|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029142 ID=TCONS_00029142|Name=TCONS_00029142|organism=Clytia hemisphaerica|type=transcript|length=1582bp
AATCTGCCATCTTTGCTAAATTAGATCACAGTGTAGACAGCAGCTCGGTG
CCGGCAATTCGACNATTCTTTGACGTTAAAACTCGTGTTAAAGGAATCAC
AGAGCAGATTAGATCGCGAGAAGTGTCTGAAGATGATCGCGGCTCAGAAT
CCGACCGCTTCTCAAGCCCTAAAGCTTACTACAAAAAGGATGCGTACGGT
GAGCGTTGCCTGGCAACCAGTGAAGGCTATTCAACCGGTAACGGAAATTC
AACAGACGAAAATGATTTTAGTGATCGACCTTTTGAATCGTCCAGCAACG
AATCGTTTAGTTCGCCAAACAAAAGTTTAGACTCTTCGAAATCTCCATTA
TTAAATGACGTTACGGTCAATGAAACAGATGGGATTTCATTGGACGGCCT
TACGAACGTTAAAAACGATACTAGTGATTCGGCTTTAAGTCCAGGCCAAA
TAACACCGACAAATCCCGAAGGACAGCAGGGAGCGCAAAACCAAACCATA
GACGTTATATTAACGCATAAAACGCGAGAAGAGGAACCAGTGTTTAGTCA
CCTCAATAAAGAAGAGTTTGCCAAAGATATTGTGTTTGAGGGAACGTCCG
TTAGCACCAcgcgaaagaaaaagaaaaggaagaaacCAAAGAAAGcaaac
gATGCCGAAATAACAGACCGTCTCTCTGCACCAGCTGCGACCTCCAATAT
TCTCTCCTCTACTGAAAGCCTCACCATGGAAACCAATACTCTGCCACCGC
AACAAATTGGTGTTGATACAACTGAACAGAACGTTGAACTCACTCAAAAT
GGTGTTGTTGTAAACGGTGTCATCTCTAACGAAGACTCTCAACAAAATGG
ACTTAATATTCAACAAAACGATAACGTTGTGtctaaacattttgaaaata
atactcAACAAAACACTAACAATATTGAACTTGATTCGAGCGATATTAGA
CAAAGTGAAGAATCCGCGCAACAACAAATACGTGTTGTAGATAAAGCTTC
GTGcgatgaaaatgttgaaattgaTTTAACATTGTCcagcacaaattttg
aaaataatgtccATACTGAAGGAAACGTAGACTTTGTTGATGGAGTCGAT
AAATTGGATTTACACCAAGTTGACGAAATTCAGAATGGAGATAATAATTG
TGATGAGAATGGTGAAAATTATGTAAACGAGGACCAATCATTTCAACCTG
TTATTGATAGAGTTAAACTTGAAGGTCTGGTGGATAATGAGAGAGTTAAA
ACCCTGGACACACACGAAAGTAATGTTGAAAACAATGGTTTTATTGAGAA
AAAGCAACAACAAAACGATGATAAGGGTCTATTTAAATCTACTGACGATG
AAAAGTTAATTCTTGAACTGAACAATGTCGATTCTGGTGTAAACACATCT
GTAGAAGATTCGCCACATGTAAATAGTGCCTTAGGTGATAATGATATTAC
GATGAAAAGTGATTGTGAAAATGATGTTGATAATGAACTTTCGATACATA
CTGCTCCTACAAGTAGTGTCCAAGAGCATGGTTTATTAACGGTGGCCTCT
AATGATCAAAACATGGACTCTGGTGTGAAACA Run BLAST on NCBI transcript from alignment at sc0000726:162672..165269+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029142 ID=TCONS_00029142|Name=TCONS_00029142|organism=Clytia hemisphaerica|type=transcript|length=2598bp|location=Sequence derived from alignment at sc0000726:162672..165269+ (Clytia hemisphaerica)
AATCTGCCATCTTTGCTAAATTAGATCACAGTGTAGACAGCAGCTCGGTG
CCGGCAATTCGACNATTCTTTGACGTTAAAACTCGTGTTAAAGGAATCAC
AGAGCAGATTAGATCGCGAGAAGTGTCTGAAGATGATCGCGGCTCAGAAT
CCGACCGCTTCTCAAGCCCTAAAGCTTACTACAAAAAGGATGCGTACGGT
GAGCGTTGCCTGGCAACCAGTGAAGGCTATTCAACCGGTAACGGAAATTC
AACAGACGAAAATGATTTTAGTGATCGACCTTTTGAATCGTCCAGCAACG
AATCGTTTAGTTCGCCAAACAAAAGTTTAGACTCTTCGAAATCTCCATTA
TTAAATGACGTTACGGTCAATGAAACAGATGGGATTTCATTGGACGGCCT
TACGAACGTTAAAAACGATACTAGTGATTCGGCTTTAAGTCCAGGCCAAA
TAACACCGACAAATCCCGAAGGACAGCAGGGAGCGCAAAACCAAACCATA
GACGTTATATTAACGCATAAAACGCGAGAAGAGGAACCAGTGTTTAGTCA
CCTCAATAAAGAAGAGTTTGCCAAAGATATTGTGTTTGAGGGAACGTCCG
TTAGCACCAcgcgaaagaaaaagaaaaggaagaaacCAAAGAAAGGTATT
TCTTTATAATACAGTATTGAAAGCTCTTGCGTTTCAGACGGTATTCCGTC
TTAGCGAAGTTTATAAAGAGGCTTTTCCGTCTCggaatatattgagattt
tagtatattttaacgtttttcagaatttaaagttcgggcgacaATTGCTA
TTTTATCACTTCCatttccactttcttccattgaatatttcaattttaga
ggggtttggtggcttctaggctatattccaagcctcattcgagcaaattt
gagcttttaaatcctgagatcctaaggtcctaaNNNNNNNNNNNNNNNNN
NNgagcttttaaatcctgagatcctaaggttctaagtcttaagtctcatg
ttaaaactcagagttaaaactctactttccaactgtagtttaggGCGCTT
aaaaatcccctttgtctcaaatatttagtggatgattgtagctgaagcaa
aataatccgccatcttgGCTATAGTAGATCACAGTGAAGACAGCAGCTCG
GTGACGGCAATTTGACCTATAAAGCaggttttttgtttatttcagcaAAT
TGCCTGGTACCAGTACTACCTATGGTCTACTTCAGCAAAtatggcgcatt
attttgcttccaCTGCCGTTTCTTTGGAATTACAGAGTAGGCCTATCtag
tgttttgtataagatatctgtggttttgGATCCCCTTTTACTTTTAAGTT
TTCTCTTTTACTTCTTTCTCTTTTCCGAacgggaaaaatcaaatttatag
CAAAGTAAAATACGGAAGACTTCTTCGTGAGGCTGTCATTTTATAGAGTT
TTTTGTAGAGGACGAGATATTATGTTTAGTAATTAAAAACTCTAGCATCA
CAACAGTAACTCTCAAAAGCATGACTAGTAAACGTGTGTACTAAATATTT
TCTTATCGTCGCTTTGATGTTGGAGTCATGACTTTTTAACACCAAGGGCA
TTTGAAGTTCGGACTCTTTGCACGGTCAAATTCAAATAACATACTTCTaa
ttttattttagcaaacgATGCCGAAATAACAGACCGTCTCTCTGCACCAG
CTGCGACCTCCAATATTCTCTCCTCTACTGAAAGCCTCACCATGGAAACC
AATACTCTGCCACCGCAACAAATTGGTGTTGATACAACTGAACAGAACGT
TGAACTCACTCAAAATGGTGTTGTTGTAAACGGTGTCATCTCTAACGAAG
ACTCTCAACAAAATGGACTTAATATTCAACAAAACGATAACGTTGTGtct
aaacattttgaaaataatactcAACAAAACACTAACAATATTGAACTTGA
TTCGAGCGATATTAGACAAAGTGAAGAATCCGCGCAACAACAAATACGTG
TTGTAGATAAAGCTTCGTGcgatgaaaatgttgaaattgaTTTAACATTG
TCcagcacaaattttgaaaataatgtccATACTGAAGGAAACGTAGACTT
TGTTGATGGAGTCGATAAATTGGATTTACACCAAGTTGACGAAATTCAGA
ATGGAGATAATAATTGTGATGAGAATGGTGAAAATTATGTAAACGAGGAC
CAATCATTTCAACCTGTTATTGATAGAGTTAAACTTGAAGGTCTGGTGGA
TAATGAGAGAGTTAAAACCCTGGACACACACGAAAGTAATGTTGAAAACA
ATGGTTTTATTGAGAAAAAGCAACAACAAAACGATGATAAGGGTCTATTT
AAATCTACTGACGATGAAAAGTTAATTCTTGAACTGAACAATGTCGATTC
TGGTGTAAACACATCTGTAGAAGATTCGCCACATGTAAATAGTGCCTTAG
GTGATAATGATATTACGATGAAAAGTGATTGTGAAAATGATGTTGATAAT
GAACTTTCGATACATACTGCTCCTACAAGTAGTGTCCAAGAGCATGGTTT
ATTAACGGTGGCCTCTAATGATCAAAACATGGACTCTGGTGTGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029142-exon-sc0000726-1491911889:162672..163316 | TCONS_00029142-exon-sc0000726-1491911889:162672..163316 | Clytia hemisphaerica | exon |
| TCONS_00029142-exon-sc0000726-1510915933:162672..163316 | TCONS_00029142-exon-sc0000726-1510915933:162672..163316 | Clytia hemisphaerica | exon |
| TCONS_00029142-exon-sc0000726-1575043694:162672..163316 | TCONS_00029142-exon-sc0000726-1575043694:162672..163316 | Clytia hemisphaerica | exon |
| TCONS_00029142-exon-sc0000726-1491911889:164333..165269 | TCONS_00029142-exon-sc0000726-1491911889:164333..165269 | Clytia hemisphaerica | exon |
| TCONS_00029142-exon-sc0000726-1510915933:164333..165269 | TCONS_00029142-exon-sc0000726-1510915933:164333..165269 | Clytia hemisphaerica | exon |
| TCONS_00029142-exon-sc0000726-1575043694:164333..165269 | TCONS_00029142-exon-sc0000726-1575043694:164333..165269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:162672..165269 + |
Blast
The following BLAST results are available for this feature:
|
