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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029164 ID=TCONS_00029164|Name=TCONS_00029164|organism=Clytia hemisphaerica|type=transcript|length=2005bp
AGCAAATCCGtgccactagatccagtccctttttagagaaaaacaaacag
aaaaacaTGACCAATGAaccatttttatcaaattttggaggtattttcat
gtttttattatagttttATAAACTTTGATGGGGTTTAGAATAAGAttgat
tgttttgttgttttcatagattttttgaaaacgaaCGTAAACAAATTCAA
GTTGGCTGAATTCCCATAGTCGACTTCGCTAGACtcagcgccatcaaaat
catcaggaAGCTAAGTTCAGTCAGAAGAAGACTCTAGTCTACTGCACAGG
TGACTGAGgctcgattcccactcgcagggTTCACTTGTGGCAAGAGTGAA
CGAACCTTTGAAACTGgatcaacccatgccatgtgaggggaattgggtca
GTCCAAGGTGATGACACTGGGCGCTCATTGAAACCTTTAATAGTTGCAAA
AATAGGCCTTAAAGCCTCCTgtctgcaactcaaccaaatagaaatagaaa
tatataTATAGGTTTGCAATTGCTGACGTATTGGATGGGTGGAATTTGCT
AGATGGTAATTTGGCTGGATGGGATGGGCTGTTTGAATAGCAATTCGAAT
GGGTGGATGGATATCTGGCTGGGTGGGGAGAGTTGAGCTGGTGGGTTTAT
CAACGAAGCGGGATCAACATGGATTGACAGACATGTGGTGGCGGTGGATG
GGGTCAGTCAGGTCAgtcaatttatttttcacaatCCATGGCATGTGGCT
TGGATTGGCTGCTGGGTGGATAGGGATCACCTGAGTGGATGGGGATTGGG
CTAGGTGGATTGGAATTTGGCCTTGTGGATTGGGACCACCTGGGTGGATT
GGGGGGTGTCTGGGTAGATGGGGATAGGGTTTGGCTGGGTGAATGGACTT
GATGGCATTGCATGCGTTGATGGCATTGCGCTGGACAAATAGGGATCACC
TGGATGGATTGAATCACCCATGCGGATGGGATAATTTTGCATGGTGGATA
GGATCAGCTGGGTGAATAGGAATCGCTTGGGTAAATGGAATCACTTGGGA
TGGATTTGCTGGGAGGATGGAATTACCCGGATGGATGGGATTTTCTGTGC
AGCAGATGGCATTTGGTCAGGTAGATGGGGTTTGCTGGGTGAATAGGATT
GGACGAGCTTAAGATTGCATTTTACTGAGTTGgaccttttaaattttgat
caatttattTAATCATAGCTTTTTTTAGCTTCAAGTTTATCgtataaaat
taaataaaaatggcCGAATCAATAGAAGATATATGGAAAGAGCTTCAGGG
TAAAAAAGAGCCTAAGGAAGAgttgaaaaaagaattattgGATAATCTAA
TTGATCCTCTGATGCCactaagaaaaaaatctaaaggcAAAACATTATAT
GGTGATAGAGACCCAAAGAAAAAAAGGTATCCCCGCAAAAAGACATCAAG
GAAAGgAAATACTGCAAATATGGATGTTTTTGAATCTGGAAGTGAATTTA
TTATTGACGATAATGATCAGGATCAGGGTTGCAGTGATTCCAATGATGTT
ACCAATGATGAAGATGttttaatGGACATTTTGGATGAGGCGAAAGAATT
GCTTGGCCCTGTTAAAAAGCGAACTTGGGGACAAAGAATAGAAAATTCGG
AAAGTAATTGGTTTGCAGCTAGAGAATATTTGCTTGAAGAACTGGTCAAA
AGAGAGGAACGACCATCATCGCTATGCTATAAATGTTTTAAAGCTGAAGC
TACAATAAAATGTGTTACCTGCTCTCCTTTTTTACTGCTCTGTCCTGATT
GTGACTTCGACTTTCATCAATCAATCATCTTCCACGATCGTCAATGGTTC
AACGGTTATTTCAAGCCACTGAAACCAGATGAGCATATTAAAGATGGTGA
AATAATCACAATACcTAAACCAATGCTGTTATTTAAAGATTGTGTCTCAT
GCGGTCATCTTTGTGATAACTGTGAAATAAGAACAATGAACGCTCAAATA
GCTGT Run BLAST on NCBI protein sequence of TCONS_00029164-protein >TCONS_00029164-protein ID=TCONS_00029164-protein|Name=TCONS_00029164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MAESIEDIWKELQGKKEPKEELKKELLDNLIDPLMPLRKKSKGKTLYGDR
DPKKKRYPRKKTSRKGNTANMDVFESGSEFIIDDNDQDQGCSDSNDVTND
EDVLMDILDEAKELLGPVKKRTWGQRIENSESNWFAAREYLLEELVKREE
RPSSLCYKCFKAEATIKCVTCSPFLLLCPDCDFDFHQSIIFHDRQWFNGY
FKPLKPDEHIKDGEIITIPKPMLLFKDCVSCGHLCDNCEIRTMNAQIA Run BLAST on NCBI transcript from alignment at sc0000727:21058..23483+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029164 ID=TCONS_00029164|Name=TCONS_00029164|organism=Clytia hemisphaerica|type=transcript|length=2426bp|location=Sequence derived from alignment at sc0000727:21058..23483+ (Clytia hemisphaerica)
AGCAAATCCGtgccactagatccagtccctttttagagaaaaacaaacag
aaaaacaTGACCAATGAaccatttttatcaaattttggaggtattttcat
gtttttattatagttttATAAACTTTGATGGGGTTTAGAATAAGAttgat
tgttttgttgttttcatagattttttgaaaacgaaCGTAAACAAATTCAA
GTTGGCTGAATTCCCATAGTCGACTTCGCTAGACtcagcgccatcaaaat
catcaggaAGCTAAGTTCAGTCAGAAGAAGACTCTAGTCTACTGCACAGG
TGACTGAGgctcgattcccactcgcagggTTCACTTGTGGCAAGAGTGAA
CGAACCTTTGAAACTGgatcaacccatgccatgtgaggggaattgggtca
GTCCAAGGTGATGACACTGGGCGCTCATTGAAACCTTTAATAGTTGCAAA
AATAGGCCTTAAAGCCTCCTgtctgcaactcaaccaaatagaaatagaaa
tatataTATAGGTTTGCAATTGCTGACGTATTGGATGGGTGGAATTTGCT
AGATGGTAATTTGGCTGGATGGGATGGGCTGTTTGAATAGCAATTCGAAT
GGGTGGATGGATATCTGGCTGGGTGGGGAGAGTTGAGCTGGTGGGTTTAT
CAACGAAGCGGGATCAACATGGATTGACAGACATGTGGTGGCGGTGGATG
GGGTCAGTCAGGTCAgtcaatttatttttcacaatCCATGGCATGTGGCT
TGGATTGGCTGCTGGGTGGATAGGGATCACCTGAGTGGATGGGGATTGGG
CTAGGTGGATTGGAATTTGGCCTTGTGGATTGGGACCACCTGGGTGGATT
GGGGGGTGTCTGGGTAGATGGGGATAGGGTTTGGCTGGGTGAATGGACTT
GATGGCATTGCATGCGTTGATGGCATTGCGCTGGACAAATAGGGATCACC
TGGATGGATTGAATCACCCATGCGGATGGGATAATTTTGCATGGTGGATA
GGATCAGCTGGGTGAATAGGAATCGCTTGGGTAAATGGAATCACTTGGGA
TGGATTTGCTGGGAGGATGGAATTACCCGGATGGATGGGATTTTCTGTGC
AGCAGATGGCATTTGGTCAGGTAGATGGGGTTTGCTGGGTGAATAGGATT
GGACGAGCTTAAGATTGCATTTTACTGAGTTGgaccttttaaattttgat
caatttattTAATCATAGCTTTTTTTAGCTTCAAGTTTATCgtataaaat
taaataaaaatggcCGAATCAATAGAAGATATATGGAAAGAGCTTCAGGG
TAAAAAAGAGCCTAAGGAAGAgttgaaaaaagaattattgGATAATCTAA
TTGATCCTCTGATGCCactaagaaaaaaatctaaaggcAAAACATTATAT
GGTGATAGAGACCCAAAGAAAAAAAGGTATCCCCGCAAAAAGACATCAAG
GAAAGGTAAGTATCAAACCTTTATGGTTTACTTTTCTGTTAACGttattt
aaaacctttaaagcaAACAACATTTTGTCGCAAAGTTACTTTGTTCTTTT
AAGATTAAAATCTactaattttccaattttcaggAAATACTGCAAATATG
GATGTTTTTGAATCTGGAAGTGAATTTATTATTGACGATAATGATCAGGA
TCAGGGTTGCAGTGATTCCAATGATGTTACCAATGATGAAGATGGTAAAT
AtatcatttttctaaaatgaaaactttttctttgacatTGCTTTTTGAAT
ATGTTAATCAAAATACGACCTACCAAAATTGATTTACCAGAAAGTAATTT
CATATTCAagttaactttttataaaaatttaagttaagtttttcatcaaa
atcgattttttattagttttaatGGACATTTTGGATGAGGCGAAAGAATT
GCTTGGCCCTGTTAAAAAGCGAACTTGGGGACAAAGAATAGAAAATTCGG
AAAGTAATTGGTTTGCAGCTAGAGAATATTTGCTTGAAGAACTGGTCAAA
AGAGAGGAACGACCATCATCGCTATGCTATAAATGTTTTAAAGCTGAAGC
TACAATAAAATGTGTTACCTGCTCTCCTTTTTTACTGCTCTGTCCTGATT
GTGACTTCGACTTTCATCAATCAATCATCTTCCACGATCGTCAATGGTTC
AACGGTTATTTCAAGCCACTGAAACCAGATGAGCATATTAAAGATGGTGA
AATAATCACAATACGTAAACCTTTTTTTTACTCTTACTGCATAGGATTTG
GAAGATTAGAACTagaaataaacattttattcttctttcttttgctgaaa
atgttgaaaatctgagaattgttgatattttttagcTAAACCAATGCTGT
TATTTAAAGATTGTGTCTCATGCGGTCATCTTTGTGATAACTGTGAAATA
AGAACAATGAACGCTCAAATAGCTGT Coding sequence (CDS) from alignment at sc0000727:21058..23483+ >TCONS_00029164 ID=TCONS_00029164|Name=TCONS_00029164|organism=Clytia hemisphaerica|type=CDS|length=2976bp|location=Sequence derived from alignment at sc0000727:21058..23483+ (Clytia hemisphaerica)
atggcCGAATCAATAGAAGATATATGGAAAGAGCTTCAGGGTAAAAAAGA
GCCTAAGGAAGAgttgaaaaaagaattattgGATAATCTAATTGATCCTC
TGATGCCactaagaaaaaaatctaaaggcAAAACATTATATGGTGATAGA
GACCCAAAGAAAAAAAGGTATCCCCGCAAAAAGACATCAAGGAAAGgAAA
TACTGCAAATATGGATGTTTTTGAATCTGGAAGTGAATTTATTATTGACG
ATAATGATCAGGATCAGGGTTGCAGTGATTCCAATGATGTTACCAATGAT
GAAGATGttttaatGGACATTTTGGATGAGGCGAAAGAATTGCTTGGCCC
TGTTAAAAAGCGAACTTGGGGACAAAGAATAGAAAATTCGGAAAGTAATT
GGTTTGCAGCTAGAGAATATTTGCTTGAAGAACTGGTCAAAAGAGAGGAA
CGACCATCATCGCTATGCTATAAATGTTTTAAAGCTGAAGCTACAATAAA
ATGTGTTACCTGCTCTCCTTTTTTACTGCTCTGTCCTGATTGTGACTTCG
ACTTTCATCAATCAATCATCTTCCACGATCGTCAATGGTTCAACGGTTAT
TTCAAGCCACTGAAACCAGATGAGCATATTAAAGATGGTGAAATAATCAC
AATACcTAAACCAATGCTGTTATTTAAAGATTGTGTCTCATGCGGTCATC
TTTGTGATAACTGTGAAATAAGAACAATGAACGCTCAAATAGCTatggcC
GAATCAATAGAAGATATATGGAAAGAGCTTCAGGGTAAAAAAGAGCCTAA
GGAAGAgttgaaaaaagaattattgGATAATCTAATTGATCCTCTGATGC
CactaagaaaaaaatctaaaggcAAAACATTATATGGTGATAGAGACCCA
AAGAAAAAAAGGTATCCCCGCAAAAAGACATCAAGGAAAGgAAATACTGC
AAATATGGATGTTTTTGAATCTGGAAGTGAATTTATTATTGACGATAATG
ATCAGGATCAGGGTTGCAGTGATTCCAATGATGTTACCAATGATGAAGAT
GttttaatGGACATTTTGGATGAGGCGAAAGAATTGCTTGGCCCTGTTAA
AAAGCGAACTTGGGGACAAAGAATAGAAAATTCGGAAAGTAATTGGTTTG
CAGCTAGAGAATATTTGCTTGAAGAACTGGTCAAAAGAGAGGAACGACCA
TCATCGCTATGCTATAAATGTTTTAAAGCTGAAGCTACAATAAAATGTGT
TACCTGCTCTCCTTTTTTACTGCTCTGTCCTGATTGTGACTTCGACTTTC
ATCAATCAATCATCTTCCACGATCGTCAATGGTTCAACGGTTATTTCAAG
CCACTGAAACCAGATGAGCATATTAAAGATGGTGAAATAATCACAATACc
TAAACCAATGCTGTTATTTAAAGATTGTGTCTCATGCGGTCATCTTTGTG
ATAACTGTGAAATAAGAACAATGAACGCTCAAATAGCTatggcCGAATCA
ATAGAAGATATATGGAAAGAGCTTCAGGGTAAAAAAGAGCCTAAGGAAGA
gttgaaaaaagaattattgGATAATCTAATTGATCCTCTGATGCCactaa
gaaaaaaatctaaaggcAAAACATTATATGGTGATAGAGACCCAAAGAAA
AAAAGGTATCCCCGCAAAAAGACATCAAGGAAAGgAAATACTGCAAATAT
GGATGTTTTTGAATCTGGAAGTGAATTTATTATTGACGATAATGATCAGG
ATCAGGGTTGCAGTGATTCCAATGATGTTACCAATGATGAAGATGtttta
atGGACATTTTGGATGAGGCGAAAGAATTGCTTGGCCCTGTTAAAAAGCG
AACTTGGGGACAAAGAATAGAAAATTCGGAAAGTAATTGGTTTGCAGCTA
GAGAATATTTGCTTGAAGAACTGGTCAAAAGAGAGGAACGACCATCATCG
CTATGCTATAAATGTTTTAAAGCTGAAGCTACAATAAAATGTGTTACCTG
CTCTCCTTTTTTACTGCTCTGTCCTGATTGTGACTTCGACTTTCATCAAT
CAATCATCTTCCACGATCGTCAATGGTTCAACGGTTATTTCAAGCCACTG
AAACCAGATGAGCATATTAAAGATGGTGAAATAATCACAATACcTAAACC
AATGCTGTTATTTAAAGATTGTGTCTCATGCGGTCATCTTTGTGATAACT
GTGAAATAAGAACAATGAACGCTCAAATAGCTatggcCGAATCAATAGAA
GATATATGGAAAGAGCTTCAGGGTAAAAAAGAGCCTAAGGAAGAgttgaa
aaaagaattattgGATAATCTAATTGATCCTCTGATGCCactaagaaaaa
aatctaaaggcAAAACATTATATGGTGATAGAGACCCAAAGAAAAAAAGG
TATCCCCGCAAAAAGACATCAAGGAAAGgAAATACTGCAAATATGGATGT
TTTTGAATCTGGAAGTGAATTTATTATTGACGATAATGATCAGGATCAGG
GTTGCAGTGATTCCAATGATGTTACCAATGATGAAGATGttttaatGGAC
ATTTTGGATGAGGCGAAAGAATTGCTTGGCCCTGTTAAAAAGCGAACTTG
GGGACAAAGAATAGAAAATTCGGAAAGTAATTGGTTTGCAGCTAGAGAAT
ATTTGCTTGAAGAACTGGTCAAAAGAGAGGAACGACCATCATCGCTATGC
TATAAATGTTTTAAAGCTGAAGCTACAATAAAATGTGTTACCTGCTCTCC
TTTTTTACTGCTCTGTCCTGATTGTGACTTCGACTTTCATCAATCAATCA
TCTTCCACGATCGTCAATGGTTCAACGGTTATTTCAAGCCACTGAAACCA
GATGAGCATATTAAAGATGGTGAAATAATCACAATACcTAAACCAATGCT
GTTATTTAAAGATTGTGTCTCATGCGGTCATCTTTGTGATAACTGTGAAA
TAAGAACAATGAACGCTCAAATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029164-exon-sc0000727-1491911889:21058..22512 | TCONS_00029164-exon-sc0000727-1491911889:21058..22512 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1510915933:21058..22512 | TCONS_00029164-exon-sc0000727-1510915933:21058..22512 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1575043694:21058..22512 | TCONS_00029164-exon-sc0000727-1575043694:21058..22512 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1491911889:22641..22751 | TCONS_00029164-exon-sc0000727-1491911889:22641..22751 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1510915933:22641..22751 | TCONS_00029164-exon-sc0000727-1510915933:22641..22751 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1575043694:22641..22751 | TCONS_00029164-exon-sc0000727-1575043694:22641..22751 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1491911889:22924..23271 | TCONS_00029164-exon-sc0000727-1491911889:22924..23271 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1510915933:22924..23271 | TCONS_00029164-exon-sc0000727-1510915933:22924..23271 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1575043694:22924..23271 | TCONS_00029164-exon-sc0000727-1575043694:22924..23271 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1491911889:23393..23483 | TCONS_00029164-exon-sc0000727-1491911889:23393..23483 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1510915933:23393..23483 | TCONS_00029164-exon-sc0000727-1510915933:23393..23483 | Clytia hemisphaerica | exon |
| TCONS_00029164-exon-sc0000727-1575043694:23393..23483 | TCONS_00029164-exon-sc0000727-1575043694:23393..23483 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000727 | supercontig | sc0000727:21058..23483 + |
Blast
The following BLAST results are available for this feature:
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