCAGCTCGA
CCAGCGCTCTCTTCACATCTTCACTCAACACCAATTCATCAACTACTCTA
CCGAGGAATGTGAAACATCGAATACCGGATACTTTGAATGAGCTCTCGCC
CTCCATGATAAGTCAACAAAGACAGCCAATCAGACAAAGAAATTCTGTTG
GACCCACCAGTCATTGGAGGATCAACTAGTGACACACAAATGACGCATTG
GTATTTTTATCATTGTTGACTACAACAGACACACTTGGATTAGGCCATGG
AATTTCATCCTAGACTACAATTTCCATAATGTCACGTATCTTCTTTCGTC
CTGGTCGCGTTTCAGTGACTGTAGACTTGTAAATAGTGAAAAATCTAAAA
TCTAAATTTATATAAAACCTTCCGAAACTTTCAAAATATTTGGAAGAAGT
AGCTACCAATTTAGATCTTTTGAAAGAATTATATTNTCAAAATATTTGGA
AGAAGTAGCTACCAATTTGGATCTTTTGAAAGAATTATATTGACCGGCAA
TGACCCTAATGGCCAGAATGTATATTGAAGCGCTAACTTTAAGGGCTTTT
CTGTTATCTCGCGATGTCTAGTTTCTAAGTTTACAAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00029101-exon-sc0000724-1575043694:102128..102383 | TCONS_00029101-exon-sc0000724-1575043694:102128..102383 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1575043694:100475..100867 | TCONS_00029101-exon-sc0000724-1575043694:100475..100867 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1575043694:99472..99665 | TCONS_00029101-exon-sc0000724-1575043694:99472..99665 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1575043694:99204..99238 | TCONS_00029101-exon-sc0000724-1575043694:99204..99238 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1575043694:95980..96245 | TCONS_00029101-exon-sc0000724-1575043694:95980..96245 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1575043694:94943..95626 | TCONS_00029101-exon-sc0000724-1575043694:94943..95626 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1510915933:102128..102383 | TCONS_00029101-exon-sc0000724-1510915933:102128..102383 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1510915933:100475..100867 | TCONS_00029101-exon-sc0000724-1510915933:100475..100867 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1510915933:99472..99665 | TCONS_00029101-exon-sc0000724-1510915933:99472..99665 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1510915933:99204..99238 | TCONS_00029101-exon-sc0000724-1510915933:99204..99238 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1510915933:95980..96245 | TCONS_00029101-exon-sc0000724-1510915933:95980..96245 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1510915933:94943..95626 | TCONS_00029101-exon-sc0000724-1510915933:94943..95626 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1491911889:102128..102383 | TCONS_00029101-exon-sc0000724-1491911889:102128..102383 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1491911889:100475..100867 | TCONS_00029101-exon-sc0000724-1491911889:100475..100867 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1491911889:99472..99665 | TCONS_00029101-exon-sc0000724-1491911889:99472..99665 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1491911889:99204..99238 | TCONS_00029101-exon-sc0000724-1491911889:99204..99238 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1491911889:95980..96245 | TCONS_00029101-exon-sc0000724-1491911889:95980..96245 | Clytia hemisphaerica | exon |
TCONS_00029101-exon-sc0000724-1491911889:94943..95626 | TCONS_00029101-exon-sc0000724-1491911889:94943..95626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000724 | supercontig | sc0000724:94943..102383 - |
Blast
The following BLAST results are available for this feature:
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