TCONS_00029126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029126
Unique NameTCONS_00029126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029126 ID=TCONS_00029126|Name=TCONS_00029126|organism=Clytia hemisphaerica|type=transcript|length=659bp
CCATAACCAACTCAATCTTTAGAAGCCATACAAGACTGCTCTCAATACTT
GGTACGTTGTCCACGATTTTTAATAACAGCCTCTATGCGCTTATCCATcg
ataaaataattttatccTTTGGGTAGTTCAATCGTATTTCCTTAACACGT
GCGGAAAATTCTTCTATGGTTTCACTGGTGATTTGTTTTTCCAATGCTTC
TTCACGGAGGGCTTTTCCAGCaagatgaaaaaagttttcgatGGGGTTCA
AATCTGGCGAACAGGCTGGGATGCAGAATAGATGGGCACCAAGTCGTTCC
AAAGCACGCTTACCTCTTTTAGAATTTTGCACTGGACAGCCATCTTGCAA
CACTCTTTTCGACTTGGGGTTAATTGATAATGTGAAGGCAAGTGGAAACT
GTTTCCGCACCATTGTTGCGAAACCCCTCCCGCATAATCGGTTTTCATAT
TGTTGGGGCCCTGGCCTGGTCCAAGGGATTTGTCTTATAGATAAAACCAA
CTGCATCCAAATAGAAGCTTGTTCCTTTCTTCCAAAATTCCAAACCTAGT
CCAAACTTCCTTAACCGTTTTGCAAATTTCAGCCGAGTAGCAAGATCCTT
CTGCGATATCCATAACCCATCTGCCTCAAATGACGCCTAAATGTTTGGTT
TGAGGCCGC
Run BLAST on NCBI

protein sequence of TCONS_00029126-protein

>TCONS_00029126-protein ID=TCONS_00029126-protein|Name=TCONS_00029126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MQLVLSIRQIPWTRPGPQQYENRLCGRGFATMVRKQFPLAFTLSINPKSK
RVLQDGCPVQNSKRGKRALERLGAHLFCIPACSPDLNPIENFFHLAGKAL
REEALEKQITSETIEEFSARVKEIRLNYPKDKIILSMDKRIEAVIKNRGQ
RTKY
Run BLAST on NCBI

transcript from alignment at sc0000725:117434..118092

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029126 ID=TCONS_00029126|Name=TCONS_00029126|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at sc0000725:117434..118092 (Clytia hemisphaerica)
GCGGCCTCAAACCAAACATTTAGGCGTCATTTGAGGCAGATGGGTTATGG
ATATCGCAGAAGGATCTTGCTACTCGGCTGAAATTTGCAAAACGGTTAAG
GAAGTTTGGACTAGGTTTGGAATTTTGGAAGAAAGGAACAAGCTTCTATT
TGGATGCAGTTGGTTTTATCTATAAGACAAATCCCTTGGACCAGGCCAGG
GCCCCAACAATATGAAAACCGATTATGCGGGAGGGGTTTCGCAACAATGG
TGCGGAAACAGTTTCCACTTGCCTTCACATTATCAATTAACCCCAAGTCG
AAAAGAGTGTTGCAAGATGGCTGTCCAGTGCAAAATTCTAAAAGAGGTAA
GCGTGCTTTGGAACGACTTGGTGCCCATCTATTCTGCATCCCAGCCTGTT
CGCCAGATTTGAACCCCatcgaaaacttttttcatcttGCTGGAAAAGCC
CTCCGTGAAGAAGCATTGGAAAAACAAATCACCAGTGAAACCATAGAAGA
ATTTTCCGCACGTGTTAAGGAAATACGATTGAACTACCCAAAggataaaa
ttattttatcgATGGATAAGCGCATAGAGGCTGTTATTAAAAATCGTGGA
CAACGTACCAAGTATTGAGAGCAGTCTTGTATGGCTTCTAAAGATTGAGT
TGGTTATGG

Coding sequence (CDS) from alignment at sc0000725:117434..118092

>TCONS_00029126 ID=TCONS_00029126|Name=TCONS_00029126|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000725:117434..118092 (Clytia hemisphaerica)
ATGCAGTTGGTTTTATCTATAAGACAAATCCCTTGGACCAGGCCAGGGCC
CCAACAATATGAAAACCGATTATGCGGGAGGGGTTTCGCAACAATGGTGC
GGAAACAGTTTCCACTTGCCTTCACATTATCAATTAACCCCAAGTCGAAA
AGAGTGTTGCAAGATGGCTGTCCAGTGCAAAATTCTAAAAGAGGTAAGCG
TGCTTTGGAACGACTTGGTGCCCATCTATTCTGCATCCCAGCCTGTTCGC
CAGATTTGAACCCCatcgaaaacttttttcatcttGCTGGAAAAGCCCTC
CGTGAAGAAGCATTGGAAAAACAAATCACCAGTGAAACCATAGAAGAATT
TTCCGCACGTGTTAAGGAAATACGATTGAACTACCCAAAggataaaatta
ttttatcgATGGATAAGCGCATAGAGGCTGTTATTAAAAATCGTGGACAA
CGTACCAAGTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016567XLOC_016567Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029126-proteinTCONS_00029126-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029126-exon-sc0000725-1491911889:117434..118092TCONS_00029126-exon-sc0000725-1491911889:117434..118092Clytia hemisphaericaexon
TCONS_00029126-exon-sc0000725-1510915933:117434..118092TCONS_00029126-exon-sc0000725-1510915933:117434..118092Clytia hemisphaericaexon
TCONS_00029126-exon-sc0000725-1575043694:117434..118092TCONS_00029126-exon-sc0000725-1575043694:117434..118092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000725supercontigsc0000725:117434..118092 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.269376	0	0.403631	0.0873329	0.941407	0.891758	0.506803	0.403505	0.158587	0.164585	0.0798749	0.261678	0.209735	0	0.476909	0.72225	0.295922	0.0795713	0.140352	0.434091	0.114844	0.111542	0	0.134669	0.338586	0	0.184569	0	0.0875056	0.0891544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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