TCONS_00029153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029153
Unique NameTCONS_00029153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029153 ID=TCONS_00029153|Name=TCONS_00029153|organism=Clytia hemisphaerica|type=transcript|length=1731bp
agataggaaagggaaaatgggCCGGCGCGCTCTGAGCATTTAGCGAAATG
TCTGCGGAAAAGATTCTACTGTCGACTTTTACTGTTTTTACTGCCTGACT
TTGCTTTTAGTTTTACCGTTTTCACAGTCCAATTCAACTGGCGCATCTGC
TTTCTGCAACCATCGTTTTAGATGAAATAACAATAATGTAAGACAAAAGG
AGGAAAAAAATATGAGTTATCTACTGTCATTCAGTCCAATtgacttttca
aagaattttgccTTTGGTCTTGGTATTGGGGTTGGACTTGGTGTAGTGTT
TCGTAGATTCTCACAAGAAAAGCAGCGGAAAAGAGAACATCTCATTTCAT
GTCTCAAACAACTTGCAGCAGAAGTACGCCAACTGCGTGAAACATTTGTA
CAATATGCCACCACTAGACCTTCCTTAGATGCCATTGAAGATGTATCCAG
CGATGATGAATTTTATGACACTGATCGTGGAAATGAATCTAATGATGATT
TTGAAGGCTTTTTGAGACAAATTGACCAATTACAAAGTGGGTCGTCAGCA
GATCATCAAGATGCATACAATTTGTTAATTAATAAAACAAACCAAatCCA
TGATAATGCTGAGTTGCTATGGAGGTTTGCAAAATCTCAATATCAAATCT
CATGCTTGAAAGAGAAAGCAGGTGATTCAGAAGCACAGAAACTGATGTTA
CTCAAAggcATAGATACGGCCAAAGAAGCTATTGAAATTGATGAAACAAA
TTACAGAGCACATCAGTGGTAAGCTATTTTAATCGGGACAAATACAAAGA
ATTTAGACAATAAAGAAAAGATTTTATCAGGTTATGAATATAAGCAACAC
ATAGAACGAGCTATCGAATTGAATGACAATGATGCAACATCATACTTTTT
GTATGGAAGATATTTATTTGaggtTTCCATGCTACCGTGGTACATGAGGA
AAGTGGCATCAGCATTATTTGCAGAGCCACCAACAGCTAAAATTGAAGAC
GCATTAGCTATGTTTAAAAAAGCAGAAGAAATACGACCAGGATTTTATGT
TGAAAATCCTCTGTTTATAGGAAAATGTTATTATCAAATGTCAAAATATA
AAGAGGCAAAAGAGTGGCTGTCAAAGGCTGTAAATGCTGATTGTAAAACT
GACGAGgaTAAAAAGACGAAACAAGAAgcattgaatttaatgaaaaaatg
cTGACAAAGTATTTTTTTAGACTTAACATAGAAATCTTCAAATAGGATTT
ATTGACAATTATAGCCTTTCATACTCAATCAATATTCATTCTCTATAAAA
TAATGCATTTCGAAGCTttttaaaaaacgaaaatcacCGCTTCTGCTGAA
TTAATAAATCATATACTTTCAGAAATTCAGAATTCGCTACTACTACCATG
Catgttttttagttttagggtctttaaattagaaaattttgttttttcta
attgCTTTTCGTAAACTTTTTTGTTCTTATGTAAATACTTGTAGATCCAT
TTAAAAGACAATATTATTTTAAATTCATCAAGAAAATGTTCGAATTCTTG
TATTGGCATCCAATTTTTtatgatataatttttttcaatgatatTTCGTG
TAAATAGTTTTTCAAAGAAGCGTTTCTACGTATCGCATGTCGAGGTGTTT
TTGTcatgttattatttttattgactTCCAATTAATCCATACAAATTGAC
CTTCATTGAATTTACAATCTTTGAAATTTAA
Run BLAST on NCBI

protein sequence of TCONS_00029153-protein

>TCONS_00029153-protein ID=TCONS_00029153-protein|Name=TCONS_00029153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MSYLLSFSPIDFSKNFAFGLGIGVGLGVVFRRFSQEKQRKREHLISCLKQ
LAAEVRQLRETFVQYATTRPSLDAIEDVSSDDEFYDTDRGNESNDDFEGF
LRQIDQLQSGSSADHQDAYNLLINKTNQIHDNAELLWRFAKSQYQISCLK
EKAGDSEAQKLMLLKGIDTAKEAIEIDETNYRAHQW
Run BLAST on NCBI

transcript from alignment at sc0000726:121239..132371-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029153 ID=TCONS_00029153|Name=TCONS_00029153|organism=Clytia hemisphaerica|type=transcript|length=11133bp|location=Sequence derived from alignment at sc0000726:121239..132371- (Clytia hemisphaerica)
AGATAGGAAAGGGAAAATGGGCCGGCGCGCTCTGAGCATTTAGCGAAATG
TCTGCGGAAAAGATTCTACTGTCGACTTTTACTGTTTTTACTGCCTGACT
TTGCTTTTAGTTTTACCGTTTTCACAGTCCAATTCAACTGGCGCATCTGC
TTTCTGCAACCATCGGTAAAAGCTATTCACCTTTGTTTTATCTAATCACT
TAAACATCACACCAGGCCAAGCTATCTTTTCAGAAATTTTACGGATTGCA
CACTCTTCTTGAAGGATCTGACTCCTATAGTATAGAATCACTGAGCTTTT
CATCCGGATGTGAAACCAGGGAGCTTCAGATGCTTTTTTGAAGAAGCAAG
TTGTCAAATGTTTTTCCAGGTTTCCTGATTGTTTTTAGGAAGTACCATAA
GTTTGGTCTAATATATTGACATCCCTCATCCCTTCTTTAGAGACAGGGAA
TAATATGAAAGCTTGTCCCAGACGATCTCAATCGAACGGAAACGACGATC
GAACCAGTCGAACCAAATCGAACGCAATCGACCGATTGAAATTCGATTGT
CGAACGCAATCTAATCTCAATCGAACGTCAAAATTCTGGGTAGTATTCGA
TTGGTTCGATTGTTGTTCAACTGGTTCGATCGTCGATTCTGTTCCATTGA
GATCGTCTGGCTTTATTCTTGCAGCTTCCCAACATCCAAGCTCTCAAACA
TCACAAGCCGATTGAAATTACTTTCAATTTTCCGTACAAATTATGCGATG
AACAATCTGGGGGTCAATGAATCGACGATAGAACACAATCGAATATCAAT
CGAATCTGAAAATTGCGGTAATATTCGATCGAGATTCGATTGCGTTCGAC
AATCGAATTTCAATCGGTCGATTGCGTTCGATTTGGTTCGACTGGTTCGA
TCGTCGATTCCGTTCGATTGAGATCGTCTGGGCTTGGGAATCACTGTTTG
AAAAAGAATTATTCCTCTCTGACCACTAAGCAAAGAACAACAGTTTCAAC
CTTTTATCAATTTCAGCTGATAAAAAGGGTGTCGAAAATAGAGGAGGGAT
GTCGACATTAGACCAGACGTTAATAATTGATAAAATCAATTATCGATTAA
AAATTGATAGCTAATCGATAATTAATCGATTGATTAAATATCGGTTAAAA
ACGATAATCGATAGCTATTTGATAGGCACAATTTTTTAGCACTCAATTTA
ATTATAATAATTTTTTTTTGATAACTTTTGAAATATGATTCCACCTGATG
ACGTCCTCATTCTCAAATTTTTTTTCGATGATATAGATTACAGTGTTAAT
AATTGATAATATCGATGTAATCCATACCTTAACCTTATCGATTTTTAATC
GATAATATCGATAAAACTTGTTTTTAATATTGATAGTATATATCGAGTAA
AATCGATATCTATAAATTATCGATTTCTAATCGATACTATCGAACTATCT
GCATGTTAGCCTCTACTGATGCAAGTTACCTAATCTCACGGTAACTAATT
GATTGAGTAATCGATAGCTAATCGACAATCAGGAACAATGTCTTAGTTAG
GACAATGGCCTAACTAGGACAATGGCCTAAGAAGGACATTTTTTATGTCC
TAATTAGGCCATAAGTAGGACATTTTTAATTTGAACCCCCATTTTAGACA
TTTTAGAGGAAAATGCGCATGCTAAAAACATAACCAATCGAAAGAGCAAC
CTTTAATTGATATTATGTAGAAAATTTCTTCAGAATATGCGGAATGGTTT
TTGCGAAGCGAATTTATGAGCGAAGCAGTTTTGCTATATTGTGCACATAC
CTTTAACTTCTATCCCAAGCGAAAATTTGCTATAAAATTTGCTATATAAA
TAACATCTTCAAACCGATGATTTTATCAAAATAACCTTGAATGGTTTGGC
TTGAGGTCAGAAAACTGCGAAAAATGCCGAAAAATGCCGTTTTAAAATGG
TGTACCCTAGCAGTGAACAGCAACAAAATTACCGGAAGCCGAAACACGGA
CTTAGAATCTGAAGTTGATCAAATTGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTAATGTTTATTTTGCTGTTAAATGGAAAAAAAATAGTTTGAACGGTG
ACAGAAAGGATCTTCATCATCCCTTGACTTTTAACAGCAAGTATCAAGTA
TCAAATCAAATAAGATCAATCAATGAGTGGTTTTTGCAAGTCGCGCGGGC
GGGAGGAGTGCTCTTTTAGTGAATGAAACTTGCAAAACCAAGTGGATATT
CTATGATAAAGAAGTACGGAGGTAATCAAATTTGTCGAATTTGTCAAGAA
ATAAATCAAAACTGCCGAAGAACCAACAAGCCATCTTTGTACATTTTTGT
TTTTGTTTTATTTTTATGTTTTGTGATGATTTCGACAGACGATTTGTGAT
ACGAATAAAAATGTTTGATCGTTCGACGAATATCGTTCAATTTTATTAAA
GCACCATTTACACTAGAATAACTAGAAGGAAAACAAAAGAGCGATGCGCG
GGCAGCGGCGGGTGTTGTGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATTATGTGGTGTGTTTGGG
GCATTAAGGCTCTTACGACCCTGTCTCTATAGCGGCTTTATTAGAAGAGG
GATTTTTAGAGAGTCTCTTATTTTGCTAGCAACTTACGAATTGAGGTGGA
GTCTGGATCGCTTTGCAACCCTTATACAATACAGCTAGTTTCTCTATGTG
TCTTTGAATAAGGCCAATAAGTTTCTCCACTTAAAGCTTTAGACATTGCC
GTGAATAATTCACTGCCGCTTGGTCTACCATCATGAAAATTCCCGATTTT
ACAAATAAAGGACTGTCTACATCATAAAATTTCGGCTTTTGTAACATGTA
GACTAGGCTTTAGGGCTAGGATAAGATATTTCTTGATTACTTTGAACAAA
ATATATGAAAATCACCTAGAACCTTTATTTTTGGTGCTCTTTCGATTGGC
GATGGTGAGAAAGTGCGCATTTTTCTTGATTTTGAGTTATAGGCTAAAAT
AGAAAAAATGGCCTAGTAGGGACATTTTTTATTTCCTAGTTAGTAAATAT
ATGTCCAAACTAACTCATGATGTCCTAAGTAAGACATTGTTCCTGACTGA
TCGATAAGTAATCAATTTAAATCGATATCACATCTAATTGATATAATCGA
TATCTTATATCTGATTGATATAATCGATACTCACAATTTTTTAGGCGCTG
ATTACTTATCGACTATCGTCAATCGATTAAATATCGATTAGCTATCAATT
TTAATCGATAATCGATTTTATCGATTAGTAACGTCTGGATTAGACCAAGT
TACAGTATGGGAAAACCGTTGAGGAATTTTAAAAATTTATTTTCAAATTG
TAAACTTGTTTGTTTTGTTTTTGTTTTTTTTCTTTTTTTTGTTTAATTAT
TATTATCATGTCTGAGGAATTAGCATCAGAGTTATTCTGCTTTCCTTTTC
CCAGTACAGTCTTCTCGTTGCGGCACGCCAGACAACACCGGGTTCTCGTC
AAATTCCTGATTCTGTGTTTGACAGTTTTTAGTGTTGTTTCCAATTTTTA
TGTGATTTTTTCTATTTTTGTGTGAGATGTTGTTTGCTACAAATGTTTGT
TTCACCTGTGTATGTGGGATAGTTGTTACAGTGTGTCTTTTTTATCTTTT
GTACTGTATTTTGTTTCAGTGTTTGTTTGTTGTTCGTTATTTGTTTGGCA
TGGTTTCAGCCCCCCTTAAAATAAGGGGGGACTTAAATTTTTGAAAAAAG
CTTTAAGGGGTCAAATTTTTGGAAAATCTGAAGTAAGGGGGGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTTCACACGGTTTGCAATTCGAGTGTTTTTTAAATTAGATGA
CAAATGACTTCTTTTTTATTCTTTTATGTAATCTGTTTTTTTTAGTATGA
TAACAAACTTTTTTAAAAAAACTAATAATTTAAGGGGGGACATTAAAATA
TTGGAGTGAAAATTAAGGGGGGAGTACCTTTTAAGGGGCAGCTTTAATAA
ATTTTGGAAGATAAGGGGGGGGGAAATGGATAAGGGGTAAATTTCTGTTT
TAAGGGGGGGACTGAAATCATGGATGAAACCATGTTTGGAATCTGCTGGT
CGGTTCCATTTTTGTTTTATGTTTTCTGAAGGCAACTGAGTGTGGGCCCT
TAAACACGAGGAAAGTCACTATGCTAGTCACAATTCTGGGACTTCGGGTT
GTGTTTTGTGTTTGTATGTTTTTTTTTATGTATTTGATGTAGTTGCTTTT
GTATTTGTCCCAATTTTGTATGTATTTTGATGAACTTTACGTAAATGATT
GTACGGAAATGTGTTTATCAAAATAAATTTTTTGCAATTCATTCTTTCTC
CACTATAGTTTTTCTTCTATCATCTTCATTTGGGTTAGGTTTTTCTTTTA
CATACCACTATTTAAATTCCCTTTCACTTTTTGCTAACTTTCCCTCGGTT
TCCCTCGGGAAACGCATATTTTGGACTTTGTTCCCAATGTTGCATGCGAG
CCTTTAAGCTAAAACCTCGCAAAAGTAGGACAAAAATCAGTTTTTTGAAA
TTTGCAAAAGCACACCATACACTGCACTGTTGAAGATCTTTCAAATTCAG
GCAGTATATGGTGAGATCGGGCAGTCTAGACTTAAAGGGGACGTCAGCTT
TGAGATATCATTTTTACCATTTTTTTAGAGAAGATACCTACAATGAAAAA
AAAGTGATTGCAAAAAGAACGAATAAAAAATATTTTTTTCTTGGCTGAGT
TATTCAAATTTTAATCTTTATTGTTTTGACTCTAGGATGGAGAAAATAAA
CAAAGGAGAGTAAATTAGTGACGTAGATAGTGTGTTTCTGTTTCCCCTCC
TCTTTCTTTTAATAACAAATTTCTCCGAATAACTCGCAAATATCTGCTCT
TTTTCGCCAGCGATTTTTAGAACAGAGATCCCCCATTTTCCAAGGCACTA
ATTCTATACTCAGAACAGATTGTATTTCTGACAAGTATAGATAAACTGGA
TAAAACTAATGAACAGATAAAATTTTCTGAAGGAAAAAAAGCAGATCGAC
TTTCCTGTTTAATAATTATGAAATCTCTCTCTTTTTACCAAAAATCTTGT
TTAACAGATAAATTGTTTAAAAAGTAGAGAAGCACGTTTGTTACATCACA
GATTTAAAAAGAAGGGGAATTTTCAAACGTCTATTATTACTCATTGACAA
AAAACTTTCAATAATATATAGCTCGTTTTGATCGTCTTGTTCTAAATTTT
CTAAATGTAACAAAAAATGTGTGACAAAAATTTGGGCTGACGTCCCCTTT
AAACTCCTACATCAAGATTATGGGACTTGGAGTGTGGGCCTGTTTTACTT
TCATTTTCAGTGGTTTCACTTTCAATTTCAAGTCAACATCTTAGCAACGG
ATTGCTATATTATAGGCCGTGGCCAGGCCCCTCAAAAAGTTTCACTTTTT
TTCAAAATACTGGTGAACAAGCTTTGACCATTAATTCTAGTCAATTTGAG
GGTGCTAATTTGGAATTTGAATGTTACCAAGCTTGAAAACTTGCAGTTTT
TGTGTAATTTGCATTTTTTTGCGTTTTTAGGCAAAATTGTAAGCCCTGAA
AATTTGCCCTGCTTGAAACTCCTCAAAGATTGCTCCCTCAAAGCATTTTT
AAGGAATTGGACTGAAAAGTTTGGTTCCTGAAACAGTTCAACTTTCTGAA
TCTTATATAGTTTTAGATGAAATAACAATAATGTAAGACAAAAGGAGGAA
AAAAATATGAGTTATCTACTGTCATTCAGTCCAATTGACTTTTCAAAGAA
TTTTGCCTTTGGTCTTGGTATTGGGGTTGGACTTGGTGTAGTGTTTCGTA
GATTCTCACAAGAAAAGCAGCGGAAAAGAGAACATCTCATTTCATGTCTC
AAACAACTTGCAGCAGAAGTACGCCAACTGCGTGAAACATTTGTACAATA
TGCCACCACTAGACCTTCCTTAGATGCCATTGAAGATGTATCCAGCGATG
ATGAATTTTATGACACTGATCGTGGAAATGAATCGTAAGTTTAACAACTT
TTTCTTTCTCATCCTTTCGTTTCGACTAATTGAGGTATTGTTCCTACATA
AAACCAATAATACTAAGTATGTCTTCACACATTATATAGAGTTATATTAT
TTTGGTATTTTTATCTGTTTTTACTAATTTACTTTTTTATATTTGTGATT
TTTGTACTTTTTTTTAGTAATGATGATTTTGAAGGCTTTTTGAGACAAAT
TGACCAATTACAAAGTGGGTCGTCAGCAGATCATCAAGATGCATACAATT
TGTTAATTAATAAAACAAACCAAGTAAAAATTAACTTAAATTTTTGTTAC
AGTAGACCCTTATTATTTGTTTCGAAATTATTTGAAAATGAAGTGACTAC
TTTCTCCTTAAAATACCAGCTTGGACCGTAGCATGTCATTGGTAATGTAG
ATTGTGGGGAAATTGTTCTGAGCCTTTTTTCTAAGGCCTTGATTCAGTTG
ACCAGATTGTTAGAATTTTGGTTTTACTTTATTGTTTGAAATGTAAACCT
CATTCTCCTTATTCTCTTTGGTAATCTATGTTAAAGAATGATTAAATTTT
TTGTTTAGATCCATGATAATGCTGAGTTGCTATGGAGGTTTGCAAAATCT
CAATATCAAATCTCATGCTTGAAAGAGAAAGCAGGTGATTCAGAAGCACA
GAAACTGATGTTACTCAAAGGTATGAAAATATTTGATGAAAAAGATTATT
GAGCTCTTTGTTTTTCCAAAATGAATTCTATTTCTATGTGTTTTAACAGT
TTGGAATGCAATAGATTATGACCAGTACACCTTTAAAATATATTATTTCA
GTTATACAAAATTTCTTTGATTTACTCTTCCTTAATTATTTTTTTTAGGC
ATAGATACGGCCAAAGAAGCTATTGAAATTGATGAAACAAATTACAGAGC
ACATCAGTGGTAAATAGATTTTCAATAATTTTCGAATCTATACCTTGCAT
CATTTGCAACCTGAATAGTTTGGTCAATTGTTTAAAGATAATACACATTT
TTTTAACAAACAAGTGTCTGTCCCTATATGAGGCTTGCATTATGCTTAGT
ATTCCATTGTTCTTAAACAATAGAGCCATTGTTTAGGCACCAAAAACTGA
GCCTGTGTATGCTTATAAACGTTATGCTTATAAAAGAAAAAACATGTATC
TGGAAAAAGTTTGCCAAAATGGATATAATTTGATGATGAAATGAACGGAA
AAAGCTTTGCAATAAGTAAAATAAGTAAGTTTGCGGTCACATTCATTAAG
CAGAGATGCATCAAGTACCATCTTTGTACAAAATACAGGGTCTTTGCTAT
GATCTGACGAGGAATTGAACCCACGTTCAATTATAGCCCGATGTTCTACC
TTTGCACTAGGGTTGCTTTGAAATAAGATCTTTTCATGATTCTTCTTTAA
ACTCTAGTTTATTTATTGTTAATGTTACAAACTTTGATAAAATTTTTTTT
TTCCAGGTACGCTATTTTAATCGGGACAAATACAAAGAATTTAGACAATA
AAGAAAAGATTTTATCAGGTTATGAATATAAGGTAAAAGATTTATTAAAT
CCTTTTTTTGGTTTTTGTCCCCTGTTGGTGTATTTTCGCAGTTATCCTGC
CTGTTAAAAAACTAGGGTCACCAAATTTTTTTTCCGACAAATAGATTTTT
TTTCTCCAGAATTAGTTCCCTTCTTGTAGATTTACTGACAATATAGTTCA
GCTGAAAGGGTTAAACTTTCTACATTTTAAAGACTTTTAAAATTACCTTT
TAATTCAATTTAGCAACACATAGAACGAGCTATCGAATTGAATGACAATG
ATGCAACATCATACTTTTTGTATGGAAGATATTTATTTGAGGTAATTCAA
TTTTCAAATTTTGTTTGTTACACGTTTTTTATAAGAGCATCTTAAGCCTT
CGGATGCTCTTAGCTTTTTGAGTTTTAAGCCTAAAATGCTCTTAGAATGT
TCTTAATTTCTTTAATCGGTGTTTTAAAGAGTCCATAAAACCTTAAAATG
TTCTTAACTTGTTCTTAATATTTTAGTCATCAAAGCCTTTTGTTCTTATA
TAGTCTATTCTACAAAAAAATGTGTACTTTAGCAATTTCAACATTTAAAC
TATCATCTATATCAACAGCAATTTTTAAAATTTGGTGCCTTTTGCTAAAT
CTTGGTTAAAATCATTTTTATGATAATAAGACTTAATTCAGTCCTTAAAA
ACCAAATTATACTTTTTTTGTCTATTTCTCACAAAAAGCAGAAACGTCTA
TTAATTTTCTGTATTTATTTTTGTGGGTTCTTGTGAACCTTTACCAGATA
TTCTTTCTAGACTCATGACAGCCCCTATAGCCCCTGGGTAACTGTAGGGC
TTGGTCGATGAAGAAGCTCAATCCAGCTAACAGCAAAACTGTATTTCATT
TTTTCAGGTTTCCATGCTACCGTGGTACATGAGGAAAGTGGCATCAGCAT
TATTTGCAGAGCCACCAACAGCTAAAATTGAAGACGCATTAGCTATGTTT
AAAAAAGTAACCACTACCTTCTTATCATTTTGCTTTCACCCAGAATTCAA
AGCTATTTTGTACCATATTTTAATTGGATTGTAAATATTGTTTTTATGAG
TAATGTTATGGAAATCATTGCTTTGATTGTATGTACTTAGTCTTATGTAT
GCCTTTACACATCTCTCTTTTTTAGGCAGAAGAAATACGACCAGGATTTT
ATGTTGAAAATCCTCTGTTTATAGGAAAAGTAAGTTTCGCGTATTCTTTT
TCTTCTTGAAGTATAAACAAAAGAAATGACAGATGGATTGATTGTATAAC
AAGACCTCTGAAGCTGAAATCGCTAAAAATTTGCCACCTAAAATTTTAAC
TTTTTCAATGTAGAATGAGAATTCTTTTGCCAAAGAAAAAATAGTTAAAA
TGTGTGTTTTTTAACTTCTTCTCCCATAGTGTTATTATCAAATGTCAAAA
TATAAAGAGGCAAAAGAGTGGCTGTCAAAGGCTGTAAATGCTGATTGTAA
AACTGACGAGGTTAGTTACTTTGACTAAATTACTTACTATTCAAGTTTAC
TAAATTATTGTGATTTTTCAGTTTTTGATTCTTCTCTTCTAAAAATTGCA
ACTTTTTATTCCGATTAGTAGATGTCAATTTCCTTCAATGTCAATTTATA
ATACATTGTTCTTTTAATGATAATGTTTTTAATTTGTAACAATCTTCTTC
TTTTTCAGGATAAAAAGACGAAACAAGAAGCATTGAATTTAATGAAAAAA
TGCTGACAAAGTATTTTTTTAGACTTAACATAGAAATCTTCAAATAGGAT
TTATTGACAATTATAGCCTTTCATACTCAATCAATATTCATTCTCTATAA
AATAATGCATTTCGAAGCTTTTTAAAAAACGAAAATCACCGCTTCTGCTG
AATTAATAAATCATATACTTTCAGAAATTCAGAATTCGCTACTACTACCA
TGCATGTTTTTTAGTTTTAGGGTCTTTAAATTAGAAAATTTTGTTTTTTC
TAATTGCTTTTCGTAAACTTTTTTGTTCTTATGTAAATACTTGTAGATCC
ATTTAAAAGACAATATTATTTTAAATTCATCAAGAAAATGTTCGAATTCT
TGTATTGGCATCCAATTTTTTATGATATAATTTTTTTCAATGATATTTCG
TGTAAATAGTTTTTCAAAGAAGCGTTTCTACGTATCGCATGTCGAGGTGT
TTTTGTCATGTTATTATTTTTATTGACTTCCAATTAATCCATACAAATTG
ACCTTCATTGAATTTACAATCTTTGAAATTTAA

Coding sequence (CDS) from alignment at sc0000726:121239..132371-

>TCONS_00029153 ID=TCONS_00029153|Name=TCONS_00029153|organism=Clytia hemisphaerica|type=CDS|length=2244bp|location=Sequence derived from alignment at sc0000726:121239..132371- (Clytia hemisphaerica)
GCATAGATACGGCCAAAGAAGCTATTGAAATTGATGAAACAAATTACAGA
GCACATCAGTGGTAAATCCATGATAATGCTGAGTTGCTATGGAGGTTTGC
AAAATCTCAATATCAAATCTCATGCTTGAAAGAGAAAGCAGGTGATTCAG
AAGCACAGAAACTGATGTTACTCAAAGTAATGATGATTTTGAAGGCTTTT
TGAGACAAATTGACCAATTACAAAGTGGGTCGTCAGCAGATCATCAAGAT
GCATACAATTTGTTAATTAATAAAACAAACCAAATGAGTTATCTACTGTC
ATTCAGTCCAATTGACTTTTCAAAGAATTTTGCCTTTGGTCTTGGTATTG
GGGTTGGACTTGGTGTAGTGTTTCGTAGATTCTCACAAGAAAAGCAGCGG
AAAAGAGAACATCTCATTTCATGTCTCAAACAACTTGCAGCAGAAGTACG
CCAACTGCGTGAAACATTTGTACAATATGCCACCACTAGACCTTCCTTAG
ATGCCATTGAAGATGTATCCAGCGATGATGAATTTTATGACACTGATCGT
GGAAATGAATCGCATAGATACGGCCAAAGAAGCTATTGAAATTGATGAAA
CAAATTACAGAGCACATCAGTGGTAAATCCATGATAATGCTGAGTTGCTA
TGGAGGTTTGCAAAATCTCAATATCAAATCTCATGCTTGAAAGAGAAAGC
AGGTGATTCAGAAGCACAGAAACTGATGTTACTCAAAGTAATGATGATTT
TGAAGGCTTTTTGAGACAAATTGACCAATTACAAAGTGGGTCGTCAGCAG
ATCATCAAGATGCATACAATTTGTTAATTAATAAAACAAACCAAATGAGT
TATCTACTGTCATTCAGTCCAATTGACTTTTCAAAGAATTTTGCCTTTGG
TCTTGGTATTGGGGTTGGACTTGGTGTAGTGTTTCGTAGATTCTCACAAG
AAAAGCAGCGGAAAAGAGAACATCTCATTTCATGTCTCAAACAACTTGCA
GCAGAAGTACGCCAACTGCGTGAAACATTTGTACAATATGCCACCACTAG
ACCTTCCTTAGATGCCATTGAAGATGTATCCAGCGATGATGAATTTTATG
ACACTGATCGTGGAAATGAATCGCATAGATACGGCCAAAGAAGCTATTGA
AATTGATGAAACAAATTACAGAGCACATCAGTGGTAAATCCATGATAATG
CTGAGTTGCTATGGAGGTTTGCAAAATCTCAATATCAAATCTCATGCTTG
AAAGAGAAAGCAGGTGATTCAGAAGCACAGAAACTGATGTTACTCAAAGT
AATGATGATTTTGAAGGCTTTTTGAGACAAATTGACCAATTACAAAGTGG
GTCGTCAGCAGATCATCAAGATGCATACAATTTGTTAATTAATAAAACAA
ACCAAATGAGTTATCTACTGTCATTCAGTCCAATTGACTTTTCAAAGAAT
TTTGCCTTTGGTCTTGGTATTGGGGTTGGACTTGGTGTAGTGTTTCGTAG
ATTCTCACAAGAAAAGCAGCGGAAAAGAGAACATCTCATTTCATGTCTCA
AACAACTTGCAGCAGAAGTACGCCAACTGCGTGAAACATTTGTACAATAT
GCCACCACTAGACCTTCCTTAGATGCCATTGAAGATGTATCCAGCGATGA
TGAATTTTATGACACTGATCGTGGAAATGAATCGCATAGATACGGCCAAA
GAAGCTATTGAAATTGATGAAACAAATTACAGAGCACATCAGTGGTAAAT
CCATGATAATGCTGAGTTGCTATGGAGGTTTGCAAAATCTCAATATCAAA
TCTCATGCTTGAAAGAGAAAGCAGGTGATTCAGAAGCACAGAAACTGATG
TTACTCAAAGTAATGATGATTTTGAAGGCTTTTTGAGACAAATTGACCAA
TTACAAAGTGGGTCGTCAGCAGATCATCAAGATGCATACAATTTGTTAAT
TAATAAAACAAACCAAATGAGTTATCTACTGTCATTCAGTCCAATTGACT
TTTCAAAGAATTTTGCCTTTGGTCTTGGTATTGGGGTTGGACTTGGTGTA
GTGTTTCGTAGATTCTCACAAGAAAAGCAGCGGAAAAGAGAACATCTCAT
TTCATGTCTCAAACAACTTGCAGCAGAAGTACGCCAACTGCGTGAAACAT
TTGTACAATATGCCACCACTAGACCTTCCTTAGATGCCATTGAAGATGTA
TCCAGCGATGATGAATTTTATGACACTGATCGTGGAAATGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016583XLOC_016583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029153-exon-sc0000726-1575043694:132207..132371TCONS_00029153-exon-sc0000726-1575043694:132207..132371Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:125038..125361TCONS_00029153-exon-sc0000726-1575043694:125038..125361Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:124749..124854TCONS_00029153-exon-sc0000726-1575043694:124749..124854Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:124352..124463TCONS_00029153-exon-sc0000726-1575043694:124352..124463Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:124109..124173TCONS_00029153-exon-sc0000726-1575043694:124109..124173Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:123490..123561TCONS_00029153-exon-sc0000726-1575043694:123490..123561Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:123181..123258TCONS_00029153-exon-sc0000726-1575043694:123181..123258Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:122516..122614TCONS_00029153-exon-sc0000726-1575043694:122516..122614Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:122293..122346TCONS_00029153-exon-sc0000726-1575043694:122293..122346Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:122012..122092TCONS_00029153-exon-sc0000726-1575043694:122012..122092Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1575043694:121239..121813TCONS_00029153-exon-sc0000726-1575043694:121239..121813Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:132207..132371TCONS_00029153-exon-sc0000726-1510915933:132207..132371Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:125038..125361TCONS_00029153-exon-sc0000726-1510915933:125038..125361Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:124749..124854TCONS_00029153-exon-sc0000726-1510915933:124749..124854Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:124352..124463TCONS_00029153-exon-sc0000726-1510915933:124352..124463Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:124109..124173TCONS_00029153-exon-sc0000726-1510915933:124109..124173Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:123490..123561TCONS_00029153-exon-sc0000726-1510915933:123490..123561Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:123181..123258TCONS_00029153-exon-sc0000726-1510915933:123181..123258Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:122516..122614TCONS_00029153-exon-sc0000726-1510915933:122516..122614Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:122293..122346TCONS_00029153-exon-sc0000726-1510915933:122293..122346Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:122012..122092TCONS_00029153-exon-sc0000726-1510915933:122012..122092Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1510915933:121239..121813TCONS_00029153-exon-sc0000726-1510915933:121239..121813Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:132207..132371TCONS_00029153-exon-sc0000726-1491911889:132207..132371Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:125038..125361TCONS_00029153-exon-sc0000726-1491911889:125038..125361Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:124749..124854TCONS_00029153-exon-sc0000726-1491911889:124749..124854Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:124352..124463TCONS_00029153-exon-sc0000726-1491911889:124352..124463Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:124109..124173TCONS_00029153-exon-sc0000726-1491911889:124109..124173Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:123490..123561TCONS_00029153-exon-sc0000726-1491911889:123490..123561Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:123181..123258TCONS_00029153-exon-sc0000726-1491911889:123181..123258Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:122516..122614TCONS_00029153-exon-sc0000726-1491911889:122516..122614Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:122293..122346TCONS_00029153-exon-sc0000726-1491911889:122293..122346Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:122012..122092TCONS_00029153-exon-sc0000726-1491911889:122012..122092Clytia hemisphaericaexon
TCONS_00029153-exon-sc0000726-1491911889:121239..121813TCONS_00029153-exon-sc0000726-1491911889:121239..121813Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029153-proteinTCONS_00029153-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:121239..132371 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1638	14.4975	6.50367	11.9771	5.38444	4.25469	2.5804	6.90201	2.62402	2.31704	5.17158	2.28676	1.22536	1.1701	2.11047	2.26486	3.04377	1.81986	2.51424	1.0976	6.98269	7.64858	14.7216	7.74867	0.872374	1.95364	6.94958	5.56596	7.12546	9.55225
Blast
[Close]
BLAST of TCONS_00029153 vs. Swiss-Prot (Human)
Match: RMD1 (Regulator of microtubule dynamics protein 1 OS=Homo sapiens GN=RMDN1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.782e-39
Identity = 84/230 (36.52%), Postives = 130/230 (56.52%), Query Frame = 2 
Query:  503 EGFLRQIDQLQSGSSADHQDAYNLLINKTNQIHDNAELLWRFAKSQYQISCLKEKAGDSEAQKLMLLKGIDTAKEAIEIDETNYRAHQW*AILIGTNTKNLDNKEKILSGYEYKQHIERAIELNDNDATSYFLYGRYLFEVSMLPWYMRKVASALFAEPPTAKIEDALAMFKKAEEIRPGFYVENPLFIGKCYYQMSKYKEAKEWLSKAVNADCKTDEDKKTKQEALNLM 1192
            E  L Q D L    S + +  Y LL        ++AELLWR A++   ++ L   +   E +KL++ + ++ AK A+E +E+++ +H+W AI +         K KI + Y  K+H E+AIELN  DATS  L G + +  + +PWY R++A  LFA PP++  E AL  F +AE++ P FY +N L +GK Y ++   K A  WL KA +    T+EDK+ + EA  L+
Sbjct:   84 EEILEQADYLYE--SGETEKLYQLLTQYKES--EDAELLWRLARASRDVAQLSRTS--EEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQIQTEAAQLL 307
The following BLAST results are available for this feature:
BLAST of TCONS_00029153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RMD16.782e-3936.52Regulator of microtubule dynamics protein 1 OS=Hom... [more]
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