TCONS_00029152 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00029152
Unique Name	TCONS_00029152
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1626

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000726:121239..125421-

transcript sequence

>TCONS_00029152 ID=TCONS_00029152|Name=TCONS_00029152|organism=Clytia hemisphaerica|type=transcript|length=1626bp
AAGGAATTGGACTGAAAAGTTTGGTTCCTGAAACAGTTCAACTTTCTGAA
TCTTATATAGTTTTAGATGAAATAACAATAATGTAAGACAAAAGGAGGAA
AAAAATATGAGTTATCTACTGTCATTCAGTCCAATtgacttttcaaagaa
ttttgccTTTGGTCTTGGTATTGGGGTTGGACTTGGTGTAGTGTTTCGTA
GATTCTCACAAGAAAAGCAGCGGAAAAGAGAACATCTCATTTCATGTCTC
AAACAACTTGCAGCAGAAGTACGCCAACTGCGTGAAACATTTGTACAATA
TGCCACCACTAGACCTTCCTTAGATGCCATTGAAGATGTATCCAGCGATG
ATGAATTTTATGACACTGATCGTGGAAATGAATCTAATGATGATTTTGAA
GGCTTTTTGAGACAAATTGACCAATTACAAAGTGGGTCGTCAGCAGATCA
TCAAGATGCATACAATTTGTTAATTAATAAAACAAACCAAatCCATGATA
ATGCTGAGTTGCTATGGAGGTTTGCAAAATCTCAATATCAAATCTCATGC
TTGAAAGAGAAAGCAGGTGATTCAGAAGCACAGAAACTGATGTTACTCAA
AggcATAGATACGGCCAAAGAAGCTATTGAAATTGATGAAACAAATTACA
GAGCACATCAGTGgtaCGCTATTTTAATCGGGACAAATACAAAGAATTTA
GACAATAAAGAAAAGATTTTATCAGGTTATGAATATAAGCAACACATAGA
ACGAGCTATCGAATTGAATGACAATGATGCAACATCATACTTTTTGTATG
GAAGATATTTATTTGaggtTTCCATGCTACCGTGGTACATGAGGAAAGTG
GCATCAGCATTATTTGCAGAGCCACCAACAGCTAAAATTGAAGACGCATT
AGCTATGTTTAAAAAAGCAGAAGAAATACGACCAGGATTTTATGTTGAAA
ATCCTCTGTTTATAGGAAAATGTTATTATCAAATGTCAAAATATAAAGAG
GCAAAAGAGTGGCTGTCAAAGGCTGTAAATGCTGATTGTAAAACTGACGA
GgaTAAAAAGACGAAACAAGAAgcattgaatttaatgaaaaaatgcTGAC
AAAGTATTTTTTTAGACTTAACATAGAAATCTTCAAATAGGATTTATTGA
CAATTATAGCCTTTCATACTCAATCAATATTCATTCTCTATAAAATAATG
CATTTCGAAGCTttttaaaaaacgaaaatcacCGCTTCTGCTGAATTAAT
AAATCATATACTTTCAGAAATTCAGAATTCGCTACTACTACCATGCatgt
tttttagttttagggtctttaaattagaaaattttgttttttctaattgC
TTTTCGTAAACTTTTTTGTTCTTATGTAAATACTTGTAGATCCATTTAAA
AGACAATATTATTTTAAATTCATCAAGAAAATGTTCGAATTCTTGTATTG
GCATCCAATTTTTtatgatataatttttttcaatgatatTTCGTGTAAAT
AGTTTTTCAAAGAAGCGTTTCTACGTATCGCATGTCGAGGTGTTTTTGTc
atgttattatttttattgactTCCAATTAATCCATACAAATTGACCTTCA
TTGAATTTACAATCTTTGAAATTTAA

Run BLAST on NCBI

transcript from alignment at sc0000726:121239..125421-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00029152 ID=TCONS_00029152|Name=TCONS_00029152|organism=Clytia hemisphaerica|type=transcript|length=4183bp|location=Sequence derived from alignment at sc0000726:121239..125421- (Clytia hemisphaerica)
AAGGAATTGGACTGAAAAGTTTGGTTCCTGAAACAGTTCAACTTTCTGAA
TCTTATATAGTTTTAGATGAAATAACAATAATGTAAGACAAAAGGAGGAA
AAAAATATGAGTTATCTACTGTCATTCAGTCCAATTGACTTTTCAAAGAA
TTTTGCCTTTGGTCTTGGTATTGGGGTTGGACTTGGTGTAGTGTTTCGTA
GATTCTCACAAGAAAAGCAGCGGAAAAGAGAACATCTCATTTCATGTCTC
AAACAACTTGCAGCAGAAGTACGCCAACTGCGTGAAACATTTGTACAATA
TGCCACCACTAGACCTTCCTTAGATGCCATTGAAGATGTATCCAGCGATG
ATGAATTTTATGACACTGATCGTGGAAATGAATCGTAAGTTTAACAACTT
TTTCTTTCTCATCCTTTCGTTTCGACTAATTGAGGTATTGTTCCTACATA
AAACCAATAATACTAAGTATGTCTTCACACATTATATAGAGTTATATTAT
TTTGGTATTTTTATCTGTTTTTACTAATTTACTTTTTTATATTTGTGATT
TTTGTACTTTTTTTTAGTAATGATGATTTTGAAGGCTTTTTGAGACAAAT
TGACCAATTACAAAGTGGGTCGTCAGCAGATCATCAAGATGCATACAATT
TGTTAATTAATAAAACAAACCAAGTAAAAATTAACTTAAATTTTTGTTAC
AGTAGACCCTTATTATTTGTTTCGAAATTATTTGAAAATGAAGTGACTAC
TTTCTCCTTAAAATACCAGCTTGGACCGTAGCATGTCATTGGTAATGTAG
ATTGTGGGGAAATTGTTCTGAGCCTTTTTTCTAAGGCCTTGATTCAGTTG
ACCAGATTGTTAGAATTTTGGTTTTACTTTATTGTTTGAAATGTAAACCT
CATTCTCCTTATTCTCTTTGGTAATCTATGTTAAAGAATGATTAAATTTT
TTGTTTAGATCCATGATAATGCTGAGTTGCTATGGAGGTTTGCAAAATCT
CAATATCAAATCTCATGCTTGAAAGAGAAAGCAGGTGATTCAGAAGCACA
GAAACTGATGTTACTCAAAGGTATGAAAATATTTGATGAAAAAGATTATT
GAGCTCTTTGTTTTTCCAAAATGAATTCTATTTCTATGTGTTTTAACAGT
TTGGAATGCAATAGATTATGACCAGTACACCTTTAAAATATATTATTTCA
GTTATACAAAATTTCTTTGATTTACTCTTCCTTAATTATTTTTTTTAGGC
ATAGATACGGCCAAAGAAGCTATTGAAATTGATGAAACAAATTACAGAGC
ACATCAGTGGTAAATAGATTTTCAATAATTTTCGAATCTATACCTTGCAT
CATTTGCAACCTGAATAGTTTGGTCAATTGTTTAAAGATAATACACATTT
TTTTAACAAACAAGTGTCTGTCCCTATATGAGGCTTGCATTATGCTTAGT
ATTCCATTGTTCTTAAACAATAGAGCCATTGTTTAGGCACCAAAAACTGA
GCCTGTGTATGCTTATAAACGTTATGCTTATAAAAGAAAAAACATGTATC
TGGAAAAAGTTTGCCAAAATGGATATAATTTGATGATGAAATGAACGGAA
AAAGCTTTGCAATAAGTAAAATAAGTAAGTTTGCGGTCACATTCATTAAG
CAGAGATGCATCAAGTACCATCTTTGTACAAAATACAGGGTCTTTGCTAT
GATCTGACGAGGAATTGAACCCACGTTCAATTATAGCCCGATGTTCTACC
TTTGCACTAGGGTTGCTTTGAAATAAGATCTTTTCATGATTCTTCTTTAA
ACTCTAGTTTATTTATTGTTAATGTTACAAACTTTGATAAAATTTTTTTT
TTCCAGGTACGCTATTTTAATCGGGACAAATACAAAGAATTTAGACAATA
AAGAAAAGATTTTATCAGGTTATGAATATAAGGTAAAAGATTTATTAAAT
CCTTTTTTTGGTTTTTGTCCCCTGTTGGTGTATTTTCGCAGTTATCCTGC
CTGTTAAAAAACTAGGGTCACCAAATTTTTTTTCCGACAAATAGATTTTT
TTTCTCCAGAATTAGTTCCCTTCTTGTAGATTTACTGACAATATAGTTCA
GCTGAAAGGGTTAAACTTTCTACATTTTAAAGACTTTTAAAATTACCTTT
TAATTCAATTTAGCAACACATAGAACGAGCTATCGAATTGAATGACAATG
ATGCAACATCATACTTTTTGTATGGAAGATATTTATTTGAGGTAATTCAA
TTTTCAAATTTTGTTTGTTACACGTTTTTTATAAGAGCATCTTAAGCCTT
CGGATGCTCTTAGCTTTTTGAGTTTTAAGCCTAAAATGCTCTTAGAATGT
TCTTAATTTCTTTAATCGGTGTTTTAAAGAGTCCATAAAACCTTAAAATG
TTCTTAACTTGTTCTTAATATTTTAGTCATCAAAGCCTTTTGTTCTTATA
TAGTCTATTCTACAAAAAAATGTGTACTTTAGCAATTTCAACATTTAAAC
TATCATCTATATCAACAGCAATTTTTAAAATTTGGTGCCTTTTGCTAAAT
CTTGGTTAAAATCATTTTTATGATAATAAGACTTAATTCAGTCCTTAAAA
ACCAAATTATACTTTTTTTGTCTATTTCTCACAAAAAGCAGAAACGTCTA
TTAATTTTCTGTATTTATTTTTGTGGGTTCTTGTGAACCTTTACCAGATA
TTCTTTCTAGACTCATGACAGCCCCTATAGCCCCTGGGTAACTGTAGGGC
TTGGTCGATGAAGAAGCTCAATCCAGCTAACAGCAAAACTGTATTTCATT
TTTTCAGGTTTCCATGCTACCGTGGTACATGAGGAAAGTGGCATCAGCAT
TATTTGCAGAGCCACCAACAGCTAAAATTGAAGACGCATTAGCTATGTTT
AAAAAAGTAACCACTACCTTCTTATCATTTTGCTTTCACCCAGAATTCAA
AGCTATTTTGTACCATATTTTAATTGGATTGTAAATATTGTTTTTATGAG
TAATGTTATGGAAATCATTGCTTTGATTGTATGTACTTAGTCTTATGTAT
GCCTTTACACATCTCTCTTTTTTAGGCAGAAGAAATACGACCAGGATTTT
ATGTTGAAAATCCTCTGTTTATAGGAAAAGTAAGTTTCGCGTATTCTTTT
TCTTCTTGAAGTATAAACAAAAGAAATGACAGATGGATTGATTGTATAAC
AAGACCTCTGAAGCTGAAATCGCTAAAAATTTGCCACCTAAAATTTTAAC
TTTTTCAATGTAGAATGAGAATTCTTTTGCCAAAGAAAAAATAGTTAAAA
TGTGTGTTTTTTAACTTCTTCTCCCATAGTGTTATTATCAAATGTCAAAA
TATAAAGAGGCAAAAGAGTGGCTGTCAAAGGCTGTAAATGCTGATTGTAA
AACTGACGAGGTTAGTTACTTTGACTAAATTACTTACTATTCAAGTTTAC
TAAATTATTGTGATTTTTCAGTTTTTGATTCTTCTCTTCTAAAAATTGCA
ACTTTTTATTCCGATTAGTAGATGTCAATTTCCTTCAATGTCAATTTATA
ATACATTGTTCTTTTAATGATAATGTTTTTAATTTGTAACAATCTTCTTC
TTTTTCAGGATAAAAAGACGAAACAAGAAGCATTGAATTTAATGAAAAAA
TGCTGACAAAGTATTTTTTTAGACTTAACATAGAAATCTTCAAATAGGAT
TTATTGACAATTATAGCCTTTCATACTCAATCAATATTCATTCTCTATAA
AATAATGCATTTCGAAGCTTTTTAAAAAACGAAAATCACCGCTTCTGCTG
AATTAATAAATCATATACTTTCAGAAATTCAGAATTCGCTACTACTACCA
TGCATGTTTTTTAGTTTTAGGGTCTTTAAATTAGAAAATTTTGTTTTTTC
TAATTGCTTTTCGTAAACTTTTTTGTTCTTATGTAAATACTTGTAGATCC
ATTTAAAAGACAATATTATTTTAAATTCATCAAGAAAATGTTCGAATTCT
TGTATTGGCATCCAATTTTTTATGATATAATTTTTTTCAATGATATTTCG
TGTAAATAGTTTTTCAAAGAAGCGTTTCTACGTATCGCATGTCGAGGTGT
TTTTGTCATGTTATTATTTTTATTGACTTCCAATTAATCCATACAAATTG
ACCTTCATTGAATTTACAATCTTTGAAATTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016583	XLOC_016583	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000726	supercontig	sc0000726:121239..125421 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.9917	37.922	27.7129	21.9422	79.5047	56.6359	61.3817	57.6485	48.535	42.1216	31.8855	33.5944	29.3059	27.2935	27.1622	28.8746	35.2236	36.7094	20.2683	27.5353	22.3234	21.2208	36.0614	37.507	25.7024	30.0495	22.5751	14.9791	22.7481	24.1119

Blast

[Close]

BLAST of TCONS_00029152 vs. Swiss-Prot (Human)
Match: RMD1 (Regulator of microtubule dynamics protein 1 OS=Homo sapiens GN=RMDN1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.471e-40
Identity = 85/230 (36.96%), Postives = 131/230 (56.96%), Query Frame = 2

Query:  398 EGFLRQIDQLQSGSSADHQDAYNLLINKTNQIHDNAELLWRFAKSQYQISCLKEKAGDSEAQKLMLLKGIDTAKEAIEIDETNYRAHQWYAILIGTNTKNLDNKEKILSGYEYKQHIERAIELNDNDATSYFLYGRYLFEVSMLPWYMRKVASALFAEPPTAKIEDALAMFKKAEEIRPGFYVENPLFIGKCYYQMSKYKEAKEWLSKAVNADCKTDEDKKTKQEALNLM 1087
            E  L Q D L    S + +  Y LL        ++AELLWR A++   ++ L   +   E +KL++ + ++ AK A+E +E+++ +H+WYAI +         K KI + Y  K+H E+AIELN  DATS  L G + +  + +PWY R++A  LFA PP++  E AL  F +AE++ P FY +N L +GK Y ++   K A  WL KA +    T+EDK+ + EA  L+
Sbjct:   84 EEILEQADYLYE--SGETEKLYQLLTQYKES--EDAELLWRLARASRDVAQLSRTS--EEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQIQTEAAQLL 307

The following BLAST results are available for this feature:

BLAST of TCONS_00029152 vs. Swiss-Prot (Human)

BLAST of TCONS_00029152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RMD1	3.471e-40	36.96	Regulator of microtubule dynamics protein 1 OS=Hom...	[more]

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TCONS_00029152 (transcript) - C. hemisphaerica