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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029125 ID=TCONS_00029125|Name=TCONS_00029125|organism=Clytia hemisphaerica|type=transcript|length=1125bp
AAGCCAGCAGCAAAAAAGTCAACTGCTTCGACGAACACCACTGTTGTAGT
AGCATGTAAACAACCCAAACCAAAACCAACAACCTCACCAAGACTGAGAA
CAGTCAATGTTGGTAGAGTGGCATACAATGAATTTGGTGATTTCAAACCT
TTAAGAGGAAAACGCCTTCCAGTCACAGTCAAAGAAAATGCTGATTATTT
TGAGTTAAAGCGAGAATCGATGAAAAAACACTCTGATAATTTCCAGGACT
TTTGTGGTCTGGAAGCCCACAAATTGTTGTACTCTGATTACAAGGAAATG
ATCACAATCCCTGGCTCTATCGAAGACTTTCGCCTTgacaaatacaaaga
atactTGGGTAAATCTTATTCGCAATTATTATTCTACTTGTGCTCGGAAA
TAGACTTTAACACCTTCAAAGGGATTGACAATGATAAAAACAGTGACATT
GAAATGGAAGAGTCACTCTTTTCAGAACTTGAGTCTAACAGTGGCCATCA
CCAAATCATTACAGGGATTTCAACCACAACTACTGAAGCTAATGATCCAG
CATTGGTCGTTTTCACCACCACCAGTTCATCGCTGCCTCTAGATCTATCG
ACCAATTCCATTAATGCTTTAACAACCAGTCCATCACATTTTGCTTTTAT
GTCAACATCACTTCCTAGTTCTACCCAAAATCTATCTCCACCTGTTACAA
CCGTGAACCCACCAACACCACCACCAATAATAGCCCACCCACTATTATCC
ATTAAAGCACATGCATCGAGTGGCATTCCTACCATTCCATCTATTGTTAT
TCCTGATGATGTTGATGAACTACCACTAACTGATCAGGACAATCTTAACA
ATCGTTCAACCCTCAAGGAAAAACTTGACACCATTCAAAGTGCTGTTTCC
AGTAATCCTACTTTTGATTTAGAGATAAGAAGAAAGAGGGCTTGGCTGGA
CACTCTCCAAAAATTGAAACGGGCTTTCTCAAAGGGGGTTCGTCCCATAA
CAGTCAAGTTTGTCGGGGAAGAAGCTGATGATTTGGGAGGTCCACTCAGA
GAATTTTACACAGTTGTTTTCGAAGATgttaaaaaacatttaatgtGTTC
AGGTGGTCAtacttttacattttta Run BLAST on NCBI protein sequence of TCONS_00029125-protein >TCONS_00029125-protein ID=TCONS_00029125-protein|Name=TCONS_00029125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
KPAAKKSTASTNTTVVVACKQPKPKPTTSPRLRTVNVGRVAYNEFGDFKP
LRGKRLPVTVKENADYFELKRESMKKHSDNFQDFCGLEAHKLLYSDYKEM
ITIPGSIEDFRLDKYKEYLGKSYSQLLFYLCSEIDFNTFKGIDNDKNSDI
EMEESLFSELESNSGHHQIITGISTTTTEANDPALVVFTTTSSSLPLDLS
TNSINALTTSPSHFAFMSTSLPSSTQNLSPPVTTVNPPTPPPIIAHPLLS
IKAHASSGIPTIPSIVIPDDVDELPLTDQDNLNNRSTLKEKLDTIQSAVS
SNPTFDLEIRRKRAWLDTLQKLKRAFSKGVRPITVKFVGEEADDLGGPLR
EFYTVVFEDVKKHLMCSGGHTFTFL Run BLAST on NCBI transcript from alignment at sc0000725:112837..113961 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029125 ID=TCONS_00029125|Name=TCONS_00029125|organism=Clytia hemisphaerica|type=transcript|length=1125bp|location=Sequence derived from alignment at sc0000725:112837..113961 (Clytia hemisphaerica)
taaaaatgtaaaagtaTGACCACCTGAACacattaaatgttttttaacAT
CTTCGAAAACAACTGTGTAAAATTCTCTGAGTGGACCTCCCAAATCATCA
GCTTCTTCCCCGACAAACTTGACTGTTATGGGACGAACCCCCTTTGAGAA
AGCCCGTTTCAATTTTTGGAGAGTGTCCAGCCAAGCCCTCTTTCTTCTTA
TCTCTAAATCAAAAGTAGGATTACTGGAAACAGCACTTTGAATGGTGTCA
AGTTTTTCCTTGAGGGTTGAACGATTGTTAAGATTGTCCTGATCAGTTAG
TGGTAGTTCATCAACATCATCAGGAATAACAATAGATGGAATGGTAGGAA
TGCCACTCGATGCATGTGCTTTAATGGATAATAGTGGGTGGGCTATTATT
GGTGGTGGTGTTGGTGGGTTCACGGTTGTAACAGGTGGAGATAGATTTTG
GGTAGAACTAGGAAGTGATGTTGACATAAAAGCAAAATGTGATGGACTGG
TTGTTAAAGCATTAATGGAATTGGTCGATAGATCTAGAGGCAGCGATGAA
CTGGTGGTGGTGAAAACGACCAATGCTGGATCATTAGCTTCAGTAGTTGT
GGTTGAAATCCCTGTAATGATTTGGTGATGGCCACTGTTAGACTCAAGTT
CTGAAAAGAGTGACTCTTCCATTTCAATGTCACTGTTTTTATCATTGTCA
ATCCCTTTGAAGGTGTTAAAGTCTATTTCCGAGCACAAGTAGAATAATAA
TTGCGAATAAGATTTACCCAagtattctttgtatttgtcAAGGCGAAAGT
CTTCGATAGAGCCAGGGATTGTGATCATTTCCTTGTAATCAGAGTACAAC
AATTTGTGGGCTTCCAGACCACAAAAGTCCTGGAAATTATCAGAGTGTTT
TTTCATCGATTCTCGCTTTAACTCAAAATAATCAGCATTTTCTTTGACTG
TGACTGGAAGGCGTTTTCCTCTTAAAGGTTTGAAATCACCAAATTCATTG
TATGCCACTCTACCAACATTGACTGTTCTCAGTCTTGGTGAGGTTGTTGG
TTTTGGTTTGGGTTGTTTACATGCTACTACAACAGTGGTGTTCGTCGAAG
CAGTTGACTTTTTTGCTGCTGGCTT Coding sequence (CDS) from alignment at sc0000725:112837..113961 >TCONS_00029125 ID=TCONS_00029125|Name=TCONS_00029125|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0000725:112837..113961 (Clytia hemisphaerica)
taaaaatgtaaaagtaTGACCACCTGAACacattaaatgttttttaacAT
CTTCGAAAACAACTGTGTAAAATTCTCTGAGTGGACCTCCCAAATCATCA
GCTTCTTCCCCGACAAACTTGACTGTTATGGGACGAACCCCCTTTGAGAA
AGCCCGTTTCAATTTTTGGAGAGTGTCCAGCCAAGCCCTCTTTCTTCTTA
TCTCTAAATCAAAAGTAGGATTACTGGAAACAGCACTTTGAATGGTGTCA
AGTTTTTCCTTGAGGGTTGAACGATTGTTAAGATTGTCCTGATCAGTTAG
TGGTAGTTCATCAACATCATCAGGAATAACAATAGATGGAATGGTAGGAA
TGCCACTCGATGCATGTGCTTTAATGGATAATAGTGGGTGGGCTATTATT
GGTGGTGGTGTTGGTGGGTTCACGGTTGTAACAGGTGGAGATAGATTTTG
GGTAGAACTAGGAAGTGATGTTGACATAAAAGCAAAATGTGATGGACTGG
TTGTTAAAGCATTAATGGAATTGGTCGATAGATCTAGAGGCAGCGATGAA
CTGGTGGTGGTGAAAACGACCAATGCTGGATCATTAGCTTCAGTAGTTGT
GGTTGAAATCCCTGTAATGATTTGGTGATGGCCACTGTTAGACTCAAGTT
CTGAAAAGAGTGACTCTTCCATTTCAATGTCACTGTTTTTATCATTGTCA
ATCCCTTTGAAGGTGTTAAAGTCTATTTCCGAGCACAAGTAGAATAATAA
TTGCGAATAAGATTTACCCAagtattctttgtatttgtcAAGGCGAAAGT
CTTCGATAGAGCCAGGGATTGTGATCATTTCCTTGTAATCAGAGTACAAC
AATTTGTGGGCTTCCAGACCACAAAAGTCCTGGAAATTATCAGAGTGTTT
TTTCATCGATTCTCGCTTTAACTCAAAATAATCAGCATTTTCTTTGACTG
TGACTGGAAGGCGTTTTCCTCTTAAAGGTTTGAAATCACCAAATTCATTG
TATGCCACTCTACCAACATTGACTGTTCTCAGTCTTGGTGAGGTTGTTGG
TTTTGGTTTGGGTTGTTTACATGCTACTACAACAGTGGTGTTCGTCGAAG
CAGTTGACTTTTTTGCTGCTGGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029125-exon-sc0000725-1491911889:112837..113961 | TCONS_00029125-exon-sc0000725-1491911889:112837..113961 | Clytia hemisphaerica | exon |
| TCONS_00029125-exon-sc0000725-1510915933:112837..113961 | TCONS_00029125-exon-sc0000725-1510915933:112837..113961 | Clytia hemisphaerica | exon |
| TCONS_00029125-exon-sc0000725-1575043694:112837..113961 | TCONS_00029125-exon-sc0000725-1575043694:112837..113961 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000725 | supercontig | sc0000725:112837..113961 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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