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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029165 ID=TCONS_00029165|Name=TCONS_00029165|organism=Clytia hemisphaerica|type=transcript|length=1295bp
ACTGgatcaacccatgccatgtgaggggaattgggtcaGTCCAAGGTGAT
GACACTGGGCGCTCATTGAAACCTTTAATAGTTGCAAAAATAGGCCTTAA
AGCCTCCTgtctgcaactcaaccaaatagaaatagaaatatataTATAGG
TTTGCAATTGCTGACGTATTGGATGGGTGGAATTTGCTAGATGGTAATTT
GGCTGGATGGGATGGGCTGTTTGAATAGCAATTCGAATGGGTGGATGGAT
ATCTGGCTGGGTGGGGAGAGTTGAGCTGGTGGGTTTATCAACGAAGCGGG
ATCAACATGGATTGACAGACATGTGGTGGCGGTGGATGGGGTCAGTCAGG
TCAgtcaatttatttttcacaatCCATGGCATGTGGCTTGGATTGGCTGC
TGGGTGGATAGGGATCACCTGAGTGGATGGGGATTGGGCTAGGTGGATTG
GAATTTGGCCTTGTGGATTGGGACCACCTGGGTGGATTGGGGGGTGTCTG
GGTAGATGGGGATAGGGTTTGGCTGGGTGAATGGACTTGATGGCATTGCA
TGCGTTGATGGCATTGCGCTGGACAAATAGGGATCACCTGGATGGATTGA
ATCACCCATGCGGATGGGATAATTTTGCATGGTGGATAGGATCAGCTGGG
TGAATAGGAATCGCTTGGGTAAATGGAATCACTTGGGATGGATTTGCTGG
GAGGATGGAATTACCCGGATGGATGGGATTTTCTGTGCAGCAGATGGCAT
TTGGTCAGGTAGATGGGGTTTGCTGGGTGAATAGGATTGGACGAGCTTAA
GATTGCATTTTACTGAGTTGgaccttttaaattttgatcaatttattTAA
TCATAGCTTTTTTTAGCTTCAAGTTTATCgtataaaattaaataaaaatg
gcCGAATCAATAGAAGATATATGGAAAGAGCTTCAGGGTAAAAAAGAGCC
TAAGGAAGAgttgaaaaaagaattattgGATAATCTAATTGATCCTCTGA
TGCCactaagaaaaaaatctaaaggcAAAACATTATATGGTGATAGAGAC
CCAAAGAAAAAAAGGTATCCCCGCAAAAAGACATCAAGGAAAGgAAATAC
TGCAAATATGGATGTTTTTGAATCTGGAAGTGAATTTATTATTGACGATA
ATGATCAGGATCAGGGTTGCAGTGATTCCAATGATGTTACCAATGATGAA
GATGcTAAACCAATGCTGTTATTTAAAGATTGTGTCTCATGCGGTCATCT
TTGTGATAACTGTGAAATAAGAACAATGAACGCTCAAATAGCTGT Run BLAST on NCBI transcript from alignment at sc0000727:21420..23483+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029165 ID=TCONS_00029165|Name=TCONS_00029165|organism=Clytia hemisphaerica|type=transcript|length=2064bp|location=Sequence derived from alignment at sc0000727:21420..23483+ (Clytia hemisphaerica)
ACTGgatcaacccatgccatgtgaggggaattgggtcaGTCCAAGGTGAT
GACACTGGGCGCTCATTGAAACCTTTAATAGTTGCAAAAATAGGCCTTAA
AGCCTCCTgtctgcaactcaaccaaatagaaatagaaatatataTATAGG
TTTGCAATTGCTGACGTATTGGATGGGTGGAATTTGCTAGATGGTAATTT
GGCTGGATGGGATGGGCTGTTTGAATAGCAATTCGAATGGGTGGATGGAT
ATCTGGCTGGGTGGGGAGAGTTGAGCTGGTGGGTTTATCAACGAAGCGGG
ATCAACATGGATTGACAGACATGTGGTGGCGGTGGATGGGGTCAGTCAGG
TCAgtcaatttatttttcacaatCCATGGCATGTGGCTTGGATTGGCTGC
TGGGTGGATAGGGATCACCTGAGTGGATGGGGATTGGGCTAGGTGGATTG
GAATTTGGCCTTGTGGATTGGGACCACCTGGGTGGATTGGGGGGTGTCTG
GGTAGATGGGGATAGGGTTTGGCTGGGTGAATGGACTTGATGGCATTGCA
TGCGTTGATGGCATTGCGCTGGACAAATAGGGATCACCTGGATGGATTGA
ATCACCCATGCGGATGGGATAATTTTGCATGGTGGATAGGATCAGCTGGG
TGAATAGGAATCGCTTGGGTAAATGGAATCACTTGGGATGGATTTGCTGG
GAGGATGGAATTACCCGGATGGATGGGATTTTCTGTGCAGCAGATGGCAT
TTGGTCAGGTAGATGGGGTTTGCTGGGTGAATAGGATTGGACGAGCTTAA
GATTGCATTTTACTGAGTTGgaccttttaaattttgatcaatttattTAA
TCATAGCTTTTTTTAGCTTCAAGTTTATCgtataaaattaaataaaaatg
gcCGAATCAATAGAAGATATATGGAAAGAGCTTCAGGGTAAAAAAGAGCC
TAAGGAAGAgttgaaaaaagaattattgGATAATCTAATTGATCCTCTGA
TGCCactaagaaaaaaatctaaaggcAAAACATTATATGGTGATAGAGAC
CCAAAGAAAAAAAGGTATCCCCGCAAAAAGACATCAAGGAAAGGTAAGTA
TCAAACCTTTATGGTTTACTTTTCTGTTAACGttatttaaaacctttaaa
gcaAACAACATTTTGTCGCAAAGTTACTTTGTTCTTTTAAGATTAAAATC
TactaattttccaattttcaggAAATACTGCAAATATGGATGTTTTTGAA
TCTGGAAGTGAATTTATTATTGACGATAATGATCAGGATCAGGGTTGCAG
TGATTCCAATGATGTTACCAATGATGAAGATGGTAAATAtatcatttttc
taaaatgaaaactttttctttgacatTGCTTTTTGAATATGTTAATCAAA
ATACGACCTACCAAAATTGATTTACCAGAAAGTAATTTCATATTCAagtt
aactttttataaaaatttaagttaagtttttcatcaaaatcgatttttta
ttagttttaatGGACATTTTGGATGAGGCGAAAGAATTGCTTGGCCCTGT
TAAAAAGCGAACTTGGGGACAAAGAATAGAAAATTCGGAAAGTAATTGGT
TTGCAGCTAGAGAATATTTGCTTGAAGAACTGGTCAAAAGAGAGGAACGA
CCATCATCGCTATGCTATAAATGTTTTAAAGCTGAAGCTACAATAAAATG
TGTTACCTGCTCTCCTTTTTTACTGCTCTGTCCTGATTGTGACTTCGACT
TTCATCAATCAATCATCTTCCACGATCGTCAATGGTTCAACGGTTATTTC
AAGCCACTGAAACCAGATGAGCATATTAAAGATGGTGAAATAATCACAAT
ACGTAAACCTTTTTTTTACTCTTACTGCATAGGATTTGGAAGATTAGAAC
Tagaaataaacattttattcttctttcttttgctgaaaatgttgaaaatc
tgagaattgttgatattttttagcTAAACCAATGCTGTTATTTAAAGATT
GTGTCTCATGCGGTCATCTTTGTGATAACTGTGAAATAAGAACAATGAAC
GCTCAAATAGCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029165-exon-sc0000727-1491911889:21420..22512 | TCONS_00029165-exon-sc0000727-1491911889:21420..22512 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1510915933:21420..22512 | TCONS_00029165-exon-sc0000727-1510915933:21420..22512 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1575043694:21420..22512 | TCONS_00029165-exon-sc0000727-1575043694:21420..22512 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1491911889:22641..22751 | TCONS_00029165-exon-sc0000727-1491911889:22641..22751 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1510915933:22641..22751 | TCONS_00029165-exon-sc0000727-1510915933:22641..22751 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1575043694:22641..22751 | TCONS_00029165-exon-sc0000727-1575043694:22641..22751 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1491911889:23393..23483 | TCONS_00029165-exon-sc0000727-1491911889:23393..23483 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1510915933:23393..23483 | TCONS_00029165-exon-sc0000727-1510915933:23393..23483 | Clytia hemisphaerica | exon |
| TCONS_00029165-exon-sc0000727-1575043694:23393..23483 | TCONS_00029165-exon-sc0000727-1575043694:23393..23483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000727 | supercontig | sc0000727:21420..23483 + |
Blast
The following BLAST results are available for this feature:
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