TCONS_00029115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029115
Unique NameTCONS_00029115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029115 ID=TCONS_00029115|Name=TCONS_00029115|organism=Clytia hemisphaerica|type=transcript|length=236bp
tccataattttaCCTCTGGACAAATCAACCCCCTGGGCCTGGGTATGAct
gtttttttgcaattttttcaagaactggGCGGGATGGTTGGTATTTTAAA
GGTAAATTGGGTGTGTCAAGTATGTGCAAAATTCATTCTCTCACagggtc
aattttcaatttttggcttgGACATACCCATCACCTACCGTGAATTCGGG
tgcatgcatagccctcaaatgaatgacctggctggt
Run BLAST on NCBI

transcript from alignment at sc0000725:13017..13252

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029115 ID=TCONS_00029115|Name=TCONS_00029115|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at sc0000725:13017..13252 (Clytia hemisphaerica)
accagccaggtcattcatttgagggctatgcatgcaCCCGAATTCACGGT
AGGTGATGGGTATGTCcaagccaaaaattgaaaattgaccctGTGAGAGA
ATGAATTTTGCACATACTTGACACACCCAATTTACCTTTAAAATACCAAC
CATCCCGCccagttcttgaaaaaattgcaaaaaaacagTCATACCCAGGC
CCAGGGGGTTGATTTGTCCAGAGGtaaaattatgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016556XLOC_016556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029115-exon-sc0000725-1491911889:13017..13252TCONS_00029115-exon-sc0000725-1491911889:13017..13252Clytia hemisphaericaexon
TCONS_00029115-exon-sc0000725-1510915933:13017..13252TCONS_00029115-exon-sc0000725-1510915933:13017..13252Clytia hemisphaericaexon
TCONS_00029115-exon-sc0000725-1575043694:13017..13252TCONS_00029115-exon-sc0000725-1575043694:13017..13252Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000725supercontigsc0000725:13017..13252 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.08613	0	10.349	8.17788	2.46657	5.77293	1.61754	5.00637	0	3.39421	1.91393	0	1.6341	0	0	2.21428	0	3.20118	0	1.35716	0	2.99983	1.02992	0.919177	0	1.40377	1.06471	1.08477
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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