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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029104 ID=TCONS_00029104|Name=TCONS_00029104|organism=Clytia hemisphaerica|type=transcript|length=1421bp
TTTTTGGACAACCGGGTTATAATGATATGTGTGCGTCGGGATGCGTTGTA
ATTTCATAATGATTTCATATAGCGCGTCGGCGTTATTGCATCAGCCGTTA
TCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTACTGTGGACAATTTTC
TGAAATGTTTGAGTAGATTCGCAGTAGTAGCTGGCTAAGTTGTTTCACAA
ACGTGATGGTTGAATGGCTGGAAGAAGAGTTCAAGCAGTCTCAACTTTCA
TCATATCTTGAGGTTGAGTATCTGGTGTTACATGTTTATAGTATCGAAGA
AGTCCATGGCTTTACATCGTCCTTGAGCTTGGTATTACCATCGCCtttct
gtttttgttgttgGTTCGTTTCTTCACACCTGAATACTGCACCGAAAGAG
TTCATAAAAGTGATAGATATGCTATGCCGGGATCAATCAATAACCAAATA
AAGACCCTGTCGACGCACCAGACTTAACGAACACGGGACATGCGAAAGTC
cagtgtaaaatgagaattttttttaccaccggacaatctctacaccggac
ttaaggaagtcggatgtctagtgtcggagaaggatatttttttccaccgg
acaatcaaaacaccggcaAGaaattcAATCGGCGACCAtctatttgcaaa
attttaacgCCACTATTATGCTGGTATAATTGAAAATGCACATGTTCACG
TATCCTACTAAACACTATCACGTTTCACGATTAGATTGACCAATGTTTTT
TCAAAGCTTATTCGTTATTGGACTATTATGATGCTGCAATGGATTTTTGG
TTCAGTATACCTATCCTGTATCTAATTCAATGTCTTGTTATTGGAATTAT
TGCTGTTGGAATAACGTTGGTATTGGACAATAATTAAAGACTTTATTTCA
ACTAAAGAGTATTACATATTTCAAATGTATTGCAAAGAAGTAATTAATAT
TGTACAATAGTAATATTGTTAATATTTATAGACAATTATATGATTATCTA
AAACAAGattgttcaaaatttatgttaaaaatgaatttttttcaaacctt
gttacacattttttttataagcaactccatttTTCGGGCCAGGCCTGGAG
TTGCTAAGGGTTTTTTGAAATCCAGGCTCAAAGTTTGCTTAAAGATTTTC
AAGCacgtttttgcatttttaacaatttttcaattttgaatgggcAGTAG
AGgcatttttcgaagattttcaaGTTGTGTCAAAGTTCTTTTTTAttgct
gaggaaaaaagttgctAATTTGGATTTGAGGCCTCAGGGTTGCTAAGCAA
GGTCCTTATTTTTTGGGCCATATTGAGGCCTGAGCCCTAATcaactcggt
tgcttataaaaaaaatgtgtaatcgaCCCTGACAAAATGTTGACGATTtt
tgcacccattttgcctaagcc Run BLAST on NCBI transcript from alignment at sc0000724:108368..110785- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029104 ID=TCONS_00029104|Name=TCONS_00029104|organism=Clytia hemisphaerica|type=transcript|length=2418bp|location=Sequence derived from alignment at sc0000724:108368..110785- (Clytia hemisphaerica)
TTTTTGGACAACCGGGTTATAATGATATGTGTGCGTCGGGATGCGTTGTA
ATTTCATAATGATTTCATATAGCGCGTCGGCGTTATTGCATCAGCCGTTA
TCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTACTGTGGACAATTTTC
TGAAATGTTTGAGTAGATTCGCAGTAGTAGCTGGCTAAGTTGTTTCACAA
ACGTGATGGTTGAATGGCTGGAAGAAGAGTTCAAGCAGTCTCAACTTTCA
TCATATCTTGAGGTTGAGGTGAGAGTTTATTGATTCCTTGTCAAAGTTAT
TTTCAAAAAAGATAGCATATTCATAGTTTATATTTTCTTTTTTGCATATT
ATAAATCAAAATTTACTAAAAATGAACACTCAAATCTCTCTGTTGATTGA
CAAAAGACAGAAAGAATAATGGACAAAATGTATATATGAATGAATTTGGT
GTTGAAATGAAAATGTTGGTAATTCGTTGATTGTTTATTGTTGTTTTAGT
ATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATGGCTTTACATCG
TCCTTGAGCTTGGTATTACCATCGCCTTTCTGTTTTTGTTGTTGGTTCGT
TTCTTCACACCTGAATACTGCACCGAAAGAGTTCATAAAAGTGATAGGTA
AGCTAAAGGTCTCTTTTTGATCCATCAAAATTTGCTAACGCAGACACTTT
AACGTGTGTTTCTAGGTATATCTTAGAAAGCAATCATTTTATAGTCCTTC
CATTTTCATTTGAATAATGTCTTTTTACGAGGTTCAATTATTCGTCCAGC
CATCTCTCAAAGAACGTTAAAAATCTATGATAGTCTTTTGTCTCAATGAA
AGAATAAAAGGGATTTGTTAGCTAGTTTGCAAGCGTTCTGTTTCATTACT
TTAACATACAAAATATTTGATAAAAAGTATACTGGTATAGGACTATACCT
TAAGCAATTAATCATGAATGATCTAAGTTTTAAAGAGTGAAGTGATTTTG
TTCATGTTGTTATTATTATTTACCTGTGTATGGCACTTAAATATCTTCAT
TGTTTTGTTGTAGATATGCTATGCCGGGATCAATCAATAACCAAATAAAG
ACCCTGTCGACGCACCAGACTTAACGAACACGGGACATGCGAAAGTCCAG
TGTAAAATGAGAATTTTTTTTACCACCGGACAATCTCTACACCGGACTTA
AGGAAGTCGGATGTCTAGTGTCGGAGAAGGATATTTTTTTCCACCGGACA
ATCAAAACACCGGCAAGGTATTATAAGCATTGAGTTTAGTGGCTTCACTT
TTCCTTGTCCGANAATAGCGACACTACAAAAATCGAAACAAGGTACTATA
AACATTGAGTTTAGTGGCTTTACTTTTCCTTGTCCGGGAAAGGTTAAAGA
CTTTGCTCTAGCCCTTCAGGCTTTAAAATCACTGAAGCCTCAAAAGTGAC
CTACATTAAAAGTTTGAATAGTGGTCAATTGATATTTTGATGAATAATAT
AATGTCAAAAAAGTGAGAGTTTACTACAATGATTACTTTATACATGCTAC
CCTATCAATAAAGTCAACTCTTGTTTTTAATTTGAAGAAAATATTTTAAA
ATATCTTTTTTTTACAGAAATTCAATCGGCGACCATCTATTTGCAAAATT
TTAACGCCACTATTATGCTGGTATAATTGAAAATGCACATGTTCACGTAT
CCTACTAAACACTATCACGTTTCACGATTAGATTGACCAATGTTTTTTCA
AAGCTTATTCGTTATTGGACTATTATGATGCTGCAATGGATTTTTGGTTC
AGTATACCTATCCTGTATCTAATTCAATGTCTTGTTATTGGAATTATTGC
TGTTGGAATAACGTTGGTATTGGACAATAATTAAAGACTTTATTTCAACT
AAAGAGTATTACATATTTCAAATGTATTGCAAAGAAGTAATTAATATTGT
ACAATAGTAATATTGTTAATATTTATAGACAATTATATGATTATCTAAAA
CAAGATTGTTCAAAATTTATGTTAAAAATGAATTTTTTTCAAACCTTGTT
ACACATTTTTTTTATAAGCAACTCCATTTTTCGGGCCAGGCCTGGAGTTG
CTAAGGGTTTTTTGAAATCCAGGCTCAAAGTTTGCTTAAAGATTTTCAAG
CACGTTTTTGCATTTTTAACAATTTTTCAATTTTGAATGGGCAGTAGAGG
CATTTTTCGAAGATTTTCAAGTTGTGTCAAAGTTCTTTTTTATTGCTGAG
GAAAAAAGTTGCTAATTTGGATTTGAGGCCTCAGGGTTGCTAAGCAAGGT
CCTTATTTTTTGGGCCATATTGAGGCCTGAGCCCTAATCAACTCGGTTGC
TTATAAAAAAAATGTGTAATCGACCCTGACAAAATGTTGACGATTTTTGC
ACCCATTTTGCCTAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029104-exon-sc0000724-1575043694:110518..110785 | TCONS_00029104-exon-sc0000724-1575043694:110518..110785 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1575043694:110139..110286 | TCONS_00029104-exon-sc0000724-1575043694:110139..110286 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1575043694:109519..109722 | TCONS_00029104-exon-sc0000724-1575043694:109519..109722 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1575043694:108368..109168 | TCONS_00029104-exon-sc0000724-1575043694:108368..109168 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1510915933:110518..110785 | TCONS_00029104-exon-sc0000724-1510915933:110518..110785 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1510915933:110139..110286 | TCONS_00029104-exon-sc0000724-1510915933:110139..110286 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1510915933:109519..109722 | TCONS_00029104-exon-sc0000724-1510915933:109519..109722 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1510915933:108368..109168 | TCONS_00029104-exon-sc0000724-1510915933:108368..109168 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1491911889:110518..110785 | TCONS_00029104-exon-sc0000724-1491911889:110518..110785 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1491911889:110139..110286 | TCONS_00029104-exon-sc0000724-1491911889:110139..110286 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1491911889:109519..109722 | TCONS_00029104-exon-sc0000724-1491911889:109519..109722 | Clytia hemisphaerica | exon |
| TCONS_00029104-exon-sc0000724-1491911889:108368..109168 | TCONS_00029104-exon-sc0000724-1491911889:108368..109168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000724 | supercontig | sc0000724:108368..110785 - |
Blast
The following BLAST results are available for this feature:
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