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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029123 ID=TCONS_00029123|Name=TCONS_00029123|organism=Clytia hemisphaerica|type=transcript|length=1318bp
ATAACATTGAGTGTTTTCTTCAACTTATTCTGGTTAACGCAACTGGAAAT
TCCACTTCAAATATATCTACTATAATACAAATTAATAACATAATTCtaca
attttctcaaaaacataaAGCGCCTCTGCCCAACTTCTAGGAGGATAGGG
GAGCCGTTCAGTTTCTACAACAcgagtaaaaaaatcaaataaaatatcAT
CTTTCTCGTCTTCAATAACATTTGCAgcttcaacaaaaatatttctttga
tcaAGAGCACTTTGCAGAAGATCATTACTGACTGTGagctttttattgtt
aaaattcAAAGGGTCGGGTACGTAAAAAAGAACATCCGGTATCCCAGAAA
CAGTATCATGGCGAGATTTCCTAATGTAATGTGTATTCCATTCATGCACA
AACTCGTCCAGCTGATTTTGTAGGAACTCTGCATAAACAAACCAAACACA
TTCTGTATGAATTCTGTTGCCTACTTCTAGGATGCCATCCGCACACATTT
GCTTGAAATAGTCGATAATCCaatatgtaaaagatttcttcaaGTGTGAC
CACCAACATTCAATCCGTTGGTTTGCTGTTGAGGTTCCATAGAAGTGAGC
ATTTTCATTTTGGTGAAAGTAGCACTGAAGTGCCGCTTTAATTCCATTTT
CTGTACCACAATCTGTTCTCAAAAACTTTGGGCAGAAGCCCATTTGTCTA
ACAATACTCAAATAATGAAAAGCAGGAATAATTGGATTGTTATTTGATCT
AACAACTTTTAGCCAtaagattttccttgaaaatccATCAATACATCCGT
GTATCGGAAGTCCATAAGGTTTTAACTTATCGTATCCATCCGAATGCCAA
CAAAAGTTCGGACCAGGCGATGAATAACGTCTCCGGTTGAGTCTCCTTCT
GCGTCTCAAGGATGTACCTATTGGGTCAACTTGGCGTAAAACTTCCATAA
CTGTATCTCTTTTTACCTTTATACCATATGATCTTCTGAGATGGTTCCAC
ATTCCTCTATAACCTACCAACGAATTTGGGCCTTCTATCTCCCTTTGAAT
TATAGCTGTTAGCTCTTGATATGAAACGTTTGATGATCGCCGGCTCAAAC
CAAAGCGCTTTAGTCGTCTTTTCAATGTACTCAAACTCATTGAGATACCA
TGGTAAGTACTCAAAAAAAGTAGAATATGTTCATTTGAGTAATATCGAGC
GAAGTAAAGCTTGATTGCCTCTTCTTCGTCAAGTAAATGCGAAGGAGGCT
GGCTTTGATATAATTGTTCAATCTTTTCTCCACAAACAGTACAAAAAAAA
TGTCTATCGTTTAATCTN Run BLAST on NCBI protein sequence of TCONS_00029123-protein >TCONS_00029123-protein ID=TCONS_00029123-protein|Name=TCONS_00029123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
RLNDRHFFCTVCGEKIEQLYQSQPPSHLLDEEEAIKLYFARYYSNEHILL
FLSTYHGISMSLSTLKRRLKRFGLSRRSSNVSYQELTAIIQREIEGPNSL
VGYRGMWNHLRRSYGIKVKRDTVMEVLRQVDPIGTSLRRRRRLNRRRYSS
PGPNFCWHSDGYDKLKPYGLPIHGCIDGFSRKILWLKVVRSNNNPIIPAF
HYLSIVRQMGFCPKFLRTDCGTENGIKAALQCYFHQNENAHFYGTSTANQ
RIECWWSHLKKSFTYWIIDYFKQMCADGILEVGNRIHTECVWFVYAEFLQ
NQLDEFVHEWNTHYIRKSRHDTVSGIPDVLFYVPDPLNFNNKKLTVSNDL
LQSALDQRNIFVEAANVIEDEKDDILFDFFTRVVETERLPYPPRSWAEAL
YVFEKIVELCY Run BLAST on NCBI transcript from alignment at sc0000725:102323..103640 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029123 ID=TCONS_00029123|Name=TCONS_00029123|organism=Clytia hemisphaerica|type=transcript|length=1318bp|location=Sequence derived from alignment at sc0000725:102323..103640 (Clytia hemisphaerica)
NAGATTAAACGATAGACATTTTTTTTGTACTGTTTGTGGAGAAAAGATTG
AACAATTATATCAAAGCCAGCCTCCTTCGCATTTACTTGACGAAGAAGAG
GCAATCAAGCTTTACTTCGCTCGATATTACTCAAATGAACATATTCTACT
TTTTTTGAGTACTTACCATGGTATCTCAATGAGTTTGAGTACATTGAAAA
GACGACTAAAGCGCTTTGGTTTGAGCCGGCGATCATCAAACGTTTCATAT
CAAGAGCTAACAGCTATAATTCAAAGGGAGATAGAAGGCCCAAATTCGTT
GGTAGGTTATAGAGGAATGTGGAACCATCTCAGAAGATCATATGGTATAA
AGGTAAAAAGAGATACAGTTATGGAAGTTTTACGCCAAGTTGACCCAATA
GGTACATCCTTGAGACGCAGAAGGAGACTCAACCGGAGACGTTATTCATC
GCCTGGTCCGAACTTTTGTTGGCATTCGGATGGATACGATAAGTTAAAAC
CTTATGGACTTCCGATACACGGATGTATTGATggattttcaaggaaaatc
ttaTGGCTAAAAGTTGTTAGATCAAATAACAATCCAATTATTCCTGCTTT
TCATTATTTGAGTATTGTTAGACAAATGGGCTTCTGCCCAAAGTTTTTGA
GAACAGATTGTGGTACAGAAAATGGAATTAAAGCGGCACTTCAGTGCTAC
TTTCACCAAAATGAAAATGCTCACTTCTATGGAACCTCAACAGCAAACCA
ACGGATTGAATGTTGGTGGTCACACttgaagaaatcttttacatattGGA
TTATCGACTATTTCAAGCAAATGTGTGCGGATGGCATCCTAGAAGTAGGC
AACAGAATTCATACAGAATGTGTTTGGTTTGTTTATGCAGAGTTCCTACA
AAATCAGCTGGACGAGTTTGTGCATGAATGGAATACACATTACATTAGGA
AATCTCGCCATGATACTGTTTCTGGGATACCGGATGTTCTTTTTTACGTA
CCCGACCCTTTgaattttaacaataaaaagctCACAGTCAGTAATGATCT
TCTGCAAAGTGCTCTtgatcaaagaaatatttttgttgaagcTGCAAATG
TTATTGAAGACGAGAAAGATgatattttatttgatttttttactcgTGTT
GTAGAAACTGAACGGCTCCCCTATCCTCCTAGAAGTTGGGCAGAGGCGCT
ttatgtttttgagaaaattgtaGAATTATGTTATTAATTTGTATTATAGT
AGATATATTTGAAGTGGAATTTCCAGTTGCGTTAACCAGAATAAGTTGAA
GAAAACACTCAATGTTAT Coding sequence (CDS) from alignment at sc0000725:102323..103640 >TCONS_00029123 ID=TCONS_00029123|Name=TCONS_00029123|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000725:102323..103640 (Clytia hemisphaerica)
AGATTAAACGATAGACATTTTTTTTGTACTGTTTGTGGAGAAAAGATTGA
ACAATTATATCAAAGCCAGCCTCCTTCGCATTTACTTGACGAAGAAGAGG
CAATCAAGCTTTACTTCGCTCGATATTACTCAAATGAACATATTCTACTT
TTTTTGAGTACTTACCATGGTATCTCAATGAGTTTGAGTACATTGAAAAG
ACGACTAAAGCGCTTTGGTTTGAGCCGGCGATCATCAAACGTTTCATATC
AAGAGCTAACAGCTATAATTCAAAGGGAGATAGAAGGCCCAAATTCGTTG
GTAGGTTATAGAGGAATGTGGAACCATCTCAGAAGATCATATGGTATAAA
GGTAAAAAGAGATACAGTTATGGAAGTTTTACGCCAAGTTGACCCAATAG
GTACATCCTTGAGACGCAGAAGGAGACTCAACCGGAGACGTTATTCATCG
CCTGGTCCGAACTTTTGTTGGCATTCGGATGGATACGATAAGTTAAAACC
TTATGGACTTCCGATACACGGATGTATTGATggattttcaaggaaaatct
taTGGCTAAAAGTTGTTAGATCAAATAACAATCCAATTATTCCTGCTTTT
CATTATTTGAGTATTGTTAGACAAATGGGCTTCTGCCCAAAGTTTTTGAG
AACAGATTGTGGTACAGAAAATGGAATTAAAGCGGCACTTCAGTGCTACT
TTCACCAAAATGAAAATGCTCACTTCTATGGAACCTCAACAGCAAACCAA
CGGATTGAATGTTGGTGGTCACACttgaagaaatcttttacatattGGAT
TATCGACTATTTCAAGCAAATGTGTGCGGATGGCATCCTAGAAGTAGGCA
ACAGAATTCATACAGAATGTGTTTGGTTTGTTTATGCAGAGTTCCTACAA
AATCAGCTGGACGAGTTTGTGCATGAATGGAATACACATTACATTAGGAA
ATCTCGCCATGATACTGTTTCTGGGATACCGGATGTTCTTTTTTACGTAC
CCGACCCTTTgaattttaacaataaaaagctCACAGTCAGTAATGATCTT
CTGCAAAGTGCTCTtgatcaaagaaatatttttgttgaagcTGCAAATGT
TATTGAAGACGAGAAAGATgatattttatttgatttttttactcgTGTTG
TAGAAACTGAACGGCTCCCCTATCCTCCTAGAAGTTGGGCAGAGGCGCTt
tatgtttttgagaaaattgtaGAATTATGTTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029123-exon-sc0000725-1491911889:102323..103640 | TCONS_00029123-exon-sc0000725-1491911889:102323..103640 | Clytia hemisphaerica | exon |
| TCONS_00029123-exon-sc0000725-1510915933:102323..103640 | TCONS_00029123-exon-sc0000725-1510915933:102323..103640 | Clytia hemisphaerica | exon |
| TCONS_00029123-exon-sc0000725-1575043694:102323..103640 | TCONS_00029123-exon-sc0000725-1575043694:102323..103640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000725 | supercontig | sc0000725:102323..103640 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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