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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029102 ID=TCONS_00029102|Name=TCONS_00029102|organism=Clytia hemisphaerica|type=transcript|length=1754bp
TGCGTTGTAATTTCATAATGATTTCATATAGCGCGTCGGCGTTATTGCAT
CAGCCGTTATCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTACTGTGG
ACAATTTTCTGAAATGTTTGAGTAGATTCGCAGTAGTAGCTGGCTAAGTT
GTTTCACAAACGTGATGGTTGAATGGCTGGAAGAAGAGTTCAAGCAGTCT
CAACTTTCATCATATCTTGAGGTTGAGGTGAGAGTTTATTGATTCCTTgt
caaagttattttcaaaaaagatagcaTATTCAtagtttatattttctttt
ttgcatattataaatcaaaatttactaAAAATGAACACTCAAATCTCTCT
GTTGATTGACAAAAGACAGAAAGAATAATGGACAAAATGTATATATGAAT
GAATTTGGtgttgaaatgaaaatgttggTAATTCGTTGATTGTTTATTGT
TGTTTTAGTATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATGGC
TTTACATCGTCCTTGAGCTTGGTATTACCATCGCCtttctgtttttgttg
ttgGTTCGTTTCTTCACACCTGAATACTGCACCGAAAGAGTTCATAAAAG
TGATAGGTAAGCTAAAGGTCTCTTTTTGATCCATCAAAATTTGCTAACGC
AGACACTTTAACGTGTGTTTCTAGATATGCTATGCCGGGATCAATCAATA
ACCAAATAAAGACCCTGTCGACGCACCAGACTTAACGAACACGGGACATG
CGAAAGTCcagtgtaaaatgagaattttttttaccaccggacaatctcta
caccggacttaaggaagtcggatgtctagtgtcggagaaggatatttttt
tccaccggacaatcaaaacaccggcaAGGTATTATAAGCATTGAGTttag
tggcttcacttttcctTGTCCGANAATAGCGACACTACAAAAATCGAAAC
AAGaaattcAATCGGCGACCAtctatttgcaaaattttaacgCCACTATT
ATGCTGGTATAATTGAAAATGCACATGTTCACGTATCCTACTAAACACTA
TCACGTTTCACGATTAGATTGACCAATGTTTTTTCAAAGCTTATTCGTTA
TTGGACTATTATGATGCTGCAATGGATTTTTGGTTCAGTATACCTATCCT
GTATCTAATTCAATGTCTTGTTATTGGAATTATTGCTGTTGGAATAACGT
TGGTATTGGACAATAATTAAAGACTTTATTTCAACTAAAGAGTATTACAT
ATTTCAAATGTATTGCAAAGAAGTAATTAATATTGTACAATAGTAATATT
GTTAATATTTATAGACAATTATATGATTATCTAAAACAAGattgttcaaa
atttatgttaaaaatgaatttttttcaaaccttgttacacatttttttta
taagcaactccatttTTCGGGCCAGGCCTGGAGTTGCTAAGGGTTTTTTG
AAATCCAGGCTCAAAGTTTGCTTAAAGATTTTCAAGCacgtttttgcatt
tttaacaatttttcaattttgaatgggcAGTAGAGgcatttttcgaagat
tttcaaGTTGTGTCAAAGTTCTTTTTTAttgctgaggaaaaaagttgctA
ATTTGGATTTGAGGCCTCAGGGTTGCTAAGCAAGGTCCTTATTTTTTGGG
CCATATTGAGGCCTGAGCCCTAATcaactcggttgcttataaaaaaaatg
tgtaatcgaCCCTGACAAAATGTTGACGATTtttgcacccattttgccta
agcc Run BLAST on NCBI transcript from alignment at sc0000724:108368..110744- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029102 ID=TCONS_00029102|Name=TCONS_00029102|organism=Clytia hemisphaerica|type=transcript|length=2377bp|location=Sequence derived from alignment at sc0000724:108368..110744- (Clytia hemisphaerica)
TGCGTTGTAATTTCATAATGATTTCATATAGCGCGTCGGCGTTATTGCAT
CAGCCGTTATCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTACTGTGG
ACAATTTTCTGAAATGTTTGAGTAGATTCGCAGTAGTAGCTGGCTAAGTT
GTTTCACAAACGTGATGGTTGAATGGCTGGAAGAAGAGTTCAAGCAGTCT
CAACTTTCATCATATCTTGAGGTTGAGGTGAGAGTTTATTGATTCCTTGT
CAAAGTTATTTTCAAAAAAGATAGCATATTCATAGTTTATATTTTCTTTT
TTGCATATTATAAATCAAAATTTACTAAAAATGAACACTCAAATCTCTCT
GTTGATTGACAAAAGACAGAAAGAATAATGGACAAAATGTATATATGAAT
GAATTTGGTGTTGAAATGAAAATGTTGGTAATTCGTTGATTGTTTATTGT
TGTTTTAGTATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATGGC
TTTACATCGTCCTTGAGCTTGGTATTACCATCGCCTTTCTGTTTTTGTTG
TTGGTTCGTTTCTTCACACCTGAATACTGCACCGAAAGAGTTCATAAAAG
TGATAGGTAAGCTAAAGGTCTCTTTTTGATCCATCAAAATTTGCTAACGC
AGACACTTTAACGTGTGTTTCTAGGTATATCTTAGAAAGCAATCATTTTA
TAGTCCTTCCATTTTCATTTGAATAATGTCTTTTTACGAGGTTCAATTAT
TCGTCCAGCCATCTCTCAAAGAACGTTAAAAATCTATGATAGTCTTTTGT
CTCAATGAAAGAATAAAAGGGATTTGTTAGCTAGTTTGCAAGCGTTCTGT
TTCATTACTTTAACATACAAAATATTTGATAAAAAGTATACTGGTATAGG
ACTATACCTTAAGCAATTAATCATGAATGATCTAAGTTTTAAAGAGTGAA
GTGATTTTGTTCATGTTGTTATTATTATTTACCTGTGTATGGCACTTAAA
TATCTTCATTGTTTTGTTGTAGATATGCTATGCCGGGATCAATCAATAAC
CAAATAAAGACCCTGTCGACGCACCAGACTTAACGAACACGGGACATGCG
AAAGTCCAGTGTAAAATGAGAATTTTTTTTACCACCGGACAATCTCTACA
CCGGACTTAAGGAAGTCGGATGTCTAGTGTCGGAGAAGGATATTTTTTTC
CACCGGACAATCAAAACACCGGCAAGGTATTATAAGCATTGAGTTTAGTG
GCTTCACTTTTCCTTGTCCGANAATAGCGACACTACAAAAATCGAAACAA
GGTACTATAAACATTGAGTTTAGTGGCTTTACTTTTCCTTGTCCGGGAAA
GGTTAAAGACTTTGCTCTAGCCCTTCAGGCTTTAAAATCACTGAAGCCTC
AAAAGTGACCTACATTAAAAGTTTGAATAGTGGTCAATTGATATTTTGAT
GAATAATATAATGTCAAAAAAGTGAGAGTTTACTACAATGATTACTTTAT
ACATGCTACCCTATCAATAAAGTCAACTCTTGTTTTTAATTTGAAGAAAA
TATTTTAAAATATCTTTTTTTTACAGAAATTCAATCGGCGACCATCTATT
TGCAAAATTTTAACGCCACTATTATGCTGGTATAATTGAAAATGCACATG
TTCACGTATCCTACTAAACACTATCACGTTTCACGATTAGATTGACCAAT
GTTTTTTCAAAGCTTATTCGTTATTGGACTATTATGATGCTGCAATGGAT
TTTTGGTTCAGTATACCTATCCTGTATCTAATTCAATGTCTTGTTATTGG
AATTATTGCTGTTGGAATAACGTTGGTATTGGACAATAATTAAAGACTTT
ATTTCAACTAAAGAGTATTACATATTTCAAATGTATTGCAAAGAAGTAAT
TAATATTGTACAATAGTAATATTGTTAATATTTATAGACAATTATATGAT
TATCTAAAACAAGATTGTTCAAAATTTATGTTAAAAATGAATTTTTTTCA
AACCTTGTTACACATTTTTTTTATAAGCAACTCCATTTTTCGGGCCAGGC
CTGGAGTTGCTAAGGGTTTTTTGAAATCCAGGCTCAAAGTTTGCTTAAAG
ATTTTCAAGCACGTTTTTGCATTTTTAACAATTTTTCAATTTTGAATGGG
CAGTAGAGGCATTTTTCGAAGATTTTCAAGTTGTGTCAAAGTTCTTTTTT
ATTGCTGAGGAAAAAAGTTGCTAATTTGGATTTGAGGCCTCAGGGTTGCT
AAGCAAGGTCCTTATTTTTTGGGCCATATTGAGGCCTGAGCCCTAATCAA
CTCGGTTGCTTATAAAAAAAATGTGTAATCGACCCTGACAAAATGTTGAC
GATTTTTGCACCCATTTTGCCTAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029102-exon-sc0000724-1575043694:110071..110744 | TCONS_00029102-exon-sc0000724-1575043694:110071..110744 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1575043694:109444..109722 | TCONS_00029102-exon-sc0000724-1575043694:109444..109722 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1575043694:108368..109168 | TCONS_00029102-exon-sc0000724-1575043694:108368..109168 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1510915933:110071..110744 | TCONS_00029102-exon-sc0000724-1510915933:110071..110744 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1510915933:109444..109722 | TCONS_00029102-exon-sc0000724-1510915933:109444..109722 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1510915933:108368..109168 | TCONS_00029102-exon-sc0000724-1510915933:108368..109168 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1491911889:110071..110744 | TCONS_00029102-exon-sc0000724-1491911889:110071..110744 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1491911889:109444..109722 | TCONS_00029102-exon-sc0000724-1491911889:109444..109722 | Clytia hemisphaerica | exon |
| TCONS_00029102-exon-sc0000724-1491911889:108368..109168 | TCONS_00029102-exon-sc0000724-1491911889:108368..109168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000724 | supercontig | sc0000724:108368..110744 - |
Blast
The following BLAST results are available for this feature:
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