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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029167 ID=TCONS_00029167|Name=TCONS_00029167|organism=Clytia hemisphaerica|type=transcript|length=824bp
ACTGGACTTGACAAAGGCGAGATGGTTCGTTTGGCGCACAACAGGGTCAG
ATGGAAAGACATGGTCATGTCATCACTTTCAAGTGGATGatttatgtatA
ATGGTTGACAgaatagaaaagaacattttgtATGAAGATTTTGTTGCACA
ACATTTAAAAGAGAATAAACCTTGCATTTTCTCGTCTAATTTAATCGCTG
ATTGGAAATGTGTAAACAGTTGGGTGAAAAGTGATCATCTCAATactgat
tttattgaaaagcatTTTGGAAACTTGACAGCGCCAGTGATGGATTGCAA
TAAACAATATTTCTCATCACATGAAAAGGAAGATATGAAGGTATCAGAAT
TTATCAAATATTGGAATGATCGTGATGATAGATTACTTTATTTGAAAGAC
TGGCATTTACAAAAGCTAACTGATGAAAGGTTTTATGACATTCCCACTTT
TTTCACTTCTGACTGGCTAAATGAATACTTTGACAGAGATGGCAAAGACG
ACTACAGGTTTGTTTACATTGGAGTTAAAGGAAGCTGGACTTCATTTCAC
GCTGATGTCTTTCGTTCATATAGCTGGTCAGCCAACATATGTGGTCTAAA
GAAATGGATATTCTTTCCGCCTGGAGAAGAAGATAAATTGAGAGACAATT
TTGGAAATCTCCCCTTTGATGTTTCTTCATTGTCCCTAGACGAAATGGAC
ATAACTTATTTCGTAACTTTCCAAAAGTCTGGTGAAGTAATTTTTGTTCC
TAGTGGTTGGCATCATCAGGTATTTAATTTGGAAGACACTGTCTCCATCA
ATCATAATTGGGTTAATGCtttca Run BLAST on NCBI protein sequence of TCONS_00029167-protein >TCONS_00029167-protein ID=TCONS_00029167-protein|Name=TCONS_00029167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
LDLTKARWFVWRTTGSDGKTWSCHHFQVDDLCIMVDRIEKNILYEDFVAQ
HLKENKPCIFSSNLIADWKCVNSWVKSDHLNTDFIEKHFGNLTAPVMDCN
KQYFSSHEKEDMKVSEFIKYWNDRDDRLLYLKDWHLQKLTDERFYDIPTF
FTSDWLNEYFDRDGKDDYRFVYIGVKGSWTSFHADVFRSYSWSANICGLK
KWIFFPPGEEDKLRDNFGNLPFDVSSLSLDEMDITYFVTFQKSGEVIFVP
SGWHHQVFNLEDTVSINHNWVNAF Run BLAST on NCBI transcript from alignment at sc0000727:62175..66146+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029167 ID=TCONS_00029167|Name=TCONS_00029167|organism=Clytia hemisphaerica|type=transcript|length=3972bp|location=Sequence derived from alignment at sc0000727:62175..66146+ (Clytia hemisphaerica)
ACTGGACTTGACAAAGGCGAGATGGTTCGTTTGGCGCACAACAGGGTCAG
ATGGAAAGACATGGTCATGTCATCACTTTCAAGTGGATGatttatgtatg
tatgtatgtattatgatatcacacaaataaattacggTAAGAAAATTTGC
GAGGACAACACGTggtcttaacatttttcccttgcaagtttggggggaaa
acgaaagtactctgtATAAtttacgtatggggaagtggaagaaagtttta
caaaatagaaaagtttggTTTTGGGGTTTGGGGTTAAAGAATCAGTAGTG
TGAATTTAAGcaagtttctattttgcaatttttttacagagccaaataaa
gattttttctattgttcttgctcgattgcctctaagGATAAGTTCCGTAG
GTATGAGGCTTTAGAGACATAATATGACGAATTTGCGGGaaaacgaaatt
taacattgCTCTAGTCTGCttggaaaatatttagattgttttattttgtt
caaatcAATAAGTAAAAGATATactaccttaagagaagaaattttcgcgg
aagaaattttcgcggaatttaatttcgcgaattggggcgtaattcgcgaa
attaaattccgcgaaacacaccaaaattgNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattgttaaatcgcgaaat
taaattccgcgaaattcgatttttttttcttcttcttttattttgttgtt
tttgaccaggtgttaccaaaaaagatggacacaaATGATTTATAACGCAT
ttaaacgtgtattttttatcaaatataaacaaatataagcaactccgtga
tgcttaaaagttaatctaagttgataacttcttctcaatcgcgaaattaa
attccgtgaaacttttgaaatcggctcattcgcgaaattaaattccgcga
aatttgccattttgaaactctgattcgcgaaattaaattccgcgaaaatt
tcttctcgtaaaaatttcttcccttaaggtatatataAACATAATGCTTA
caaaaaagattatttaataACAAATGATAATAATACACAAatatctcttt
aaaaaaagaaaaaatcataaacaatttattcatttatttatttatttatt
tattaagagagttacagtccaggcacacgagggcctcgAAACCgatcttg
taaaaaaaatttcttaaggTACAGTTTGTCACGAGGACTTCCCCACACCC
TCCAATTAAAATCTTCATTCGACTTGGCTTTATTCATCTCGTCAGCTCTT
CTTTTCCATTCTTTGATTTGCTCNGTAGGTATGAGGCTTTAGAGACATAA
TATGACGAATTTGTGGGaaaacgaaatttaacattgCTCTAGTCTGCttg
gaaaatatttagattgttttattttgttcaaatcAATAAGTAAAAGATAT
ACTATATATAAACATAATGCTTAcaaaaaagattatttaataACAAATGA
TAATAATACACAaatatctcttaaaaaaaagaaaaaatcataaacaattt
attcatttatttatttatttatttattattaaaagagttacagtccaggc
acacgaggacctctaaaccgatcttgtacaaaaatatttttaaggtaCAG
TTTGTCAAGAGAACTTCCCCACACCCTCCAATTAAAATCTTCATTCGACT
TGGCTTTATTCATCTCGTCAGCTCTTCTTTTCCATTCTTTGATTTGCTCT
CTCTCCATTTTGGTTAAATCGTCGGTGATGCTCAATTTTACGTATTTCTC
ATGCTGTCTTTGAATGCAACTTTGATTGGGCGCACACCATTTGATTGTTT
TCCAACTCGAGAGACGAAGGTTGGTTGAGCTTTTACGTTGACGTCGTTCA
AAAGTTTGTTCACGAAATCGatatcttctttattttctttttcacgcaCC
CAGTGGATGATGATGTTTGCGTCTATTGATAGCTTTCTTTGGTCTTCGAT
TTTTTCTTCGACTTTCTCCCTTCTAAGTAACTGCTTGATGTTTTTTAGGT
TCAACGAACCATTTACTTTTGCAGCGTCTGCAaaactttttgattctttt
gcCACTTGAACTTTCAAAGTCTTAGCATTCACTGTCTCTTCAATTTTGGT
GGATAGCTTCTTTTCCAGGATGGAAAATTGGCTCTGGATTAGATCAGTTA
CTTGATCAGGTATTCCTGACATCTTACCTGTAAGTCCTTGACCACGGTAT
TAAGTCTCTTTTCATTCTCACTTTTATGGTGTTTAATGCTTTCACATGCA
TCAATTTCTTTATAGCTGTGTGTACAGCATTCTATTCTTTCTGCTTGATG
ATGGATTTTTATGCTGAGGTCTTTTGCCGGAGAACAACAAGTTATGCATT
GGTATTTTCTGTAACCTTTATTCAAAAACATATTCAGCTGATATGCTGTC
CAGTGCAGGCATAATGTAGCATTCTTTGACAATTATGACAttgaatcttc
attttttcattatccTTAATGCAATTATGCTCCGTACAACGGTTGTTGTC
AATCTCTTCTTCATCAAGAGTCAGGTTCTTGTCAGGTGATGCCAGTTTTT
GTCTaaatttggttgttttttccattttttgaaattttattaaaaattct
ccatttttttgaaaaaaagaagagcaCAACCTTCCTGTTTGACGTTAAAC
TtattcctaatttttttttcaagcatctTTAGAAGAGAACTGAAGCTATA
TAAAATGAATacattcattttcatcttcCGCCTCTAATTTGAAGCCCTTC
CAGTCACAAAGCATTGTGGTGTAGAATCCTTGTTCCTATCCATAAAACAC
ACTTTTTATGAAGTGCCATTTTagctaatttttaattttgaagtttttgg
caTGCAGCCTTTCTAATTTAGATTTATTTGCGTCAGCAAAAAATTCTGGG
TTCTAAAGTacattaagagccattttttaaaaaaatcttcagaataaaga
aagtgtgatatCCACCCTCttatagattttgatgaaattttgaccaaatg
atctatcacaaaGAAAATAagtccctgaaaatttcaccttgatatctcac
gtagttttgaagatacagcgtctcaaagataggctactaagcgaaaattg
acccctaaatttgGAAACTTGACAGCACCAGTCATCTTGTTTTATAGAAT
GGTTGACAgaatagaaaagaacattttgtATGAAGATTTTGTTGCACAAC
ATTTAAAAGAGAATAAACCTTGCATTTTCTCGTCTAATTTAATCGCTGAT
TGGAAATGTGTAAACAGTTGGGTGAAAAGTGATCATCTCAATactgattt
tattgaaaagcatTTTGGAAACTTGACAGCGCCAGTGATGGATTGCAATA
AACAATATTTCTCATCACATGAAAAGGAAGATATGAAGGTATCAGAATTT
ATCAAATATTGGAATGATCGTGATGATAGATTACTTTATTTGAAAGACTG
GCATTTACAAAAGCTAACTGATGAAAGGTTTTATGACATTCCCACTTTTT
TCACTTCTGACTGGCTAAATGAATACTTTGACAGAGATGGCAAAGACGAC
TACAGGTTTGTTTACATTGGAGTTAAAGGAAGCTGGACTTCATTTCACGC
TGATGTCTTTCGTTCATATAGCTGGTCAGCCAACATATGTGGTCTAAAGA
AATGGATATTCTTTCCGCCTGGAGAAGAAGATAAATTGAGAGACAATTTT
GGAAATCTCCCCTTTGATGTTTCTTCATTGTCCCTAGACGAAATGGACAT
AACTTATTTCGTAACTTTCCAAAAGTCTGGTGAAGTAATTTTTGTTCCTA
GTGGTTGGCATCATCAGGTATTTAATTTGGAAGACACTGTCTCCATCAAT
CATAATTGGGTTAATGCtttca Coding sequence (CDS) from alignment at sc0000727:62175..66146+ >TCONS_00029167 ID=TCONS_00029167|Name=TCONS_00029167|organism=Clytia hemisphaerica|type=CDS|length=1644bp|location=Sequence derived from alignment at sc0000727:62175..66146+ (Clytia hemisphaerica)
CTGGACTTGACAAAGGCGAGATGGTTCGTTTGGCGCACAACAGGGTCAGA
TGGAAAGACATGGTCATGTCATCACTTTCAAGTGGATGatttatgtatAA
TGGTTGACAgaatagaaaagaacattttgtATGAAGATTTTGTTGCACAA
CATTTAAAAGAGAATAAACCTTGCATTTTCTCGTCTAATTTAATCGCTGA
TTGGAAATGTGTAAACAGTTGGGTGAAAAGTGATCATCTCAATactgatt
ttattgaaaagcatTTTGGAAACTTGACAGCGCCAGTGATGGATTGCAAT
AAACAATATTTCTCATCACATGAAAAGGAAGATATGAAGGTATCAGAATT
TATCAAATATTGGAATGATCGTGATGATAGATTACTTTATTTGAAAGACT
GGCATTTACAAAAGCTAACTGATGAAAGGTTTTATGACATTCCCACTTTT
TTCACTTCTGACTGGCTAAATGAATACTTTGACAGAGATGGCAAAGACGA
CTACAGGTTTGTTTACATTGGAGTTAAAGGAAGCTGGACTTCATTTCACG
CTGATGTCTTTCGTTCATATAGCTGGTCAGCCAACATATGTGGTCTAAAG
AAATGGATATTCTTTCCGCCTGGAGAAGAAGATAAATTGAGAGACAATTT
TGGAAATCTCCCCTTTGATGTTTCTTCATTGTCCCTAGACGAAATGGACA
TAACTTATTTCGTAACTTTCCAAAAGTCTGGTGAAGTAATTTTTGTTCCT
AGTGGTTGGCATCATCAGGTATTTAATTTGGAAGACACTGTCTCCATCAA
TCATAATTGGGTTAATGCtttcCTGGACTTGACAAAGGCGAGATGGTTCG
TTTGGCGCACAACAGGGTCAGATGGAAAGACATGGTCATGTCATCACTTT
CAAGTGGATGatttatgtatAATGGTTGACAgaatagaaaagaacatttt
gtATGAAGATTTTGTTGCACAACATTTAAAAGAGAATAAACCTTGCATTT
TCTCGTCTAATTTAATCGCTGATTGGAAATGTGTAAACAGTTGGGTGAAA
AGTGATCATCTCAATactgattttattgaaaagcatTTTGGAAACTTGAC
AGCGCCAGTGATGGATTGCAATAAACAATATTTCTCATCACATGAAAAGG
AAGATATGAAGGTATCAGAATTTATCAAATATTGGAATGATCGTGATGAT
AGATTACTTTATTTGAAAGACTGGCATTTACAAAAGCTAACTGATGAAAG
GTTTTATGACATTCCCACTTTTTTCACTTCTGACTGGCTAAATGAATACT
TTGACAGAGATGGCAAAGACGACTACAGGTTTGTTTACATTGGAGTTAAA
GGAAGCTGGACTTCATTTCACGCTGATGTCTTTCGTTCATATAGCTGGTC
AGCCAACATATGTGGTCTAAAGAAATGGATATTCTTTCCGCCTGGAGAAG
AAGATAAATTGAGAGACAATTTTGGAAATCTCCCCTTTGATGTTTCTTCA
TTGTCCCTAGACGAAATGGACATAACTTATTTCGTAACTTTCCAAAAGTC
TGGTGAAGTAATTTTTGTTCCTAGTGGTTGGCATCATCAGGTATTTAATT
TGGAAGACACTGTCTCCATCAATCATAATTGGGTTAATGCtttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029167-exon-sc0000727-1491911889:62175..62273 | TCONS_00029167-exon-sc0000727-1491911889:62175..62273 | Clytia hemisphaerica | exon |
| TCONS_00029167-exon-sc0000727-1510915933:62175..62273 | TCONS_00029167-exon-sc0000727-1510915933:62175..62273 | Clytia hemisphaerica | exon |
| TCONS_00029167-exon-sc0000727-1575043694:62175..62273 | TCONS_00029167-exon-sc0000727-1575043694:62175..62273 | Clytia hemisphaerica | exon |
| TCONS_00029167-exon-sc0000727-1491911889:65422..66146 | TCONS_00029167-exon-sc0000727-1491911889:65422..66146 | Clytia hemisphaerica | exon |
| TCONS_00029167-exon-sc0000727-1510915933:65422..66146 | TCONS_00029167-exon-sc0000727-1510915933:65422..66146 | Clytia hemisphaerica | exon |
| TCONS_00029167-exon-sc0000727-1575043694:65422..66146 | TCONS_00029167-exon-sc0000727-1575043694:65422..66146 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000727 | supercontig | sc0000727:62175..66146 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003347 | JmjC_dom |
Blast
BLAST of TCONS_00029167 vs. Swiss-Prot (Human)
Match: JMJD4 (JmjC domain-containing protein 4 OS=Homo sapiens GN=JMJD4 PE=1 SV=2) HSP 1 Score: 235.728 bits (600), Expect = 1.314e-73 Identity = 114/248 (45.97%), Postives = 156/248 (62.90%), Query Frame = 2
Query: 131 YEDFVAQHLKENKPCIFSSNLIADWKCVNSWV-KSDHLNTDFIEKHFGNLTAPVMDCNKQYFSSHEKEDMKVSEFIKYWND-------RDDRLLYLKDWHLQK-LTDERFYDIPTFFTSDWLNEYFDRDGKDDYRFVYIGVKGSWTSFHADVFRSYSWSANICGLKKWIFFPPGEEDKLRDNFGNLPFDVSSLSL--------DEMDITYFVTFQKSGEVIFVPSGWHHQVFNLEDTVSINHNWVNAF 823
Y DFV L N PC+FSS W WV + + D + + +G++ PV +C Q ++S+ KE M + ++I YW + LYLKDWHL + E + +P +F+SDWLNE++D DDYRFVY G GSW+ FHAD+FRS+SWS N+CG KKW+ FPPG+E+ LRD GNLP+DV+S +L +++ Q++GE++FVPSGWHHQV NL+DT+SINHNWVN F
Sbjct: 87 YADFVRGFLLPNLPCVFSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDWHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRFVYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRHGNLPYDVTSPALCDTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGF 334
The following BLAST results are available for this feature:
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