TCONS_00029171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029171
Unique NameTCONS_00029171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029171 ID=TCONS_00029171|Name=TCONS_00029171|organism=Clytia hemisphaerica|type=transcript|length=2010bp
GTTGATCGAAATATTAGCAAGACaccattttcaaagaaaagCAATCACAA
CTACGGCAGGATTCTTGGAGTACTTGAACGAAATGATCTGGTCTATTGTC
TCATTACAAATCAAACATATCGAAGAGCCAGAAAATGCAGTCAAGTTATC
GCATTGTATCGGTGCTTTGAAAATCCTTCACTCCTTCAGTATCGATAAAA
GTTGCACCACAGAACTTATCAGTCGTGGTGTACCCAGAGTTATTTTAtgt
ttatcggcgatccaaaaaatatctgcaatctgattggttaaaaagagtac
aatatatcctgtattttacatgtacaaaatataaactgacgaaaagatgt
tgttgcattgtagcggtagcagcaatctaactttgctacaaaactgccct
gcgcttttttccaacacaaaaaatgtatttttttgggtcaccgatattGG
TATCTCTATGCAAATATATCCAGAGCACACAAAACTACACCGTCTTTAGC
TTCAATCGACAAGACAGTGTTCCTGAAAGCGAAAAACGGTACAGCCCTGA
CCCCGAAGACGAACTCAATTTAAACACTCCATTTTTGACCGGTAACCAGT
TCGATTACGTCACAGCCTCCAATGACAACATTTTCTATGAAGAGGACGAA
AGGACGGGCCGAATCACCAACGACCGGCAATTGAAAGAAACCACCAGAGG
GCGGATTCTTACATTGTGCGGGCGGATAACAAGAGCAGACAGAGAAGTGA
GAGTCTTCTTTTCGATCGTTCAACGTCTATTGAGCCACAGCCACCACCGG
TTGAAGAAGTGCTTTCTTCGCCATACACACCATCGAGGAGAGGTTTGCAA
CACGAGGAGGCCGTCAATCACCAACAGATGCGGCGCATCTCACGAAGCAT
GAGTATCTCCCTACAACTCACCAAATCTGTGGTGGGCGAAGAATCACAAG
ACATGTTGCCAGCGACTGATGAAATTGCCAAAAAACTCACCAGGCATTCC
GTCATGACCGTTTATCACTTGGTCAAAAATGCCGGAAACGAAGCTCGACA
GAAATTGCTTGCAATGCCATTAATTTCAGTGCTGTTCAACCTATTATCGT
GTTTTGATGAGCCGTTCAAATTTGAACTTGGTTTGCCCATCTCTTCAATC
ATCATGAAAAGCAGTCAATCGCTTCATCAAGATGAGTGTGGAAGTATAAG
CGGCGCCCATTTGACGCACACCAGCTCCCCGCAAAGTATGATCCTTTCTA
CAAATAAGATGTCCATCTCAAACCAAAATTGGTTTTTCGAAAGCGTCAAG
GCTAATCAGTTCGTCAGCACTAGCCTGTACGAAGAAACTGATGAGAAAGT
TGATGGGTGGTATTTCGAAGTTGTCATTCACACCAAAGGCATTATGCAAA
TTGGTTGGGCGAACGAAGAATGCCATTTCAACGCGCGGAAAGGGATCGGC
GTTGGAGATACGAGCAATTCATGCGGCTTCGATGGCACCAGGTGTAAAGT
ATGGAGTGGTCCTTCCGTCGATGTCGCCATGGAGAATGATTATGGATTAT
CTTGGCAGATTGGTGACATATTAAGCGTGTTGTTGTCATGGAGTGGAGTG
GTGTCTTTCTGGTTGAATGGCAAGGATCTTGGAGCAGCTCTCAAAAATGT
AGACACATCTAAACATTGGTACCCTGCTGCTTCCCTCTCCATCGATCAAC
AGTGTTCTTTCATCTTTGAAGAATCCCAAATGAAGTAAGTAACGATTCGA
TCAAAGCTTTCATCGCAAAACACCCTCCTTTGTCTTCGGTTTGGTATTCC
CTCAATTATTGAACTTCCATCGTcatctttctttctttccagTGTCCTGA
GCagctttttttggacctacccctgtggaggtcctttaaattaacctctg
tccgttcgtcagttaccaacttttctcgagattggctcattagttttttt
tgattttttgcacaaagatgtgtaactataaaccctcgaatgtgacggag
cccgattttc
Run BLAST on NCBI

transcript from alignment at sc0000727:70177..74015+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029171 ID=TCONS_00029171|Name=TCONS_00029171|organism=Clytia hemisphaerica|type=transcript|length=3839bp|location=Sequence derived from alignment at sc0000727:70177..74015+ (Clytia hemisphaerica)
GTTGATCGAAATATTAGCAAGACaccattttcaaagaaaaggtACGCTAg
cgattttttcaatatttaaagaTTATATAATTGAATGTTAGGGAAGGNTA
TTAGCAAGACaccattttcaaagaaaaggtACGCTAgcgattttttcaat
atttaaagaTTATATAATTGAATGTCATAAGATATCCGATGAAATTATTC
AATAAAACATTTGATGCGATAAATAATTCGGTAAATTCGACCTTCTAATC
AAACTGGAAGCCTTTGGTTTGGAGAATGTTGGTATTATTTTGCCCTGCTC
CTCCCACCCAATAGAACTGAAAACATTTGAATCAGGCCAATAGTTTAATT
CTTCGGATAATTCATCAATTGATTTATTGAATAGGTTATCGCATCgattt
ttatcgaatttttaatcaaatatGGTATCTCAAAATTGAAGTTTTTATGG
TATATTAGATCACATCGAAGGAATGTATGGCATAATTTATTGTATCAAAT
GTATTAACCGATCgatttatcgcataatcgaatATTTATTTCATAAGGCA
GCTACGGCTTTTCATGAAGTATGAATCCTATACCCACTTTGTCAATTGTC
ATTCGCACATGAGTTATCTTGTTTAATTATTATTCTAGCAATCACAACTA
CGGCAGGATTCTTGGAGTACTTGAACGAAATGATCTGGTCTATTGTCTCA
TTACAAATCAAACATATCGAAGAGCCAGAAAATGCAGTCAAGTTATCGCA
TTGTATCGGTGCTTTGAAAATCCTTCACTCCTTCAGTATCGATAAAAGTT
GCACCACAGAACTTATCAGTCGTGGTGTACCCAGAGTTATTTTAtgttta
tcggcgatccaaaaaatatctgcaatctgattggttaaaaagagtacaat
atatcctgtattttacatgtacaaaatataaactgacgaaaagatgttgt
tgcattgtagcggtagcagcaatctaactttgctacaaaactgccctgcg
cttttttccaacacaaaaaatgtatttttttgggtcaccgatattGGTAT
CTCTATGCAAATATATCCAGAGCACACAAAACTACACCGTCTTTAGCTTC
AATCGACAAGACAGTGTTCCTGAAAGCGAAAAACGGTACAGCCCTGACCC
CGAAGACGAACTCAATTTAAACACTCCATTTTTGACCGGTAACCAGTTCG
ATTACGTCACAGCCTCCAATGACAACATTTTCTATGAAGAGGACGAAAGG
ACGGGCCGAATCACCAACGACCGGCAATTGAAAGAAACCACCAGAGGGCG
GATTCTTACATTGTGCGGGCGGATAACAAGAGCAGACAGAGAAGTGAGAG
TCTTCTTTTCGATCGTTCAACGTCTATTGAGCCACAGCCACCACCGGTTG
AAGAAGTGCTTTCTTCGCCATACACACCATCGAGGAGAGGTTTGCAACAC
GAGGAGGCCGTCAATCACCAACAGATGCGGCGCATCTCACGAAGCATGAG
TATCTCCCTACAACTCACCAAATCTGTGGTGGGCGAAGAATCACAAGACA
TGTTGCCAGCGACTGATGAAATTGCCAAAAAACTCACCAGGCATTCCGTC
ATGACCGTTTATCACTTGGTCAAAAATGCCGGAAACGAAGCTCGACAGAA
ATTGCTTGCAATGCCATTAATTTCAGTGCTGTTCAACCTATTATCGTGTT
TTGATGAGCCGTTCAAATTTGAACTTGGTTTGCCCATCTCTTCAATCATC
ATGAAAAGCAGTCAATCGCTTCATCAAGGTATTCGGtctttttcttatga
aaaaagacAAGATCAGTTTGTTAGGTTGATTACACTCTACAAACAGCCCG
CTTTTTTACACTCCAGAACCTAAATAAATAAGTAGTCAATTCAATTTCGG
TCTACTTTTCGGCTCTGTTTTTCTCTTATGAGTCCAAGTAAATTAAACTC
TTTATTTGGGTAGAAACCTCCGCCTTAAAACTTGTGCTTCCTTATTCCTC
ATAGATGAGTGTGGAAGTATAAGCGGCGCCCATTTGACGCACACCAGCTC
CCCGCAAAGTATGATCCTTTCTACAAATAAGATGTCCATCTCAAACCAAA
ATTGGTTTTTCGAAAGCGTCAAGGCTAATCAGTTCGTCAGCACTAGCCTG
TACGAAGAAACTGATGAGAAAGTTGATGGGTGGTATTTCGAAGTTGTCAT
TCACACCAAAGGCATTATGCAAATTGGTAAGGCAAACTCCTGGCTAAGTG
TCATAATTTGTTCGTCGTTGTTTGAGATAATCTTATCCCAGGGGGTCATG
CAGTTGATACCAGAAATCATGATGACaagaattaaaatttgaaagtacAC
CCACCACCCCTCAGCAGTTAATACCCAAAAGTACCTAGCGCATTTGACTT
TTGGTAGGTTGGCGCCACCCCCTATTTGCACTTAGTGCCCCGTAGTACTA
AGTGTCATTGACTATTAGCAGGTTGACACCACCCCCTATTCTGCCCTGTT
TAGTGGCCCTGAATGGCTGGGTCTCAAGATAATCACTATTTGAAACCTGT
TCCATGATGTACTTTAGTAGCTGCACACAATTTCAAAACAACCGGATAAT
GGATTTAAGATTCCTGATTTGGTAAATCTGGAGAGTAAGACAAATAAAGC
CTCAGAAAGTCTCTAAAATATTATAAAGCTGTAAGTTATTGATTTGGATA
AGACCAGCTTTTTCAGCAGTTAGTTCCCTAATAGTGCCATTTCATTGACT
TGAAATTCATAGCACACCACCCCTTACAGCAGTTAGGGTACCCACAAGGT
ACTAACTGCAAATTCGAAAAATCAAATAtgacccaccacggtactaaccg
tcATGATGTCTGGTACATGCCTATCTTGTAATCTTCTTTTCATTCTTCTC
AAAAGTTCGTAAAAATTAATATCTACAGAGAACGTTTCCCTTCTAATtca
caaaattgttttgaaaagtttctttctgtaattcgaatgccataaaacat
ttttgctgTCACCACTCAACGTTTTGCTTTCTACAGGTTGGGCGAACGAA
GAATGCCATTTCAACGCGCGGAAAGGGATCGGCGTTGGAGATACGAGCAA
TTCATGCGGCTTCGATGGCACCAGGTGTAAAGTATGGAGTGGTCCTTCCG
TCGATGTCGCCATGGAGAATGATTATGGATTGTAAGCACTGCCTTTTCAC
ATAACTTTCCAACCCATCACTTGTATTGTTTTGTATGCTTTTTAAATCTC
CTTTTGTGCCTTTAGGCGGAAAGTAGAGAACGAAAATGgtgattattttt
caaaatcgaaaCCCAGATATAGGGAAGTACTTTTAtacacaaatatcttt
ttaataCTGACAACTTGCTTCTAAGAGATCTTGGCAGATTGGTGACATAT
TAAGCGTGTTGTTGTCATGGAGTGGAGTGGTGTCTTTCTGGTTGAATGGC
AAGGATCTTGGAGCAGCTCTCAAAAATGTAGACACATCTAAACATTGGTA
CCCTGCTGCTTCCCTCTCCATCGATCAACAGTGTTCTTTCATCTTTGAAG
AATCCCAAATGAAGTAAGTAACGATTCGATCAAAGCTTTCATCGCAAAAC
ACCCTCCTTTGTCTTCGGTTTGGTATTCCCTCAATTATTGAACTTCCATC
GTcatctttctttctttccagTGTCCTGAGCagctttttttggacctacc
cctgtggaggtcctttaaattaacctctgtccgttcgtcagttaccaact
tttctcgagattggctcattagttttttttgattttttgcacaaagatgt
gtaactataaaccctcgaatgtgacggagcccgattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016597XLOC_016597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029171-exon-sc0000727-1491911889:70177..70217TCONS_00029171-exon-sc0000727-1491911889:70177..70217Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1510915933:70177..70217TCONS_00029171-exon-sc0000727-1510915933:70177..70217Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1575043694:70177..70217TCONS_00029171-exon-sc0000727-1575043694:70177..70217Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1491911889:70815..71954TCONS_00029171-exon-sc0000727-1491911889:70815..71954Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1510915933:70815..71954TCONS_00029171-exon-sc0000727-1510915933:70815..71954Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1575043694:70815..71954TCONS_00029171-exon-sc0000727-1575043694:70815..71954Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1491911889:72181..72402TCONS_00029171-exon-sc0000727-1491911889:72181..72402Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1510915933:72181..72402TCONS_00029171-exon-sc0000727-1510915933:72181..72402Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1575043694:72181..72402TCONS_00029171-exon-sc0000727-1575043694:72181..72402Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1491911889:73213..73357TCONS_00029171-exon-sc0000727-1491911889:73213..73357Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1510915933:73213..73357TCONS_00029171-exon-sc0000727-1510915933:73213..73357Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1575043694:73213..73357TCONS_00029171-exon-sc0000727-1575043694:73213..73357Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1491911889:73554..74015TCONS_00029171-exon-sc0000727-1491911889:73554..74015Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1510915933:73554..74015TCONS_00029171-exon-sc0000727-1510915933:73554..74015Clytia hemisphaericaexon
TCONS_00029171-exon-sc0000727-1575043694:73554..74015TCONS_00029171-exon-sc0000727-1575043694:73554..74015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000727supercontigsc0000727:70177..74015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0193146	2.6951e-05	0	0	0	0.0748996	0	0	0	0.356994	0	0	0	0	0	0	0	0	9.2497e-06	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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