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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029111 ID=TCONS_00029111|Name=TCONS_00029111|organism=Clytia hemisphaerica|type=transcript|length=975bp
GATctgaaatgttcttttttaaatatcatTTCAGTATGGACAAAACTCCA
GAGAATTCAACACAAACAAAGGACAAGGAAACCCCTAGCCCAACACTAGA
TGACTTAGAGAGAGCCCATGAGGAAGAACTTCAACCCCCGACAAAGAAAC
AGAGATTTGAACCGTCTTATGTGGATGACACAGAATGGAGTTTGCCGGCC
GACATGGCAGATTATTTCGTTAAACAGTGTTCGAACTTCATTAAACCAAC
TGAGATCGAGGAGCACATTACGTCTTTTTGCCCTCCTCCCAAAAACATTG
GCAAGGTCAAACTACTAGACAGTGCCTTCAAGGAAATTCTTTATGAGACC
GGAAAAAAGGCTATCATTGACCAGGATGAGGTATTAATGAATGTGCAAGC
CCGTATTTGGGACGTCCTAGGTCCCTTCTTTCGATTGTGGTTAGGGATGG
AGACGGACAAGGACAACCTAGAGTCAAGAAGAGTCAACATCAGAGGAGAT
GAGGGAGGGCATGGCAAATGCCTCAACTCTCTATGAGAAAACGGTAACCC
TGATTGGCCAAACGGTCAACAATCTCCTATATCAACGGCACTTCAATGCC
CTCAGTGCTCTTTTTAATGACAAGAAGAAAGCCAAGTCCATGATCAAGGA
ACTCAAAGAATTAATAAACAATGATGATACCTACCTATTTTGGGACAAAT
TTGAGGAGAAAGTGATAAAAACacaaaagatgaaaatcaaaacaaaacaa
gccTTGAAGGACAATAGTAACCAACAACAATCAAGAAGGACCCCCTCTCG
GGGCTGCCTCCTTTCCAACCGATCGAGGGGAAGGGGGCGTGGAGGTTTTA
ACTCATACTATCGATCTTTCAAAACAGACTCAagtaacaacaacaacaac
agtaaCTTTAGAGGCAGAGGTGGTTTTCATCGTGGACGACGTGGTCGTTG
GAATTGAACAACGCATCATTTTAGC Run BLAST on NCBI protein sequence of TCONS_00029111-protein >TCONS_00029111-protein ID=TCONS_00029111-protein|Name=TCONS_00029111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
SEMFFFKYHFSMDKTPENSTQTKDKETPSPTLDDLERAHEEELQPPTKKQ
RFEPSYVDDTEWSLPADMADYFVKQCSNFIKPTEIEEHITSFCPPPKNIG
KVKLLDSAFKEILYETGKKAIIDQDEVLMNVQARIWDVLGPFFRLWLGME
TDKDNLESRRVNIRGDEGGHGKCLNSL Run BLAST on NCBI transcript from alignment at sc0000725:16623..20767- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029111 ID=TCONS_00029111|Name=TCONS_00029111|organism=Clytia hemisphaerica|type=transcript|length=4145bp|location=Sequence derived from alignment at sc0000725:16623..20767- (Clytia hemisphaerica)
GATCTGAAATGTTCTTTTTTAAATATCATTTCAGTATGGACAAAACTCCA
GAGAATTCAACACAAACAAAGGACAAGGAAACCCCTAGCCCAACACTAGA
TGACTTAGAGAGAGCCCATGAGGAAGAACTTCAACCCCCGACAAAGAAAC
AGAGATTTGAACCGTCTTATGTGGATGACACAGAATGGAGTTTGCCGGCC
GACATGGCAGATTATTTCGTTAAACAGTGTTCGAACTTCATTAAACCAAC
TGAGATCGAGGAGCACATTACGTCTTTTTGCCCTCCTCCCAAAAACATTG
GCAAGGTCAAACTACTAGACAGTGCCTTCAAGGAAATTCTTTATGAGACC
GGAAAAAAGGCTATCATTGACCAGGATGAGGTATTAATGAATGTGCAAGC
CCGTATTTGGGACGTCCTAGGTCCCTTCTTTCGATTGTGGTTAGGGATGG
AGACGGACAAGGACAACCTAGAGTCAAGAAGAGTCAACATCAGAGGAGAT
GAGGGAGGGCATGGCAAATGCCTCAACTCTCTATGAGAAAACGGTAACCC
TGATTGGCCAAACGGTCAACAATCTCCTATATCAACGGCACTTCAATGCC
CTCAGTGCTCTTTTTAATGACAAGAAGAAAGCCAAGTCCATGATCAAGGA
ACTCAAAGAATTAATAAACAATGATGATACCTACCTATTTTGGGACAAAT
TTGAGGAGAAAGTGATAAAAACACAAAAGATGAAAATCAAAACAAAACAA
GCCTTGAAGGACAATAGTAACCAACAACAATCAAGAAGGACCCCCTCTCG
GGGCTGCCTCCTTTCCAACCGATCGAGGGGAAGGGGGCGTGGAGGTTTTA
ACTCATACTATCGATCTTTCAAAACAGACTCAAGTAACAACAACAACAAC
AGTAACTTTAGAGGCAGAGGTAAGAACTATTTCTCAACCACTGTTTCAAA
TAGTACTCAACCAAAGTTTAAGGTATGTCCACCCAGGGGTTCGATGCCTA
TTTCAAGAGGATCCAGTCCAGGTCAAGGGATTGGCAGGAAGGTTAGGGTC
CTTTCTAGAAAATTGGAAACAACTCACCAAAGATCCTTCTATTTTAGGCC
TGGTTCAGGGTTATCAGATTCCCTTTATACACAAACAGGGTCCATGGCAA
GGGGTACCTCCAAGGGAGTTAAGAATGAACAAGGTGGAAGATCAGATTGT
TACGGAAGAGGTAGAGAACTTGTTAAAGAAAGGGGCGATAGAAGTGACCT
CACCCTGCCCAGGCCAGGTTTTAAGCACTTTGTTTACAGTGAAGAAGAAA
GACAAAGGTTACAGACCAGTCATCAATTTAAAATTTGTAAACTCACATAT
CCCCTATCAACACTTCAAGATGGAGGGTTTGCATCTCATAAAGGATCTCT
TAAACAAGGACGATCTAATGATAAAACTGGATTTAAAGGATGCATATTTC
AGCGTTCCATTAGGTCCAGAGTCCAGGAAATTTGTCAGGTTCGAGTGGAA
AGGCAAACTTTACCAATTTCTGTGTATGTGTTTCGGGCTTGGTCCAGCTC
CAAGACTTTTTACAAAAGTTCCTGTGACTATTTTGAGGAAACTCAATATA
ACATTCTAGTAATGGGCAGCTCTATGTCGGAAATTCTGATGGCCAGGGAC
ACTTTGATTTTTCTCCTTCCGAGTCTGGGTTTCGTGATAAATATTCAGAA
GTCTCACTTACAACCATGCCAGGAGATAGAGTTTTTGGGGGTGATAGTCA
ACTCCTCCAAGATGGAATTGACTTTACCATCATATAAAGTAGAAAAAATC
CTAAATCTATGCGAAAAACTCTTGTCTCAGAAGGTGGTCATTATTTTGGA
GTTAACAAAACTTCTAGGGAAGCTAACTTCTTCAGCAGTAGCAGTGTTAG
CAGCGCCTCTACACTACAGAAAGATACAAAGGAGTCAAATAAATGCCCTT
TGGAAGTCTTAGTCGTATCACACCAACATTGTACTCCCCGAGGAGGTGAA
GTTAGAACTGAAATGGTGGTTGGAAAACCTGAGACTCTCAAACGGGAAGT
CCTTGTTGACACCAGAACCAGACCTAGTTATGTCAACAGATGCCTCAAAG
AAGGGCTGGGGAGTGGACTGTCAAGGTCAAAGGACAGGAGGCCCTTGGAA
CCAGGAGGAGAGTGGCCTTCACATAAACATTTTAGAACTGAAAGCAGCCC
TCTTGGGGATAAAAATTTTTCAATGAACCAACCAGGGATTCGCATATGGA
CAATACATCAGCCCTTTCTTACATTGTGAAGATGGGGAGGGACACAGAAC
AAAGTGATGATAGACTTGAGCCAGAAGTTATGGGATTACTTGATATCCAA
GGGGATCACGATTACTGTAGAGTATCTCCCAGGGAAGTTAAATGAAACAG
CAGATTGGGAGTCAAGGAATGTTCAGGATTCCAGCAAATGGAGATTAGAC
CGGAAAGTTTTCAAAGCAATTTGTCAAGCTTTCGGGATACCTCAGATAGA
TCTGTTTGCGTCAAGGGTGTCCCATCAAGTTCCTTGTTACGTGTCATGAA
AACCAGACCCCTTTTGTCAAGCGTGGATNTAGATCTGTTTGCGTCAAGGG
TGTCCCATCAAGTTCCTTGTTACGTGTCATGGAAACCAGACCCCTTTTGT
CAAAGCGTGGATGCCTTTCAGACAAGTTGGGAAAACAACCTAAATTATGC
CTTCCCACCGTTTTGTCTCATCGGTCGGGTTCTGGACAAATTAGCAAGGG
AGCCAGCAGAAATGATTCTGGTGACACCTCTATGGCAGGGACAACCTTGG
TATCCCTGACTCTTACGGATGTGTGTTCAACCGCCTCTTTTGATTCCTTC
GTTTCCAAGCCTGTTGTTGGGCCCTCAAGCTCAACTGCATCCCCTGATGA
GAGAAGGGTCTCTAACTCTAGCGGTCTGGCGTGTTTCAGGAAAACCTTGG
AAACAGAAGGCATTCCAGGCAAAGCAGCAGTCCTTATATCAAATTCCAGG
AGAAAAGGTTCCATCTCTCATTATGAATCGGCCTGGAGAAAATGGGCTAG
TGAACGACAAGGTGATCCCACTTCATGTTCTTTGTCTCTGATTCTAGAAT
TTCTGGCAGATTTGTTTGAGAAGAATTTGGAGTACAGCACTATTTGTGGA
TATAGGTCAGCAATTTCAGCTTATCATAATCCAATTGAGAGGCCGTCATC
CTAGAGTTAGTGCCCTGTTGACGGGTGTCTTTAATTTAAGGCCACCCCTG
CCAAAGTATACGTTTGTATGGGTGTCTCTGATGTTTTGAATTACATTAGA
CAAATGCCGGTTGATGACTCGATCTCAAATAAAGACTTAACCCTAAAACT
GTCATCGCTTTTGGCTATCGCATCAGCTAGTAGAGCGTCTGAGATCTGTT
ATCTAGACATTAGGTATTTGGTTAAAGGGAACGATTCTTATGAGTTTCAC
TTCGTTAAACTCACCAAGTCCTGGAGGAGAGGCAAACCAAGACCAAAAAT
ATGTTTTCATTTCTTAACAGAAGAACCAGAACTTTGTATTTGTAAGACTA
TAGACCAGTATTTGACAAGATCAAAAGAATGGAGATCAGATCAGGATACC
CAACTTTTGTTAAGTCATATAGAACCCCATGGCCCAGTGGCAGTGGGGAC
TGTTTCTAGATGGCTAATGGAACTGTTAGGTTTTTCTGGTCACTCTACTA
GACACGCTTCTACTTCCGAAGCTAAATTAGTTGGGATACCCTTAAAAGAA
ATTGTCAAGAGGGGTCAATGGTCGTCAGATTCTATGTTTAGGAACAGATA
CTGCCAGGAGGTTAAGGTTACAGAAAGGTCAAGGGCATACGAAAATAAAC
TGTTTAAGAAAGCTTTGAACAAGGAGGAAGTGACGGCTTCTAGTTATGGA
TACAAGTATGTCGCTTAGCAGGATTAGATCTAGCGAGATTTCACGCTGTG
AAATTTGGAATTGTGCAAGGGCGCGAAGCGCCCGCAGTGCAATTCCGATT
TTACTAGTGAAATCGAAGCTAAAGATCTAATCCTGTCCTCCCTCCCTACC
CTACTTATCATAACCATTATTATGTTTCATTTCCTTCAGGTGGTTTTCAT
CGTGGACGACGTGGTCGTTGGAATTGAACAACGCATCATTTTAGC Coding sequence (CDS) from alignment at sc0000725:16623..20767- >TCONS_00029111 ID=TCONS_00029111|Name=TCONS_00029111|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at sc0000725:16623..20767- (Clytia hemisphaerica)
TCTGAAATGTTCTTTTTTAAATATCATTTCAGTATGGACAAAACTCCAGA
GAATTCAACACAAACAAAGGACAAGGAAACCCCTAGCCCAACACTAGATG
ACTTAGAGAGAGCCCATGAGGAAGAACTTCAACCCCCGACAAAGAAACAG
AGATTTGAACCGTCTTATGTGGATGACACAGAATGGAGTTTGCCGGCCGA
CATGGCAGATTATTTCGTTAAACAGTGTTCGAACTTCATTAAACCAACTG
AGATCGAGGAGCACATTACGTCTTTTTGCCCTCCTCCCAAAAACATTGGC
AAGGTCAAACTACTAGACAGTGCCTTCAAGGAAATTCTTTATGAGACCGG
AAAAAAGGCTATCATTGACCAGGATGAGGTATTAATGAATGTGCAAGCCC
GTATTTGGGACGTCCTAGGTCCCTTCTTTCGATTGTGGTTAGGGATGGAG
ACGGACAAGGACAACCTAGAGTCAAGAAGAGTCAACATCAGAGGAGATGA
GGGAGGGCATGGCAAATGCCTCAACTCTCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029111-exon-sc0000725-1575043694:19849..20767 | TCONS_00029111-exon-sc0000725-1575043694:19849..20767 | Clytia hemisphaerica | exon |
| TCONS_00029111-exon-sc0000725-1575043694:16623..16678 | TCONS_00029111-exon-sc0000725-1575043694:16623..16678 | Clytia hemisphaerica | exon |
| TCONS_00029111-exon-sc0000725-1510915933:19849..20767 | TCONS_00029111-exon-sc0000725-1510915933:19849..20767 | Clytia hemisphaerica | exon |
| TCONS_00029111-exon-sc0000725-1510915933:16623..16678 | TCONS_00029111-exon-sc0000725-1510915933:16623..16678 | Clytia hemisphaerica | exon |
| TCONS_00029111-exon-sc0000725-1491911889:19849..20767 | TCONS_00029111-exon-sc0000725-1491911889:19849..20767 | Clytia hemisphaerica | exon |
| TCONS_00029111-exon-sc0000725-1491911889:16623..16678 | TCONS_00029111-exon-sc0000725-1491911889:16623..16678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000725 | supercontig | sc0000725:16623..20767 - |
Blast
The following BLAST results are available for this feature:
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