TCONS_00029134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029134
Unique NameTCONS_00029134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029134 ID=TCONS_00029134|Name=TCONS_00029134|organism=Clytia hemisphaerica|type=transcript|length=201bp
aatagGCTCTCAAGTTCAACCACCTTCTTCCGAAAATGGATTGCCGAATA
GCTCTCAAGTTCAATCACCTTCTTCCGAAAATGGATTGCCGAATGATTAT
TTGGGATTGAAGATGCCACCTCGAAGGAACCCTGCTGGTCGACCAAAGTT
GCGCCCTGTAGGTTTACCTTACAACAAAAGAAAGCATGTTTCCGATAAGA
A
Run BLAST on NCBI

transcript from alignment at sc0000726:6148..6576+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029134 ID=TCONS_00029134|Name=TCONS_00029134|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at sc0000726:6148..6576+ (Clytia hemisphaerica)
aatagGCTCTCAAGTTCAACCACCTTCTTCCGAAAATGGATTGCCGAATA
GTAAGGAAATAGtttttgtattgtatttttaaatCGAATAGTTCAAGTCC
TCAGAATGACTTCTTTGCTCGGAACGAGCTGCACACTGTTGTTTGAAAAT
ACATGTATTGTATTACTGTGTTTTTTTTCCCAATAGGCTCTCAAGTTCAA
TCACCTTCTTCCGAAAATGGATTGCCGAATGGTAAGGAAATGGATTTGCT
GCAATAGatacatttttcaaatcaaatgtttCAAGTCCTCCCAATATATT
GATTTTTTGTTATGTATTTCAAGATTATTTGGGATTGAAGATGCCACCTC
GAAGGAACCCTGCTGGTCGACCAAAGTTGCGCCCTGTAGGTTTACCTTAC
AACAAAAGAAAGCATGTTTCCGATAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016573XLOC_016573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029134-exon-sc0000726-1491911889:6148..6197TCONS_00029134-exon-sc0000726-1491911889:6148..6197Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1510915933:6148..6197TCONS_00029134-exon-sc0000726-1510915933:6148..6197Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1575043694:6148..6197TCONS_00029134-exon-sc0000726-1575043694:6148..6197Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1491911889:6334..6378TCONS_00029134-exon-sc0000726-1491911889:6334..6378Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1510915933:6334..6378TCONS_00029134-exon-sc0000726-1510915933:6334..6378Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1575043694:6334..6378TCONS_00029134-exon-sc0000726-1575043694:6334..6378Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1491911889:6471..6576TCONS_00029134-exon-sc0000726-1491911889:6471..6576Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1510915933:6471..6576TCONS_00029134-exon-sc0000726-1510915933:6471..6576Clytia hemisphaericaexon
TCONS_00029134-exon-sc0000726-1575043694:6471..6576TCONS_00029134-exon-sc0000726-1575043694:6471..6576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:6148..6576 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	5.53664	5.14352	0	7.65759	4.36968	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top