TCONS_00029138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029138
Unique NameTCONS_00029138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029138 ID=TCONS_00029138|Name=TCONS_00029138|organism=Clytia hemisphaerica|type=transcript|length=713bp
TCTGTTCGTCAGTGTGGAAGAAAAATGTTGCACCCTACCAATGATGACAA
TACGTTTTGGCAAACTAATACCGAAACAGGACAACGTTATCCCTTCTGCA
ATGGCAGCCGAACTCACTTTCCAAGGACCTACAACGAAATGCCTGCCCTT
GTTGCAGTTTCATTAGATGATGATATCAATGAAACTGGCATTAATATGAT
ACCAGTTGGGAGTATCCCAGACAATTTTCAACATGAAAGTAATGGTAACA
ATTTCAATTTTGCTCTGATCGGAATGACCTACGTTAAACTTGCAAAGAAA
GAAGACAACAAAAAGCAACACGTAGACGGCTTCAGAAGAAACCGAGGCCT
TCACTACGTGTGCAAAATCAAGCACAAAGATTCATGGTATCTGTATGACG
GGTTAAAACCGCACGTGGAGCCCACCCATAAAGAAGCTTCATACGCAAAC
TTTCAAATGACCTACCTCCTTTATGtgATACATTCGTCAACAGGATCTAC
CAGTGCACATTCATCAACAGGATCAACCAGTGTAACGACCCAACCCCCTG
ATTTGCTGATTTCAGCGAACAATGTGCGGTCTGAAAGTTCAAGCAACCTA
AAACACTTAGCAGGCAACGCGAAGAACCCAATACTtgtCGAAGACGCAGT
ATCAACAGCAAATATTCGAAATATCAACGTACAACAAATGATCAAAGATT
TTGGAGTTTGCAC
Run BLAST on NCBI

transcript from alignment at sc0000726:8029..13505+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029138 ID=TCONS_00029138|Name=TCONS_00029138|organism=Clytia hemisphaerica|type=transcript|length=5477bp|location=Sequence derived from alignment at sc0000726:8029..13505+ (Clytia hemisphaerica)
TCTGTTCGTCAGTGTGGAAGAAAAATGTTGCACCCTACCAATGATGACAA
TACGTTTTGGCAAACTAATACCGAAACAGGGTAAGCTAATGAAATACAGT
ACACTTCTGGTTATTGAAAACTCGAAGCTCCAAGGGAGATGGGAATATTT
ACTTCAAATAACTAAAAATCTCTTTCCTGTTAGATTTTTCACTGGAAAac
tatataccttatcggctctTTTTACGCCGGTCAATATTGGCGTACTTTTT
CGTCACTGACTTAATaaaggccggtgtaaaaagggccgataaggcaGCAG
ATTTAAATCTATCAAGTAATGATATTAGTATCGAAGAAATAATGTCTTGC
AAGGATTTCTTAATTAGACATGGTTTTACTTTAGACAACGTTATCCCTTC
TGCAATGGCAGCCGAACTCACTTTCCAAGGACCTACAACGAAATGCCTGC
CCTTGTTGCAGTTTCATTAGATGATGATATCAATGAAACTGGCATTAATA
TGATACCAGTTGGGAGTATCCCAGACAATTTTCAACATGAAAGTAATGGT
AACAATTTCAAGTAAGTTTTAAATGTTTGACATTTTAACAAATATTAGAT
TTTGCAAGCACGGAAATTTGTggaattgatttttaaaattgtatagattt
aacttttaaaaatatcacGTGGACAAAGTGAAATCAAATGTCCATATATA
GTATTTAATTTGCGGGCGACAagtttgaaaatgtaaatttttggtGAAAA
CTAGAGGGGAATGAAGGNATGAAATACAGTACACTTCTGGTTATTGAAAA
CTCGAAGCTCCAAGGGAGATGGGAATATTTACTTCAAATAACTAAAAATC
TCTTTCCTGTTAGATTTTTCACTGGAAAactatataccttatcggctctT
TTTACGCCGATCAATATTGGCGTACTTTTTCGTCACTGACTTAACaaagg
ccggtgtaaaaagggccgataaggtagcaGATTTAAATTTATCAAGTAAT
GATACTAGTATCGAAGAAATAATGTCTTGCAAGGATTTCTTAATTAGACA
TGGTTTTACTTTAGACAACGTTATCCCTTCTGCAATGGCAGCCGAACTCA
CTTTCCAAGGACCTACAACGAAATGCCTGCCCTTGTTGCAGTTTCATTAG
ATGATGATATCAATGAAACTGGCATTAATATGATACCAGTTGGGAGTATC
CCAGACAATTTTCAACATGAAAGTAATGGTAACAATTTCAAGTAAGTTTT
AAATGTTTGACATTTTAACAAATATTAGATTTTGCAAGCACGGAAATTTG
TGGAATTGATTTTTAAAATTGTATAGATTTAACTTTTAAAAATATCACGT
GGACAAAGTGAAATCAAATGTCCATATATAGTATTTAATTTGCGGGCGAC
AAGTTTGAAAATGTAAATTTGTGAATGAGTGAAACGGTTTCCCAAAAAGG
CAACAACTCACAAAAGAGAAAATTCAATTCCGAAGCTGTGGGAAATCTGA
TCATATTATTCAATACTTTTTAATCTAGTTTTGCTCTGATCGGAATGACC
TACGTTAAACTTGCAAAgaaaaaagacaacaaaaagCAACACGTAGACGA
CTTCAGAAGAAACCANGGGAAATCTGATCATATTATTCAATACTTTTTAA
TCTAGTTTTGCTCTGATCGGAATGACCTACGTTAAACTTGCAAAGAAAGA
AGACAACAAAAAGCAACACGTAGACGGCTTCAGAAGAAACCGAGGCCTTC
ACTACGTGTGCAAAATCAAGCACAAAGATTCATGGTATCTGTATGACGGG
TTAAAACCGCACGTGGAGCCCACCCATAAAGAAGCTTCATACGCAAACTT
TCAAATGACCTACCTCCTTTATGGTATTTTTAAAATTAGAGGCTGATCTG
AAttagcaattttttatttgattttaaccAAATCTGCTTTTAGGGCGGTA
AAATCTATCTTGGTAAACTTTCGTGGTTTGTAGGTTTATCGGTGTATTTG
TACCGTTTTTGGGTTCTAGCTTAAAGGAGACACCTCTTTTGAGTAAACCG
TGAGCGTGGTCACTCAAAAGAGAATCTCACCCCAGTTTCATAGAAAGATT
CAAACATAAGCACTTTGGTATTCGGTATTCTTTAGCCTTTGATTTATACA
ATTTctctatttattttcttttagtgATACATTCGTCAACAGGATCTACC
AGTGCACATTCATCAACAGGATCAACCAGTGTAACGAGTAAATACATACC
CTCTGATAACTTTGCTACTTGCATCATATGAGATTTTTCGGTCCTGAACC
TGTGGCCTTGAATCCCGTGATCCCTGTTGCCCTGCTTTTTGACCCCGCCC
taataaaaaatggaaaacaaaTTCTTTTTACTTAGGACGTTGCATTTTAA
TCCGGAAAATATTTGAAGGTGCGGGCTGATGGCATTTTAATGTTGCTTTA
AGTTGCTTTTACTTTATTTTCTGAGAGGGTTTAGGTTTATAATTGAAATG
ATGAGCTTTTCACGACAGATTTctcatgttttttgaaaattcagtgtaat
caaattttgtttaaCGTCCAATTCATTTATTTCATTCTAAAAGTTCTAAA
AGCTATATTTTGGGCGCACTTGTGATGGGTTACCAAGTGCTTTTCATAAC
GTGACTTTTGACCTAACATACTTGACTATTACAGCTTCCACTGACAATGA
CTGGACCATGACGTTGACTTTGACAATGATTTTTTCAGACGATAACTTCA
TTTTCAGAGTTTGATAAAAACTCGTGTATGTTCATTTCAATCTttcgttg
ttgtttttttatacaTCTAAGTCTTAGAATTTGAGTTGTCTGGTAACTTG
CTAAACGAAACTTTGAGACTTTGGTGAGTAGTGAGATGAATTCAGGAAAA
TCAAATCACGCAATTAATGGACCTATTCTAAAACAACATAACATAAATTT
TGCAAGACTGACGAAACAGGCTATTAATTAATTTACTCTCCATTTGATAC
ATACAAATTTTAAAAAACCTTAACCTTTTTTTTCTGATGAACGTCTAAGA
TCTCAAATAAAAGTTGATCTGAACCTCCTTTGTATTGATAAACCCCTTTC
TTTTATTCAGCCCAACCCCCTGATTTGCTGATTTCAGCGAACAATGTGCG
GGTAAGTAGTTTATAcataatttcctttttttatttttctcgatGTTGTC
CAACTCAGGCCCTTTAAGTTGTTCTGAaacgaaaattttattttccctct
tttttaaGATCTCTCTGGTACAGTCTAAAAAAACACCGACAGAGTTATAT
GTTCAATGAAAAGGCCTCACGCATCAATCAACACTTTTAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TGAAAGTACCTCTGTAGTGGAGGGTTTCATTGTGCAATATAGTTAAAATA
CGGCTTGAACTTTGAACATTCTGAAATACTGAAGTTTTGGTAATTCTTTC
GTGCATAGAGAAAAGACTACAAATATATCTTTCACTATTGAGTTAGTTTT
GAATAGCCACCTGCTTGAACTACTCGCGTACAAAAGTTGAGATGAAAAGC
TCAACGCTGTATCCCGCGGAGGTGCCATTTTATGTATTTCTTAGCGATTT
TCTCCACATTAATGAAATTCTATGTAAATATTTCACCGACTTGATGGGTA
TCATTGTAACCATATTAAAATTCTATCTTTTTCCGTTATGAAGccgaaaa
aatttctaaaaaataattttttttgaaaaagtaatgatgtttcaaaaatg
gttagtagaatcgactttttttccgaaaagaaaTCCACTTAAAGGGCCTG
AGAATGTTGTTACTTTTTATCGTTTCCTATGTTTAATGATTGATTCCCTC
CCTATATAGTATATAGTGTAATAGAAGGTAAGATTAACTATTCAATATTA
GAGAATAACTGTATAACCTATTTTCAAATCCACAGTCTGAAAGTTCAAGC
AACCTAAAACACTTAGCAGGCAACGCGAAGAACCCAATACTtgtgtaaga
tttttttttgtgtattGATTTTTCCTTTTAGATGCTATCACATCCGATTA
TTGAATTCAATATCTTGTGCAGCTCgcgcaaattttgaataacatcggtt
agattttgaaaaaagactgcttccaaaaactaataaattgcAAATATATT
TTGTGATACTTCGGTTTATTGTgataaatcaaatttctttcgTTTTCTTC
TAAGCGAAGACGCAGTATCAACAGCAAATATTCGAAATATCAACGTACAA
CAAATGATCAAAGGTAATTTACTATTGCTGTTATTGCTCTTATTTTTATC
ACAAAGGGTATAAGAGTACCTTCTTCNAAATATCAACGTACAACAAATGA
TCAAAGgtaatttcttatttttattataaaggGTATAAGAGTACCTTCTT
CTAACATTGTCGTGATATATTTGTCCTACCTTCTTCTTTTTATTATAAAG
GGTATAAGGGTACCTTACCTAGGAGTAATAACTGCAATGTTTTTCTCTAT
AATCTATAATGATATTTCACTTTCATCATATTTCAATTATGCAACAGTCT
CTTTTCTAGAaatgaatgaaacaaaaatttatgaaaaataacaaggaata
aaagaaattaaagtTACAAGTAAAATCTAAAccttaaattgaaaataaat
atttattcTAGATTTTGGAGTTTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016574XLOC_016574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029138-exon-sc0000726-1491911889:8029..8108TCONS_00029138-exon-sc0000726-1491911889:8029..8108Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:8029..8108TCONS_00029138-exon-sc0000726-1510915933:8029..8108Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:8029..8108TCONS_00029138-exon-sc0000726-1575043694:8029..8108Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1491911889:9093..9269TCONS_00029138-exon-sc0000726-1491911889:9093..9269Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:9093..9269TCONS_00029138-exon-sc0000726-1510915933:9093..9269Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:9093..9269TCONS_00029138-exon-sc0000726-1575043694:9093..9269Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1491911889:9684..9901TCONS_00029138-exon-sc0000726-1491911889:9684..9901Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:9684..9901TCONS_00029138-exon-sc0000726-1510915933:9684..9901Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:9684..9901TCONS_00029138-exon-sc0000726-1575043694:9684..9901Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1491911889:10203..10265TCONS_00029138-exon-sc0000726-1491911889:10203..10265Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:10203..10265TCONS_00029138-exon-sc0000726-1510915933:10203..10265Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:10203..10265TCONS_00029138-exon-sc0000726-1575043694:10203..10265Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1491911889:11139..11179TCONS_00029138-exon-sc0000726-1491911889:11139..11179Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:11139..11179TCONS_00029138-exon-sc0000726-1510915933:11139..11179Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:11139..11179TCONS_00029138-exon-sc0000726-1575043694:11139..11179Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1491911889:12764..12822TCONS_00029138-exon-sc0000726-1491911889:12764..12822Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:12764..12822TCONS_00029138-exon-sc0000726-1510915933:12764..12822Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:12764..12822TCONS_00029138-exon-sc0000726-1575043694:12764..12822Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1491911889:13033..13091TCONS_00029138-exon-sc0000726-1491911889:13033..13091Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:13033..13091TCONS_00029138-exon-sc0000726-1510915933:13033..13091Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:13033..13091TCONS_00029138-exon-sc0000726-1575043694:13033..13091Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1491911889:13490..13505TCONS_00029138-exon-sc0000726-1491911889:13490..13505Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1510915933:13490..13505TCONS_00029138-exon-sc0000726-1510915933:13490..13505Clytia hemisphaericaexon
TCONS_00029138-exon-sc0000726-1575043694:13490..13505TCONS_00029138-exon-sc0000726-1575043694:13490..13505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:8029..13505 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.27891	0.661947	2.43063	5.79947	0.0142637	1.39	1.77274	1.16558	1.45674	0	0	0	0	0	0	0.0783028	0.266868	0	0	0	1.69131	5.17585	0	0	0.569722	0.304456
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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