TCONS_00029195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029195
Unique NameTCONS_00029195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029195 ID=TCONS_00029195|Name=TCONS_00029195|organism=Clytia hemisphaerica|type=transcript|length=1463bp
attttttagataaCGGTGATAATTGTGTTTAAAGTGACGGGAGCCTGTAT
GTGCACACGTGCATCAacatttaaatttacaattACTGTCGAGAACAAAC
CTCTATTCACCAGTTCACTAGAATCACTATTGAGCTAAAGATTTGGAAGA
TATGTGCACACTACACGACAAGAGAGAAGAAGAAGgctttatttcaattt
tcatcgATCATGATTAGGAGATATACTTTTTTACCACCCACAAATTTTGT
ataaatcagGCATTGGAATGAAAATATGAAGAAACATTGTAGTGGAACAC
AGGCGAATGTCAGGAACAAAGAAGTCCAAATTAGTGGTAAAACAGTGGAG
CGCTTCACGTCACTTGaacggcaagttacacacttgttatttgttaatcc
caatGGGCGATAGGCAGTTAGGcgacgggcgttctctaatCCCCCATCGG
CATCCGTTCATTTTGAATGGAAACAAAAGTTGATGGTTACCATTTTAGAA
TGTTACcgtattttatttgtaaatctggtttgttttgatttaactttgta
tttcaatgacctgccaggtcattcatttgggggaaatgcaagtttccctc
cactgatgtgATTCCCCGACTTCACAATATATGTTTCCTGTAGCAGTGCA
TCTGAAGCTGAGCTTATCTCGCCCAATGAAAATGCTTGATTTATGTGCGA
CCAAACAGAATGGGGTATATGAGTTAGGTACTAGTCTGTACAAAGAATTa
tgtaatttcaaaattcattgccataGTCTGCCGTATTTACAACTAGACAG
TGTCAATTGCATGCAAGTTCAAACATAAATCGCAATGGAAAGCAATATAA
TATAATCTAACCACAGATGTCtcaaagtgaaaaaacaaaCCTGCAAAAAT
AGGAATCAACACACTTCCatgtccgccatctttaattttgcaaattaATC
TAGTGAAATTATCGTTCACTTTCGCTAAAGCGTATATCGCACTGTGTCCA
TGTATTTCAATGCACTGCGTTgctgtattttgttttttgctCGTAATATA
GGTGCGCTGATCGgatcaaatttatttatttatttatttaaattaaaaca
aatttagcAAACAGGAAcccaatatttaaaatgaaaagagaTCTAATCcg
aaagaaaatggaaaaagtatggaaagatgaagaccaaagtccGAGATCAG
GTGCGGTACCTAGAGTAAGCATGCCCTGCCACCCACGAGTCACCCATCTT
CTtcccgaaaaaaaaacaaagaagtgTTCGCCTGACACTATCCAGAAGTG
ATCAGAGAAATAAatgaaagaaagcaaaaatataaaatgcTAATGGGATG
GTCAGGTATAACAGGTTTAACAGCTGTTTCATATATTGATTTTCAAGTGT
ATTATTATTTTAGGTACCTTTCATtatgaaaattctaaataaatcatttt
tagATGGCATGAG
Run BLAST on NCBI

transcript from alignment at sc0000728:98417..106003-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029195 ID=TCONS_00029195|Name=TCONS_00029195|organism=Clytia hemisphaerica|type=transcript|length=7587bp|location=Sequence derived from alignment at sc0000728:98417..106003- (Clytia hemisphaerica)
ATTTTTTAGATAACGGTGATAATTGTGTTTAAAGTGACGGGAGCCTGTAT
GTGCACACGTGCATCAACATTTAAATTTACAATTACTGTCGAGAACAAAC
CTCTATTCACCAGTTCACTAGAATCACTATTGAGCTAAAGATTTGGAAGA
TATGTGCACACTACACGACAAGAGAGAAGAAGAAGGCTTTATTTCAATTT
TCATCGATCATGATTAGGAGATATACTTTTTTACCACCCACAAATTTTGT
ATAAATCAGGTTTGTTTTGATTTAACTTTGTATTTTATCCAGGCGTAGTT
AATCGATATAATCGATAATCTTGAGTAATCGATAAATAATACACCTTTCC
CGTAATTCAAATTTCTCAGAAATGGCCCGGGAAAATGTGCGCTCCACAGG
TGTGTATAAAATTGTTTGGGAGGTAAAAAACGCGTTTTTGCCTGCGAGGG
GTTAGGGAAATTGGGATTTGAGCCTCTAACTTTTGACAGCGACCTTCTTT
TGGCAAAATAATTTCAGGGTGGTATAATATTACGAATAGGTTGAACATAC
TAAAATTTAAGGGGATTTTGTTCGACAGAACTTAAGAAAAGCTCAAAAAA
CCAACTTTCCCTAAAGGGAACGCAGGCAAAAACCTCCATTAAGTTGAAGT
TGGTTTGATATTCTACGTTTGACGTTTGATATTCGTTTGATATTCGTTTG
ATATTCTCAAATTTGCGTTTTGTTTTGAAGTTTTTGTGACTACTTTTGGA
ATTGGAAACTATTGGAAGCCAATAGAGTTTATTCTCAAGGGTGTGTGTGC
AAAATTTCAGCGCTCTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGGGGTTGGAATAAGAATGTCCTGGGTGGAAAATTTTTGAAAAGGA
GGCTAGTACAGCTGAATTAGGACAAAAAAGGGAACTTTCAAAAACATTTT
CCCAAAAATTAATAAGCGGGGGGGTTGAAATAAGAATGTCCTAGGTGGAA
AATTTTCGAAAAATTAATTAGTGGGGGGACGGCTATTAAGTACCCGAGAG
TATGTCTTTTGTCTTCCTAATGTTTTACTAAAATATATTAATGCATGTAC
AATGTCTATAAAGTGTTCTTTTTATATTGAAAATAAAAATAAGATTCACA
TATCTTTTGTCTCTTATGTTTTACTAAAGTAAAATATATATTTAAGCTTA
CTTATGAACAACGTTTAAAAAGTTCTTAGGTCCAACTGTCAAAATTACTG
ATATCCCAACACAAAATAAGCCTAAAATAAAAAAATATTTTCTAAAATAT
AATTCCAAAGAGCAGAGTCAAACAAAAAATGACATTTACACTCTTCAAAA
TATCCCCATGATAAAAAGAGAATAAATTAAAATAAGTTATCTTCAGGCCA
GAGGAGTCAAATATTTCTTCAAACAAAATAATTAGCACCGACCCTTGAGA
ATAAACTCTATTGGCTTCCAATAGTTTCCAATTCCAAAGATAACCGCTCT
CCCCCACAGGAGCCCAACACACCCTTGAGAATAAACTCTATTGGCTTCCA
ATAGTTTCCAATTCCAAAGATAACCGCTCTCCCCCACAGGAGCCCAACTT
GTCATTTCGGCCGAAATGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCT
TGAGAATAAACTCTATTGGCTTCCAATAGTTTCCAATTTCAAAGGTAGTC
ACAAAAACTTCCATACGCAAATTTGAGAATATCAAACGAATATCAAACGA
ATATCAAACGTCAAACGTAGAATATCAAACCAACTTCAACTTAATAAAAC
CTCCAGAGACCAAACGGTGGAGAGCATCAAAATAATGCGCGCGCATTAGT
TTTGCGAATTACGGGAAAGATGTATCGATAAGTAATTGATGGATTAGATA
TCGATCAACCGATAGAATCGATAGGAGGACCCTGCCGACGCACCGGACTG
TCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGCAATAAGTCCGGT
GTTGCATACAGGGAATTTTGAACGCCGGACATTTATGAAACAAAAAATTA
AGAAACACCGGACGCACCGGACTGGTCATGTCCGGTGGGAAAAATATCCT
TCTCCGACACCGGACATTCGACTTCCTTAAGTCTGGTGTAGAAATTGTCC
AGTGGTAAAAAAATTCTCATTTTACACCGGACTTTCGCATGTCCGGTGTT
CGTTAAGTCCGGTGCGTCGGCAGGGTCCTTCGATAGGTAATCGATACTCA
AGATTTTTTCAAAGCTCGATTATTTATCGATCAATTTTGTCATCGATCGT
TTATCGATTATAGATCGATTATACTTCGATTAAATTAAGTATCGATTAAA
AATCAAATAGTTAATCGATCAACTATCGATTTGTGATTGATTATTTATCA
GATTTTAGGGAGATTTATGGATTAATTTTCGCCATTTTTCGCGAAATTAA
AAGCATCATTTTTTGCTGATCTCGATTGGGATGTACTTTTGAATTGAATC
CAATCCCCTGGTAGCATAGGGCCCAGACAGTTACATCAAAATGCCTCGAA
AATGTCAATATGAAAATTGCGTAATCAGAGAACGTATGTCTCGCTCATTA
TTATAAAAAGGCCGAGACAAACTTTCAATAATTGGATTGTAACATCAAGT
TAAGTCTCTTTTGTTAAGTCACCAGGGCGTAATTAAAACAGACCTTGATA
CATTTATCTTCGTTTCAACTTGACGATTCGTTTAAAACTCGGCCTCCTAA
ATATTTGGGGTAGGTAAAATATGTACAAAGAAATTCATACTTTTCCAACC
CGGCGAATCTTTAAAAAAGAAGCGAACAATAATTACCCTTTCCGAATAAA
CCTCTTCGGTGGCGAGCGTAGTCTACTCTGACGTAATTGTAAAATTTATG
TGATGGGAGTATGACATAGTAATGTAATGTTGTTTGGGGAATTATGAAGT
TCACTGGAATTTCGATTGCATTTATTCAGGTTGATTTTTTATGACTTCTA
ATGGTACTTTTTCTAACGAGTTTGATTACTCTGTTCTCACACTTGTCTTT
TTTTTTCGCGTCCTTTTCCGTGATTACTTTTACAGTATTTATATTTTTAA
AGACAGGTAAGAAGGCATATTGATGTAACTGCCAGAAAAGCTACTACACT
CTTTTTTTTATAAGCATACAGTAAATTTCGGCTGAAGCATTCTCAAACCC
TCTGAAAGGCTGAACAAAAAAAAAGTAAAAAAGAACAACAAAGTTACCAT
TTTATTTAGAGAAGGGGCATTATTGAATGGTTTGCCTTTTTGGAGGTGCA
TTATTAATTCTAAAGTGGGCGTTTATTCAAAGTAATACAATCGGTATGAG
ATTTGGCGAATTCCAGAAATTTTCTTTACTTCATTAAATACAATATCTTG
GCCCTTTTTACGCTGGACCTTATTAGCATTATTATTGGGCTGGTGGAATA
AGGGCTGGCGTAAAAAGGGCTGGTAATGTAGTCAATAGTCGGTCACAATC
GATATATAATCGATAAAGATACGTGATGGAAGATAAGTAATCAATGCATG
AACGATAAGTAATCAATGATTGTTAACAATCGATACATGATTGATAAGTA
ATCGATAGGTATGTAGTCGATATGTGATCGTAAGTAATCGATAGCTTGGA
AATATCGATCGTTGATCGATAGTCAAGATTTTTTGAAGGTCTGATTACCT
ATCAATTCTATCGGTTAATCGATATCTAATCCATCGATTACTTATCGATT
ATTTATCGATTACTCAAGATTATCGATTATATCTATTAACTACGCCTGGA
TTTATGCATGTTAGCCTCCACTGATGCAAGTATGAAGTCAGTGACCACCT
TCGTTCGATCATTTCCATTACTTTTTAATTTATACTTTCGATCACATTGG
GCGATTCAAGTTATAGTTACCCCCTGGACAACATGAATTTTCCGTACAAT
AACAATTTACTTTTGAAAATCTTCAGGATTTCTGTAACATTTAAGATTTT
TTATGGGGAAATCTTGGATTTTCTGATACTTTGCAAGAAAATAGAGCAAA
TTTATGGATTTTCCAGTACTTGGCAAGAAAATATAACAAATTTTGTGGAT
TTTCAGATACATATTATAGTAAGTGAGGGAAAATCCTTGATTTTCCAAAA
CCTTTTTCAAATTTCTTAGGATTTCAACCTTTCTATCAATTTCAGCTGAT
AGAATAAAGAGTGTCAGAATTAGAGGAGGGGTGTAGAGATTAGACCAAGT
TACGGTATACCGTGAAGTCAGGAAACTTGCATAGCCATCAAATGCCTGAC
CATTCAAAGCAGCAAATTTTCAAAACAAATGAACTACTCAGCTCCACGCG
CTGCTCTGCTCCGCAAATGTTTTTCCATAAGTGGCCCAAGCTCTGGTTTA
ATGGCCCAAGCTCTGATTTAATGGTCCAAGCTCTGATTTAACAGCCAAAG
CTCTGAATTACCGGCCCAAGACCTGCGAAACCTTGCGACTTTGGAACTTG
CTTTTTTGCCCCGATTTATATTGCCCAAGAGCTGAATTATTGTCCGGAAA
AGTAAAAAAAACTAGTAGAATACATTAAAAGATCATCAAATAAAAGTAGG
AATAACAGATCATTTATCGTTTTATTTAAACAAAAGCAAGTCTCAAGAAT
CGCAAAGTTGCGCAGGTGTTTGGCCGGTAATTCAGGTCTTGGACAGCTAG
TTCAGGGCTTAGCCGCTTACAGAAAAATTTTTTGCCTCTGCTCTACTGTC
AACTGCTCTAACTTGGGACTATCTGGCAAAACATGGGACAGCAATTTGGC
CAACATTTTACCGAACCTCCAAAGTCATTTGATTTGAGTTAATGAACGGC
ATATTAAAAATAAATTTCTTTCACACTGAGTAGGCATTGGAATGAAAATA
TGAAGAAACATTGTAGTGGAACACAGGCGAATGTCAGGAACAAAGAAGTC
CAAATTAGTGGTAAAACAGTGGAGCGCTTCACGTCACTTGAACGGCAAGT
TACACACTTGTTATTTGTTAATCCCAATGGGCGATAGGCAGTTAGGCGAC
GGGCGTTCTCTAATCCCCCATCGGCATCCGTTCATTTTGAATGGAAACAA
AAGTTGATGGTTACCATTTTAGAATGTTACCGTATTTTATTTGTAAATCT
GGTTTGTTTTGATTTAACTTTGTATTTCAATGACCTGCCAGGTCATTCAT
TTGGGGGAAATGCAAGTTTCCCTCCACTGATGTGATTCCCCGACTTCACA
ATATATGTTTCCTGTAGCAGTGCATCTGAAGCTGAGCTTATCTCGCCCAA
TGAAAATGCTTGATTTATGTGCGACCAAACAGAATGGGGTATATGAGTTA
GGTACTAGTCTGTACAAAGAATTATGTAATTTCAAAATTCATTGCCATAG
TCTGCCGTATTTACAACTAGACAGTGTCAATTGCATGCAAGTTCAAACAT
AAATCGCAATGGAAAGCAATATAATATAATCTAACCACAGATGTCTCAAA
GTGAAAAAACAAACCTGCAAAAATAGGAATCAACACACTTCCATGTCCGC
CATCTTTAATTTTGCAAATTAATCTAGTGAAATTATCGTTCACTTTCGCT
AAAGCGTATATCGCACTGTGTCCATGTATTTCAATGCACTGCGTTGCTGT
ATTTTGTTTTTTGCTCGTAATATAGGTGCGCTGATCGGATCAAATTTATT
TATTTATTTATTTAAATTAAAACAAATTTAGCAAACAGGAACCCAATATT
TAAAATGAAAAGAGATCTAATCCGAAAGAAAATGGAAAAAGTATGGAAAG
ATGAAGACCAAAGTCCGAGATCAGGTGCGGTACCTAGAGTAAGCATGCCC
TGCCACCCACGAGTCACCCATCTTCTTCCCGAAAAAAAAACAAAGAAGTG
TTCGCCTGACACTATCCAGAAGTGATCAGAGAAATAAATGAAAGAAAGCA
AAAATATAAAATGCTAATGGGATGGTCAGGTATAACAGGTTTAACAGCTG
TTTCATATATTGATTTTCAAGTGTATTATTATTTTAGGTACCTTTCATTA
TGAAAATTCTAAATAAATCATTTTTAGATGGCATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016614XLOC_016614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029195-exon-sc0000728-1575043694:105745..106003TCONS_00029195-exon-sc0000728-1575043694:105745..106003Clytia hemisphaericaexon
TCONS_00029195-exon-sc0000728-1575043694:98417..99620TCONS_00029195-exon-sc0000728-1575043694:98417..99620Clytia hemisphaericaexon
TCONS_00029195-exon-sc0000728-1510915933:105745..106003TCONS_00029195-exon-sc0000728-1510915933:105745..106003Clytia hemisphaericaexon
TCONS_00029195-exon-sc0000728-1510915933:98417..99620TCONS_00029195-exon-sc0000728-1510915933:98417..99620Clytia hemisphaericaexon
TCONS_00029195-exon-sc0000728-1491911889:105745..106003TCONS_00029195-exon-sc0000728-1491911889:105745..106003Clytia hemisphaericaexon
TCONS_00029195-exon-sc0000728-1491911889:98417..99620TCONS_00029195-exon-sc0000728-1491911889:98417..99620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000728supercontigsc0000728:98417..106003 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0538283	0.11147	0.136317	0.0997917	0	0	0	0	0	0	0.0865943	0.194132	0.125921	0.0958555	0	0	0.000683782	0	0	0	0	0	0.0899556	0.176978	0.0871329	0.089931	0	0	0	0.0602417
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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