TCONS_00029158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029158
Unique NameTCONS_00029158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029158 ID=TCONS_00029158|Name=TCONS_00029158|organism=Clytia hemisphaerica|type=transcript|length=536bp
ACTCTCAATAGCAAAAAGATACCTTaaagggaaaaaatttttgcaggaaa
aatttatgtgtttaaaacAAGCGGTTTTTCACCAAATCAgcgaaacacaa
atattctcaGGTTGGGTCAATATATAGgtatttttactgatttttagggt
aaaattgggaaaaattctCTCAACCACGAAATTTAATTCCATAAAACCTC
TGAATTTCGAGCTAGCAACCAATATTTCTTCCTGCAAAAAGTTCTTTTCT
TATAATAAGGTAGTAAAAAAGAgcacaaaatttgagaaatcattTTGTCG
ATTCTTCTGTCTCATCATATAGCACTCTCCTAACCaactattgaaaattt
taacaaataatGTGAAATGAtagaaatataatataaaagtGATAGCTAGA
CATTGtgaccaaagaaaaataaagtgcATATGAACTCTTTGTTCCTTTTT
TGGCTCTCTGACCAAATGACCAAATGGTTGTTTAGGAGAACCCATGCGAT
ACtatattgaataacaaattactccacataaaTTAC
Run BLAST on NCBI

transcript from alignment at sc0000726:19719..20254

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029158 ID=TCONS_00029158|Name=TCONS_00029158|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0000726:19719..20254 (Clytia hemisphaerica)
GTAAtttatgtggagtaatttgttattcaatataGTATCGCATGGGTTCT
CCTAAACAACCATTTGGTCATTTGGTCAGAGAGCCAAAAAAGGAACAAAG
AGTTCATATgcactttatttttctttggtcaCAATGTCTAGCTATCactt
ttatattatatttctaTCATTTCACattatttgttaaaattttcaatagt
tGGTTAGGAGAGTGCTATATGATGAGACAGAAGAATCGACAAaatgattt
ctcaaattttgtgcTCTTTTTTACTACCTTATTATAAGAAAAGAACTTTT
TGCAGGAAGAAATATTGGTTGCTAGCTCGAAATTCAGAGGTTTTATGGAA
TTAAATTTCGTGGTTGAGagaatttttcccaattttaccctaaaaatcag
taaaaatacCTATATATTGACCCAACCtgagaatatttgtgtttcgcTGA
TTTGGTGAAAAACCGCTTgttttaaacacataaatttttcctgcaaaaat
tttttccctttAAGGTATCTTTTTGCTATTGAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016588XLOC_016588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029158-exon-sc0000726-1491911889:19719..20254TCONS_00029158-exon-sc0000726-1491911889:19719..20254Clytia hemisphaericaexon
TCONS_00029158-exon-sc0000726-1510915933:19719..20254TCONS_00029158-exon-sc0000726-1510915933:19719..20254Clytia hemisphaericaexon
TCONS_00029158-exon-sc0000726-1575043694:19719..20254TCONS_00029158-exon-sc0000726-1575043694:19719..20254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:19719..20254 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0906323	0	0	0	0.330276	0	0.335597	0	0	0	0	0.11328	0.267513	0.0439433	0	0	0	0	0	0.209798	0	0.373193	0	0	0	0	0.136008	0	0.12269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top