TCONS_00029121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029121
Unique NameTCONS_00029121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029121 ID=TCONS_00029121|Name=TCONS_00029121|organism=Clytia hemisphaerica|type=transcript|length=457bp
GACCTCCGTCCAATTGGAAGCTTGGCCATCAAGAACCACCCGCTCCAACC
TACctgagagaaaattttgaagtaaTGAGAGAAGGGGCCCGGTCACacca
tatgacttaagtttgaaaattagCCCATCATGCCAAACTCtgtcaaaagc
tttggaaatatcaagaaatacTCCACAAGTATCTAGAGGTGGATTTGAAT
CGAAACCTACCAGGATGTCGTGCGTTATGGACAAAAGCTGGGACACACAA
GAGTCACCCTTGCGGAAACCAGGCTGGGAATTAGTAAAGAGATTGTTGCT
TTTAAAATAGGtgtaaacatttttcaaagattttaccaaaaataggTAGA
AGAGATACTGGCCTGTAGTTTTTTAACACACTCTTGTcccctttgttttt
ataaacaggGACAACATTTGCTTTTTTCCAATTCGATGGAAAAACACAAG
AATCTAG
Run BLAST on NCBI

transcript from alignment at sc0000725:66395..66851

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029121 ID=TCONS_00029121|Name=TCONS_00029121|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0000725:66395..66851 (Clytia hemisphaerica)
CTAGATTCTTGTGTTTTTCCATCGAATTGGAAAAAAGCAAATGTTGTCcc
tgtttataaaaacaaaggggACAAGAGTGTGTTAAAAAACTACAGGCCAG
TATCTCTTCTAcctatttttggtaaaatctttgaaaaatgtttacaCCTA
TTTTAAAAGCAACAATCTCTTTACTAATTCCCAGCCTGGTTTCCGCAAGG
GTGACTCTTGTGTGTCCCAGCTTTTGTCCATAACGCACGACATCCTGGTA
GGTTTCGATTCAAATCCACCTCTAGATACTTGTGGAgtatttcttgatat
ttccaaagcttttgacaGAGTTTGGCATGATGGGctaattttcaaactta
agtcatatggtGTGACCGGGCCCCTTCTCTCAttacttcaaaattttctc
tcagGTAGGTTGGAGCGGGTGGTTCTTGATGGCCAAGCTTCCAATTGGAC
GGAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016562XLOC_016562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029121-exon-sc0000725-1491911889:66395..66851TCONS_00029121-exon-sc0000725-1491911889:66395..66851Clytia hemisphaericaexon
TCONS_00029121-exon-sc0000725-1510915933:66395..66851TCONS_00029121-exon-sc0000725-1510915933:66395..66851Clytia hemisphaericaexon
TCONS_00029121-exon-sc0000725-1575043694:66395..66851TCONS_00029121-exon-sc0000725-1575043694:66395..66851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000725supercontigsc0000725:66395..66851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47553	1.48231	0.64055	0.931113	0.695679	0.551298	0.600338	0.768006	0.12055	0.658555	0	0.285822	0.713752	1.6458	1.79829	1.14216	1.97005	1.34481	0.433248	1.32342	2.23754	2.79092	1.0519	2.27482	0.153592	0	1.77063	1.01022	0.470973	1.13985
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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