TCONS_00029154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029154
Unique NameTCONS_00029154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029154 ID=TCONS_00029154|Name=TCONS_00029154|organism=Clytia hemisphaerica|type=transcript|length=1105bp
CTTTCTTTGgtttcttccttttctttttctttcgcgTGGTGCTAACGGAC
GTTCCCTCAAACACAATATCTTTGGCAAACTCTTCTTTATTGAGGTGACT
AAACACTGGTTCCTCTTCTCGCGTTTTATGCGTTAATATAACGTCTATGG
TTTGGTTTTGCGCTCCCTGCTGTCCTTCGGGATTTGTCGGTGTTATTTGG
CCTGGACTTAAAGCCGAATCACTAGTATCGTTTTTAACGTTCGTAAGGCC
GTCCAATGAAATCCCATCTGTTTCATTGACCGTAACGTCATTTAATAATG
GAGATTTCGAAGAGTCTAAACTTTTGTTTGGCGAACTAAACGATTCGTTG
CTGGACGATTCAAAAGGTCGATCACTAAAATCATTTTCGTCTGTTGAATT
TCCGTTACCGGTTGAATAGCCTTCACTGGTTGCCAGGCAACGCTCACCGT
ACGCATCCTTTTTGTAGTAAGCTTTAGGGCTTGAGAAGCGGTCGGATTCT
GAGCCGCGATCATCTTCAGACACTTCTCGCGATCTAATCTGCTCTGTGAT
TCCTTTAACACGAGTTTTAACGTCAAAGAATNCGCGACCCATTTTATTAC
CGACTTCGTCGAGGATTTTATCAATCTTGTCCTGGTCCTCAAAGGAGTTG
ACGGAACCGTGTCGTTGTGCTTTCATCACATCTGATGGGTTATTCAAATC
AAGTTCTTCAACAACGATGCACGGATTTACTTCAAATAAAATCCTGCGTA
CAAAGTTCTCTTTGCTTTTCGACAAAACAAATATCTCGTTATCCACTACG
CCAACGTCGACGACGCACCCCAAGTTACTATGACAACCGACTACGACGCC
TGTAGTCGGGTCCAGCACCCATACATTCGAACCTTGCCACGTGATTAAAA
ATTGATCGTGAAACGTTTTGATTGGTCCAAATTGACGTTGTTCACCGTGG
GCCGATACCGGTAAATTGGATTGTAAATCAATAGTCTGGATTTCCGGTTT
TCCTTTATTAATCGACTCACGAAACATCATGGTAGTTAAGACCTTTCCTT
CACTGGTCGCCCGCCATAAGCGCAATCCAGGCCGCGCGGCGTACACATCA
ACAAC
Run BLAST on NCBI

transcript from alignment at sc0000726:161279..163316-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029154 ID=TCONS_00029154|Name=TCONS_00029154|organism=Clytia hemisphaerica|type=transcript|length=2038bp|location=Sequence derived from alignment at sc0000726:161279..163316- (Clytia hemisphaerica)
CTTTCTTTGGTTTCTTCCTTTTCTTTTTCTTTCGCGTGGTGCTAACGGAC
GTTCCCTCAAACACAATATCTTTGGCAAACTCTTCTTTATTGAGGTGACT
AAACACTGGTTCCTCTTCTCGCGTTTTATGCGTTAATATAACGTCTATGG
TTTGGTTTTGCGCTCCCTGCTGTCCTTCGGGATTTGTCGGTGTTATTTGG
CCTGGACTTAAAGCCGAATCACTAGTATCGTTTTTAACGTTCGTAAGGCC
GTCCAATGAAATCCCATCTGTTTCATTGACCGTAACGTCATTTAATAATG
GAGATTTCGAAGAGTCTAAACTTTTGTTTGGCGAACTAAACGATTCGTTG
CTGGACGATTCAAAAGGTCGATCACTAAAATCATTTTCGTCTGTTGAATT
TCCGTTACCGGTTGAATAGCCTTCACTGGTTGCCAGGCAACGCTCACCGT
ACGCATCCTTTTTGTAGTAAGCTTTAGGGCTTGAGAAGCGGTCGGATTCT
GAGCCGCGATCATCTTCAGACACTTCTCGCGATCTAATCTGCTCTGTGAT
TCCTTTAACACGAGTTTTAACGTCAAAGAATNGTCGAATTGCCGGCACCG
AGCTGCTGTCTACACTGTGATCTAATTTAGCAAAGATGGCAGATTATTTT
GCTCCAATATAATAAAATAAATAGAAATAAAATAGCTCCATCATCATTGT
TTAATATAAGATATCTGTGTCCCAAACAGGTGGAAGGTTGAATTCAGAGA
ATCGATTCACTTGATAAATCAAAAGGGGCCAGAGCTAGGGTCATTGTATG
AGAGAAATATACCTTTCTTCGGTTGAAACTTTGGTGAATTTTGAGACGGA
AAAGCCTCTTTATAAACTTCGCTAAGGCGGAATACCGTCTGAAACGCAAG
AGCTTTCAATACTGTATTATAAAGAAATACCTTTCTTTGGTTTCTTCCTT
TTCTTTTTCTTTCGCGTGGTGCTAACGGACGTTCCCTCAAACACAATATC
TTTGGCAAACTCTTCTTTATTGAGGTGACTAAACACTGGTTCCTCTTCTC
GCGTTTTATGCGTTAATATAACGTCTATGGTTTGGTTTTGCGGCACTTGT
TGCTGTCCTTCGGGATTTGTCGGTGTTATTTGGCCTGGACTTAAAGCCGA
ATCACTAGTATCGTTTTTAACGTTCGTAAGGCCGTCTACCAATGACATCG
CATCTGTTTCATTGACCGTAACATTTAATAATGGAGATTTCGAAGAGTCT
AAACTTTTGTTTGGCGAACTAAAGGATTCGTTACTTGATGATTCGAAAGG
TCGATCACTAAAATCGTTTTCGTCTGTTGAATTCCCGTTACCGGTTGAAT
AGCCTTCACTGGTTGCCAGGCAACGTTCACCATACGCATCTTTTTTGTAG
TAAGCTTTAGGGCTTGAGAAGCGGTCAGATTCTGAGCCGCGATCATCCTC
GGAGACTTCTCGCGATCTAATCTGCTCTGTGATTCCTTTAACACGAGTTT
TAACGTCAAAGAAAGCGCGACCCATTTTATTACCGACTTCGTCGAGGATT
TTATCAATCTTGTCCTGGTCCTCAAAGGAGTTGACGGAACCGTGTCGTTG
TGCTTTCATCACATCTGATGGGTTATTCAAATCAAGTTCTTCAACAACGA
TGCACGGATTTACTTCAAATAAAATCCTGCGTACAAAGTTCTCTTTGCTT
TTCGACAAAACAAATATCTCGTTATCCACTACGCCAACGTCGACGACGCA
CCCCAAGTTACTATGACAACCGACTACGACGCCTGTAGTCGGGTCCAGCA
CCCATACATTCGAACCTTGCCACGTGATTAAAAATTGATCGTGAAACGTT
TTGATTGGTCCAAATTGACGTTGTTCACCGTGGGCCGATACCGGTAAATT
GGATTGTAAATCAATAGTCTGGATTTCCGGTTTTCCTTTATTAATCGACT
CACGAAACATCATGGTAGTTAAGACCTTTCCTTCACTGGTCGCCCGCCAT
AAGCGCAATCCAGGCCGCGCGGCGTACACATCAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016584XLOC_016584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029154-exon-sc0000726-1575043694:162735..163316TCONS_00029154-exon-sc0000726-1575043694:162735..163316Clytia hemisphaericaexon
TCONS_00029154-exon-sc0000726-1575043694:161279..161801TCONS_00029154-exon-sc0000726-1575043694:161279..161801Clytia hemisphaericaexon
TCONS_00029154-exon-sc0000726-1510915933:162735..163316TCONS_00029154-exon-sc0000726-1510915933:162735..163316Clytia hemisphaericaexon
TCONS_00029154-exon-sc0000726-1510915933:161279..161801TCONS_00029154-exon-sc0000726-1510915933:161279..161801Clytia hemisphaericaexon
TCONS_00029154-exon-sc0000726-1491911889:162735..163316TCONS_00029154-exon-sc0000726-1491911889:162735..163316Clytia hemisphaericaexon
TCONS_00029154-exon-sc0000726-1491911889:161279..161801TCONS_00029154-exon-sc0000726-1491911889:161279..161801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:161279..163316 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.92076	1.53275	11.9635	11.2163	18.2485	12.6063	9.58705	9.8742	5.25503	8.46295	6.20141	5.50197	5.81237	5.55913	6.16501	11.5771	5.16295	7.18308	7.71741	10.7316	3.20078	4.23878	2.57984	4.75256	3.73504	3.85372	16.6233	10.8816	3.81967	3.90428
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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