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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029140 ID=TCONS_00029140|Name=TCONS_00029140|organism=Clytia hemisphaerica|type=transcript|length=2249bp
tgttGTTTGTTAAAGTTTATCTTCTTTTCaaacaaatcacatatcaaaac
aaatgtcattGTTGATCCAAAGCTTTCACATCAAAACGatcaaaaatgta
taaaattCCCAATTACCAAGaagtttttcgcggttttaacaaaaatgttt
tctctCAGAATCGAAATCATTTCACATTGTAAGTACCCTTAACAATCCAA
AAGCTCAACATTCGATAGACGAACCATGCTGGTCGGTAAGAAAAGACTCT
GCCAAAATTTATTCGCAGATGAGCACCAGTTTGGTATTTTTTCCAAGTGA
CTTTACCTGAGCACTATCTGAATTATTACCATTTTGACGCATTTGATTGC
TAAGCGAGCTTTTATATTTAACGGTACAATATCCATCATAGTTCATCAAT
GACATTCCgtatgacacccctgtctcacagccccggtggaactttttcct
cagtggggataaaaattcctattgaaatctcaattgggataagaatttta
ttgttccaaggttaaagaATCCAGTTGGGATGgctttggagtgcaatttt
taaacattgaatctcgaatggagatgaaatcaaagtcaaattaCCAGCGG
TGCTGAAATTTCAGAGTATTTTCTcactggggacgaaatttttgccaaat
tttccagcggGGCTGGTgttccagcgggtctgtgacacaggggtgacGTA
TGCTATCAAACATGAAGATGTTTACAACGTAAAGGCAAGCAGGTTATTGC
AAATTGACGCTTTAAAGTAGTTTTGTCCAATATATGCTATTCTGTGAGGA
TTTGTGGGTCAAGATCCGAGAATTACATTACATTTAACTTTAACGGTAGA
AAATTTGTCGGGGGAAATCTacttagcaaaaaaaatattcgtCGACAAAA
AAATTCGTAGCCTATACCAGCTTTTTCAACGTAATTTACGTCCATACCAC
TTTGCAagtttttcgaatgtttggagcccaggttttcggactccaaacat
tcgatttttttacttcacttttaactttcgaagctcctgcagtagcgaaa
aaaatcgaatttacgTCAagacacttgaaaggcttctatttttcaaaaat
cgtcaaagtggagcTCACaaagaaacggaatgaaaaaaTCCCGGTTTTGG
TGAGGTGAATGATTTGTCACTTACCAATAATCTctttttaccgacgaaga
gtTTTTGTAGACGGTAACATAAACACTCATCACATGTTCGACAAAACATC
GAAATCTGAAGGTTGTTTTTTACCATAGCCGTCAGGAATGTTTTCATCTT
TGGTTCGGATTACTGATGAATTGATCAGCGGTACGTTAAATGCCGGTTGG
TGTTGGTTGTTTGCTCCTAAACTTTGTGATAAAATAGTAGCAGCAATGTG
TTCACTTGAAAAGTTATTACTAGATGGTTTCAGTAAAGCGCTACGGTGTA
CTAACTCAGTTTGCTGTTTCTCCCATGTCTCAcgataatattttttctca
tGTTCGTCCTCGCGTTCTTTTACTTCGGCCGCGCGGTCTCGTTGTCGACG
GTTTTTAAACCAATTTGAGACTTGCGTTGTTGATAGACCAGTTCCTTCTG
AAAGCTCTTTCTTTTCACGTGGAGACGGATACGGATTACGGGCATACCAA
TCACGTAAGACGACTCTTGATTTCTCCTTGAAGCAGTATGACGTTTCTTC
ACCGTCCCAAATGGTACGCGGTAACGGATATTTACGACGGACGCGGTATT
TCCCAACAGCACCGAGTGGACGTCCCCGAATTTTCTCGGCTTCCGTGTAA
TGAGCTTTCAACCATAACATTTGTAGTTTAGGATGATAGATGGGTGAAAA
TGTGTTATTCTCTATAATATGATATAATTCTTGTAAGTTTTCTTGGTGAT
ATGCGACCACGCTTTTTGCAACCAGAACGGCTTCATTTGCATAAATATCA
TCATAGGTTGGTAGTGACCAAAGAAAACGGGCCAAGCGATCGAAATTTCC
ACTTTGTTCAAGAACTTCACAAACACATGCCACTTGCTCCGGAGTAAAAC
TTGCAACTGATGGTTGGTGATTGGTTGCAGCGGCGCCATTATTGTTATTG
AAATCCAAGTAAGATGGTATCATATGTTGCGATTGATCCATCTTtaataa
agaaacaaaaacagtatttttttttaactggAATCTACACCCCAGGCGTA
CAGCACTGTCATTAAATCTGAAATGAAATTTAAGAAATCTTATCTCTTA Run BLAST on NCBI transcript from alignment at sc0000726:96335..99042+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029140 ID=TCONS_00029140|Name=TCONS_00029140|organism=Clytia hemisphaerica|type=transcript|length=2708bp|location=Sequence derived from alignment at sc0000726:96335..99042+ (Clytia hemisphaerica)
tgttGTTTGTTAAAGTTTATCTTCTTTTCATATTTACAAACAAATCACAT
ATAAACTCCCGGGAGaaggggcactcaaggtaaacgacttACCGTATGTG
CGGTCCTGAAGCGTCCCTTTTCCAAGCTTCGTAAAGTCCACTCTTAGGAT
CGAcatgagcaaagatgagaaaaattgcactctaagagtgtaaagttttg
aaaatctgaccatattttgcctaaaaatggtcaaagatCTTCAAagaagt
gcactgtaagggtccgatttcaaaggcctaattttgggccgcactcatgg
tcatttttgaatcgagtgcccccggGTCCAAACTTCGTCTTTTGAGACAC
TCTAGATGAATCACCATCTGGTTTTTCTAGTTCACAAATCAACTTTTTCA
CTtaagaaatctaaaaaataacaaattctcaagtatcaaaaatatataaa
atgttGTTTGTtaaagtttatctttttttcatatttacaaacaaatcaca
tatcaaaacaaatgtcattGTTGATCCAAAGCTTTCACATCAAAACGatc
aaaaatgtataaaattCCCAATTACCAAGaagtttttcgcggttttaaca
aaaatgttttctctCAGAATCGAAATCATTTCACATTGTAAGTACCCTTA
ACAATCCAAAAGCTCAACATTCGATAGACGAACCATGCTGGTCGGTAAGA
AAAGACTCTGCCAAAATTTATTCGCAGATGAGCACCAGTTTGGTATTTTT
TCCAAGTGACTTTACCTGAGCACTATCTGAATTATTACCATTTTGACGCA
TTTGATTGCTAAGCGAGCTTTTATATTTAACGGTACAATATCCATCATAG
TTCATCAATGACATTCCgtatgacacccctgtctcacagccccggtggaa
ctttttcctcagtggggataaaaattcctattgaaatctcaattgggata
agaattttattgttccaaggttaaagaATCCAGTTGGGATGgctttggag
tgcaatttttaaacattgaatctcgaatggagatgaaatcaaagtcaaat
taCCAGCGGTGCTGAAATTTCAGAGTATTTTCTcactggggacgaaattt
ttgccaaattttccagcggGGCTGGTgttccagcgggtctgtgacacagg
ggtgacGTATGCTATCAAACATGAAGATGTTTACAACGTAAAGGCAAGCA
GGTTATTGCAAATTGACGCTTTAAAGTAGTTTTGTCCAATATATGCTATT
CTGTGAGGATTTGTGGGTCAAGATCCGAGAATTACATTACATTTAACTTT
AACGGTAGAAAATTTGTCGGGGGAAATCTacttagcaaaaaaaatattcg
tCGACAAAAAAATTCGTAGCCTATACCAGCTTTTTCAACGTAATTTACGT
CCATACCACTTTGCAagtttttcgaatgtttggagcccaggttttcggac
tccaaacattcgatttttttacttcacttttaactttcgaagctcctgca
gtagcgaaaaaaatcgaatttacgTCAagacacttgaaaggcttctattt
ttcaaaaatcgtcaaagtggagcTCACaaagaaacggaatgaaaaaaTCC
CGGTTTTGGTGAGGTGAATGATTTGTCACTTACCAATAATCTctttttac
cgacgaagagtTTTTGTAGACGGTAACATAAACACTCATCACATGTTCGA
CAAAACATCGAAATCTGAAGGTTGTTTTTTACCATAGCCGTCAGGAATGT
TTTCATCTTTGGTTCGGATTACTGATGAATTGATCAGCGGTACGTTAAAT
GCCGGTTGGTGTTGGTTGTTTGCTCCTAAACTTTGTGATAAAATAGTAGC
AGCAATGTGTTCACTTGAAAAGTTATTACTAGATGGTTTCAGTAAAGCGC
TACGGTGTACTAACTCAGTTTGCTGTTTCTCCCATGTCTCAcgataatat
tttttctcatGTTCGTCCTCGCGTTCTTTTACTTCGGCCGCGCGGTCTCG
TTGTCGACGGTTTTTAAACCAATTTGAGACTTGCGTTGTTGATAGACCAG
TTCCTTCTGAAAGCTCTTTCTTTTCACGTGGAGACGGATACGGATTACGG
GCATACCAATCACGTAAGACGACTCTTGATTTCTCCTTGAAGCAGTATGA
CGTTTCTTCACCGTCCCAAATGGTACGCGGTAACGGATATTTACGACGGA
CGCGGTATTTCCCAACAGCACCGAGTGGACGTCCCCGAATTTTCTCGGCT
TCCGTGTAATGAGCTTTCAACCATAACATTTGTAGTTTAGGATGATAGAT
GGGTGAAAATGTGTTATTCTCTATAATATGATATAATTCTTGTAAGTTTT
CTTGGTGATATGCGACCACGCTTTTTGCAACCAGAACGGCTTCATTTGCA
TAAATATCATCATAGGTTGGTAGTGACCAAAGAAAACGGGCCAAGCGATC
GAAATTTCCACTTTGTTCAAGAACTTCACAAACACATGCCACTTGCTCCG
GAGTAAAACTTGCAACTGATGGTTGGTGATTGGTTGCAGCGGCGCCATTA
TTGTTATTGAAATCCAAGTAAGATGGTATCATATGTTGCGATTGATCCAT
CTTtaataaagaaacaaaaacagtatttttttttaactggAATCTACACC
CCAGGCGTACAGCACTGTCATTAAATCTGAAATGAAATTTAAGAAATCTT
ATCTCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029140-exon-sc0000726-1491911889:96335..96363 | TCONS_00029140-exon-sc0000726-1491911889:96335..96363 | Clytia hemisphaerica | exon |
| TCONS_00029140-exon-sc0000726-1510915933:96335..96363 | TCONS_00029140-exon-sc0000726-1510915933:96335..96363 | Clytia hemisphaerica | exon |
| TCONS_00029140-exon-sc0000726-1575043694:96335..96363 | TCONS_00029140-exon-sc0000726-1575043694:96335..96363 | Clytia hemisphaerica | exon |
| TCONS_00029140-exon-sc0000726-1491911889:96823..99042 | TCONS_00029140-exon-sc0000726-1491911889:96823..99042 | Clytia hemisphaerica | exon |
| TCONS_00029140-exon-sc0000726-1510915933:96823..99042 | TCONS_00029140-exon-sc0000726-1510915933:96823..99042 | Clytia hemisphaerica | exon |
| TCONS_00029140-exon-sc0000726-1575043694:96823..99042 | TCONS_00029140-exon-sc0000726-1575043694:96823..99042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:96335..99042 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00029140 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 2.587e-99 Identity = 141/182 (77.47%), Postives = 160/182 (87.91%), Query Frame = -1
Query: 1506 SFTPEQVACVCEVLEQSGNFDRLARFLWSLPTYDDIYANEAVLVAKSVVAYHQENLQELYHIIENNTFSPIYHPKLQMLWLKAHYTEAEKIRGRPLGAVGKYRVRRKYPLPRTIWDGEETSYCFKEKSRVVLRDWYARNPYPSPREKKELSEGTGLSTTQVSNWFKNRRQRDRAAEVKERED 2051
FT EQVACVCEVL+Q GN +RL RFLWSLP D ++ NE+VL AK+VVA+H+ N +ELY I+E++ FSP HPKLQ LWLKAHY EAEK+RGRPLGAVGKYRVRRK+PLPRTIWDGEETSYCFKEKSR VLR+WYA NPYPSPREK+EL+E TGL+TTQVSNWFKNRRQRDRAAE KERE+
Sbjct: 8 GFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
The following BLAST results are available for this feature:
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